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Celine Caseys

@ccaseys.bsky.social
263 followers 794 following 12 posts

Plant ☘️ and fungi system biologist / feeding plants to Botrytis @UCDavis 🧪🔬🚲 🍵☘️ fan. Swiss expat in the US, feeling like a world citizen.

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Reposted by Celine Caseys
Dan Kliebenstein @spicybotrytis.bsky.social · 29/07/2025
The first in a coming array of papers looking at the co-transcriptome of 72 Botrytis genotype in 10 different host plants is out. Summary is the pathogen uses a combination of general virulence and host specific plasticity (not new genes) to infect dicots. www.biorxiv.org/content/10.1...
biorxiv.org
Combined generalist and host-specific transcriptional strategies enable host generalism in the fungal pathogen Botrytis cinerea
How generalist pathogens infect phylogenetically diverse hosts remains a central question in plant-pathogen biology. In particular, the extent to which broad host range is enabled by genetic variation...
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Dan Kliebenstein @spicybotrytis.bsky.social · 09/06/2025
Midst of the labs Genetics publish-athon from @ccaseys.bsky.social. Infecting a population on host genotypes spread across 8 dicots we could show that a generalist pathogen has both generalist and specialist genes url:https://academic.oup.com/genetics/article/doi/10.1093/genetics/iyaf079/8158657
Experimental design of infecting 72 pathogen genotypes on 12 genotypes each of 8 different dicot plants to compare virulence.
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Marco Todesco @mtodesco.bsky.social · 03/04/2025
Really neat paper out in @nature.com on an efficient way to produce doubled haploids in sunflower, thanks to the serendipitous discovery of spontaneous haploid parthenogenesis. That might be the least intelligible sentence I have ever written - great science communication Marco! tinyurl.com/yxwc2a5v
nature.com
Haploid facultative parthenogenesis in sunflower sexual reproduction - Nature
Spontaneous parthenogenesis in sunflower has been used to develop a scalable doubled haploid breeding system.
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Alain Goossens @alaingoossenspsb.bsky.social · 03/04/2025
Recruitment time! You're a junior postdoc and want to discover and produce bioactive fungal metabolites that are involved in the chemical warfare between fungi and plants? Then apply here! jobs.vib.be/j/108923/pos...
jobs.vib.be
Postdoctoral Researcher - VIB
OverviewThe group of Specialized Metabolism, led by Prof. Alain Goossens at the VIB-UGent Center for Plant Systems Biology, and the metabolic engineering researc
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Marc Somssich @somssich.bsky.social · 03/04/2025
📜 Phylogenetic and genomic mechanisms shaping glucosinolate innovation 🧑‍🔬 @stairwaytokevin.bsky.social, Amanda Agosto Ramos, @spicybotrytis.bsky.social 📔 Current Opinion in Plant Biology 🔗 www.sciencedirect.com/science/arti... #️⃣ #PlantScience #PlantImmunity #PlantMetabolites #Glucosinolates
sciencedirect.com
Phylogenetic and genomic mechanisms shaping glucosinolate innovation
Plants have created an immense diversity of specialized metabolites to optimize fitness within a complex environment. Each plant lineage has created n…
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Botany One @botany.one · 20/01/2025
📝 Fungal Friends Help Young Trees Thrive in Mixed Forests 🧵 doi.org/n249 Young spruce trees grow better with pine neighbours thanks to underground helpers. #Botany #PlantScience 🧪 #InBrief
Treetops pierce a yellow fog.
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Bart Deplancke @bartdeplancke.bsky.social · 10/01/2025
Fantastic opportunity: 🚀 Calling early-career scientists! Apply for the 2025 ELISIR Scholar at EPFL. From outstanding PhD straight to group leader. Join an interdisciplinary research community to conduct independent research in any area of #lifesciences in Lausanne, CH 👉 go.epfl.ch/ELISIR
go.epfl.ch
EPFL Life Sciences Early Independent Research Scholar (ELISIR)
From exceptional PhD directly to independent group leader
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Remco Stam @rstam.bsky.social · 04/01/2025
New preprint! I always wondered: How much diversity do pathogens have within a single field? This important to assess the risk of resistance breakdown or spread of fungicide resistance . Together with colleagues from BASF we looked into this. www.biorxiv.org/content/10.1...
biorxiv.org
Zymoseptoria tritici show local differences in within-field diversity and effector variation
Zymoseptoria tritici is a cosmopolitan hemibiotrophic wheat pathogen with a high mutation rate and a mixed reproduction system, leading to challenges in traditional farming management. For successful ...
