iiinova — where your digital self keeps evolving

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Johannes Soltwedel @jo-soltwedel.bsky.social · 01/10/2026

Just released the napari-clusters-plotter 0.11.0 github.com/BiAPoL/napar..., a little passion-project of mine for interactive exploration of datasets and attached features in @napari.org Two cool things to take note of 👇

github.com

GitHub - BiAPoL/napari-clusters-plotter: A napari plugin for clustering objects according to their properties.

A napari plugin for clustering objects according to their properties. - BiAPoL/napari-clusters-plotter

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Marie Held @makaefer.bsky.social · 28/09/2026

Want to enhance your image analysis skills with napari? We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data. 🕒 Applications close on 15 September. Learn more and apply 👇 www.crick.ac.uk/whats-on/cbi...

crick.ac.uk

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napari @napari.org · 26/09/2026

🚀 napari is hiring Remote Developers-in-Residence! Join us to build the future of interactive n-dimensional data visualization in Python. 💻 60% Dev / 20% Maintenance / 20% Community & Outreach ⏱️ Contract, 14–35 hrs/wk 🌍 Global 100% Remote Learn more and apply today: napari.org/island-dispa...

napari.org

We’re hiring Developers-in-Residence! — napari blog documentation

Organization: napari (a NumFOCUS Sponsored Project) Position Type: Independent contractor agreement. Global, 100% Remote. Duration: One year, possibility to extend. Commitment: 0.4 to 1.0 FTE…

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napari @napari.fosstodon.org.ap.brid.gy · 26/09/2026

🚀 napari is hiring Remote Developers-in-Residence! Join us to build the future of interactive n-dimensional data visualization in Python. 💻 60% Dev / 20% Maintenance / 20% Community & Outreach 💰 $59.50/hr (Contract, 14–35 hrs/wk) 🌍 100% Remote, open globally Learn more and apply today […]

fosstodon.org

Original post on fosstodon.org

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Johannes Soltwedel @jo-soltwedel.bsky.social · 23/09/2026

🤝Coordinate transformations extend the promise of interoperability to complex, non-linear transformations. Do a registration in imagej.net/plugins/bigw... @bogovicj.bsky.social in #Fiji, store the NGFF transform and apply it to your data elsewhere! (Dataset: rodare.hzdr.de/record/3131)

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BioImaging North America @bioimagingna.bsky.social · 21/09/2026

#HappyMicroscopyMonday #microscopycommunity - Can’t join us in Madison? You can still be part of I2KxBINA 2026 via Zoom Events! 🎟️ Virtual registration is FREE! 📅 Virtual registration closes September 27, 2026 Link: buff.ly/qoZqTbm

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Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 22/09/2026

There is still time to register. And maybe you can attend my #BigVolumeBrowser workshop

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Stella Dees @stelladees.bsky.social · 25/08/2026

Happy to share that our paper *Resonant Third Harmonic Generation in biological pigments* is out ! 🎉 Many thanks to all co authors !🔬🥳

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Joel Lüthi @joelluethi.bsky.social · 19/08/2026

Join the Open Bioimaging Practices Meetup all about OME-Zarr viewers on Monday, August 24th, 4pm CEST. Learn about ViZarr, napari & VolE & hear user stories on how they handle OME-Zarrs. More info here: www.biovisioncenter.uzh.ch/en/events/Up...

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Daniel Franco-Barranco @danifranco93.bsky.social · 30/06/2026

🎉 Big news: our paper "Representation matters" just got accepted as a Registered Report (Stage 1) in Nature Methods! 🧬 We're building the first rigorous, preregistered benchmark of instance segmentation representations in bioimage analysis. 🧵👇 (1/3)

Examples of intermediate representations used