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The Conversation UK @uk.theconversation.com · 03/01/2025
Meet the fungi that live in the sea
dlvr.it
Meet the fungi that live in the sea
Despite being known to science for over a century thanks to a few early pioneering marine mycologists, most people have never heard of marine fungi.
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Gitta Coaker @gittacoaker.bsky.social · 01/01/2025
Cool, elegant paper. Inverted repeat transposon near EFR affects chromatin organization and gene expression to fine-tune immune responses. #MPMI #plantimmunity www.nature.com/articles/s41...
nature.com
Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response - Nature Structural & Molecular Biology
Here, the authors show that an inverted-repeat transposon located next to the pattern recognition receptor ELONGATION FACTOR-TU RECEPTOR (EFR)-encoding gene in Arabidopsis controls chromatin organizat...
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Celine Caseys @ccaseys.bsky.social · 31/12/2024
I feed plants to a eat-it-all fungus
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 31/12/2024
New! @jenncoughlan.bsky.social kindly shared their MIRA NIH award with our github repo. If you have a successful grant app you're willing to share, please contribute! github.com/RILAB/statem...
github.com
GitHub - RILAB/statements: Successful Job Applications and Grants
Successful Job Applications and Grants. Contribute to RILAB/statements development by creating an account on GitHub.
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The Conversation U.S. @us.theconversation.com · 31/12/2024
Could fungi actually cause a zombie apocalypse? buff.ly/49XzsrR #CuriousKids
buff.ly
Could fungi actually cause a zombie apocalypse?
Be very afraid – if you’re an insect.
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Ivan the K ™ @ivanthek.bsky.social · 21/12/2024
HAPPY WINTER SOLSTICE TO ALL WHO OBSERVE! (Happy summer solstice to the rest of you.)
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UCDavisPlants @ucdavisplants.bsky.social · 20/12/2024
🌱 Tamera Taylor, Jiregna Daksa, Alexander Chen, Siobhan Brady and Dorota Kawa collaborated on a discussion of how #microbiomes offer hope against Striga in #sorghum. This study explores how soil microbes suppress this parasitic weed in Sub-Saharan crops. ▶️ bio-protocol.org/en/bpdetail?...
Striga developmental stages of interest.
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UCDavisPlants @ucdavisplants.bsky.social · 20/12/2024
🍇 Dario Cantu, Mélanie Massonnet and Noé Cochetel collaborated on ways wild grape #genomics unlocks climate resilience for viticulture. Advances in pangenomics & haplotype analysis reveal traits for disease resistance, adaptability, & sustainability. ▶️ www.cell.com/trends/genet... #ClimateAdaptation
cell.com
The wild side of grape genomics
With broad genetic diversity and as a source of key agronomic traits, wild grape species (Vitis spp.) are crucial to enhance viticulture’s climatic resilience and sustainability. This review discusses how recent breakthroughs in the genome assembly and analysis of wild grape species have led to discoveries on grape evolution, from wild species’ adaptation to environmental stress to grape domestication. We detail how diploid chromosome-scale genomes from wild Vitis spp. have enabled the identification of candidate disease-resistance and flower sex determination genes and the creation of the first Vitis graph-based pangenome. Finally, we explore how wild grape genomics can impact grape research and viticulture, including aspects such as data sharing, the development of functional genomics tools, and the acceleration of genetic improvement.
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Richard Waite @waiterich.bsky.social · 14/12/2024
Important piece by @mikegrunwald.bsky.social. Food systems convos can get polarized between “boost yields” vs “reduce env. harms” vs “change consumption patterns.” The reality, as this piece describes, is that the 🌎 needs to do it all to feed 9-10 billion people while protecting nature & climate.
nytimes.com
Opinion | Sorry, but This Is the Future of Food (Gift Article)
Every farm, even the scenic ones with red barns and rolling hills, is a kind of environmental crime scene, an echo of whatever wilderness it once replaced.
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Megan McDonald @mcdonaldmeganc.bsky.social · 07/12/2024
HI old friends! Finally took the leap here to say I have several open positions going in my lab at the moment (and more to come). 1) PhD studentship in collaboration with the Royal Horticultural Society (genomics) 2) Biochemistry Postdoc to understand how Starships move Check out the links below!
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Mary Williams @PlantTeaching @plantteaching.bsky.social · 07/12/2024
It's online! If you missed yesterday's Plant Physiology focus issue webinar on Root Development, don't worry, you can watch the recording here. @hhtormar.bsky.social @idane.bsky.social youtu.be/1q_Z9PI8_Is?... #PlantSci academic.oup.com/plphys/issue...
youtu.be
Plant Physiology Webinar: Root Development
YouTube video by Plantae
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Pietro Spanu @pietrospanu.bsky.social · 06/12/2024
"Sit down and enjoy the coffee" journals.plos.org/plosbiology/...
journals.plos.org
Horizontal transfers between fungal Fusarium species contributed to successive outbreaks of coffee wilt disease
Outbreaks of coffee wilt disease, caused by the fungus Fusarium xylarioides, have severely impacted coffee production. By sequencing and comparing 13 historical strains spanning 60 years and multiple ...
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UCDavisPlants @ucdavisplants.bsky.social · 05/12/2024
🔬 Maeli Melotto, Brianna Fochs and, Zachariah Jaramillo explore stomata: a plant’s frontline defense against pathogens. Learn how plants & pathogens battle for survival at this critical gateway. ▶️ www.annualreviews.org/content/jour... #PlantImmunity #CropScience #PlantPathology
annualreviews.org
Fighting for Survival at the Stomatal Gate | Annual Reviews
Stomata serve as the battleground between plants and plant pathogens. Plants can perceive pathogens, inducing closure of the stomatal pore, while pathogens can overcome this immune response with their...
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Society for the Protection of Underground Networks (SPUN) @spun.earth · 05/12/2024
Our first Bluesky post contains some good news for #fungi! After a long history of being unprotected, COP16 marked a huge advancement in the conservation of fungi. 🍄🥳 Thanks to work led by our partners at Fungi Foundation, The Fungal Conservation Pledge was introduced at #COP16. bit.ly/3Vl9GHL
bit.ly
Why Fungi Could Get Higher Conservation Status And Why It Matters
The UK and Chile are proposing at the UN’s biodiversity conference COP16 in Colombia that fungi receive the same status to animals and plants. This could help foster and funding research.
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Celine Caseys @ccaseys.bsky.social · 05/12/2024
What scares me about natural disasters like #earthquakes is how unreliable the notification system seems to be. Why are half of the people notified and the other half get no messages? Is it about phone brands, networks? Is it about settings on the phones? Is it about authorizing localization?
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 03/12/2024
new preprint from the lab! Elli Cryan, coadvised but the inimitable @spicybotrytis.bsky.social, does a deep dive into the GA incompatibility loci in maize, finding complex haplotypes, overturning evolutionary origins, and discovering a paramutation system! A 🧵 www.biorxiv.org/content/10.1...
biorxiv.org
Molecular evolution of a reproductive barrier in maize and related species
Three cross-incompatibility loci each control a distinct reproductive barrier in domesticated maize ( Zea mays ssp. mays ) and its wild teosinte relatives. These three loci, Teosinte crossing barrier ...
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Jason Stajich @hyphaltip.bsky.social · 04/12/2024
bbc.com/travel/artic... 🧀 🍄‍🟫
bbc.com
Is the future of French cheese at stake?
Earlier this year, cheese fans panicked following the publication of new research on essential cheesemaking moulds, certain the end was nigh for beloved Brie and Camembert.
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Celine Caseys @ccaseys.bsky.social · 28/11/2024
I have been in North America for 10 years but I don't have #thanksgiving traditions nor family to share a full meal with. However, I really love pumpkin pie. Here is how it is starting this morning. Thankful for this beautiful butternut squash
A butternut squash cut in half. The inside is of a beautiful smooth orange color. In the center are orange fibers and seeds
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Celine Caseys @ccaseys.bsky.social · 24/11/2024
What helped during the last admin was a slack for international scholars across institutions, so that we knew pretty fast what was going on. Also exchanged names of immigration lawyers, advices, news. Made things a bit easier, removed a tiny bit of the burden and it felt less alone
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Dr. Kat Napaaqtuk❄️ @napaaqtuk.bsky.social · 24/11/2024
So, #AcademicSky, are you telling international students/other mentees not to travel after Jan 20th? I have a postdoc from China I am worried about, trying to figure out what to put into place in case she is deported. Based on this article and others: wesleyanargus.com/2024/11/18/u...
wesleyanargus.com
University Responds to Potential Immigration Challenges Under Trump Administration
Wesleyan University's twice-weekly student newspaper since 1868.
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David Ho @davidho.bsky.social · 23/11/2024
Cycling is 10 times more important than electric cars for reaching net-zero cities and 100 times more fun.
theconversation.com
Cycling is ten times more important than electric cars for reaching net-zero cities
Active travel can help tackle the climate crisis earlier than electric vehicles – even if you swap the car for a bike for just one trip a day.
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Jon Lim, FRCP PhD @drjonlim.bsky.social · 23/11/2024
🎨 In case anyone need… The NIH BioArt Source is an awesome library of *free* professionally drawn illustrations for scientific presentations or figures. Downloadable in HD. Thank you NIH for this invaluable tool 🙏! Check it out 👇 bioart.niaid.nih.gov
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Anna Jo Muhich @annajomu.bsky.social · 19/11/2024
Hi 👋 I’m Anna, a PhD candidate at UC Davis. I work on interactions between plants and Botrytis cinerea with @spicybotrytis.bsky.social. I am interested in what generalist pathogens can tell us about diverse host chemical defenses, and how one pathogen can take them all on 🥊
Cucurbit leaf with Botrytis cinerea lesions
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Rainer Melzer @ucdflowerpower.bsky.social · 19/11/2024
Plant biologists! We need you! We did set up a quick survey to study why people chose to study plant science. Please check here and shared widely: forms.gle/4X3FUwzxXBx3... #PlantSci
media.tenor.com
a man holding a large green leaf with the words i just love a good leaf below him
ALT: a man holding a large green leaf with the words i just love a good leaf below him
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Alain Goossens @alaingoossenspsb.bsky.social · 18/11/2024
First steps on Bluesky. Let's see how much enthusiasm I can raise to send contributions to our upcoming focus issue on Metabolism in Plant Physiology @plantphys.bsky.social
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Sebastian S. Cocioba @atinygreencell.bsky.social · 18/11/2024
I am ***absurdly*** excited to announce the launch of a new funding opportunity through Experiment dot com!!! You have one month to pitch something wonderful in the realm of plant biology/biotech research and education. $10,000 max grant. PLEASE RE-POST + SHARE!!! 1/3 experiment.com/programs/pla...
experiment.com
Plant Biology Exploratory Research Microgrant | Experiment
For Science!
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Celine Caseys @ccaseys.bsky.social · 17/11/2024
Post a picture you took (no description) to bring some zen to the timeline But make sure you add alt text!
A park in front of a bay with two trees and a hammock hanging in between. Somebody is in the hammock reading peacefully a book. In the background, a beach and city skyline.
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Denis Wirtz @deniswirtz.bsky.social · 17/11/2024
Download our database of 492 (!) funding opportunities for EARLY-CAREER FACULTY AND RESEARCHERS. For each entry, we provide link to funder, description, amount, deadline, and eligibility criteria (e.g. citizenship). Download freely here: research.jhu.edu/rdt/funding-...
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Kevin Bird @stairwaytokevin.bsky.social · 15/11/2024
My work on a pangenome for the hexaploid oilseed crop Camelina sativa is now out early access in Genetics! This young polyploid genome has a small pangenome to match it's low SNP diversity, but regained lost diversity by packing in all the unique genes from its 3 diploid progenitors.
doi.org
Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa
Abstract. Ancient whole-genome duplications (WGDs) are believed to facilitate novelty and adaptation by providing the raw fuel for new genes. However, it i
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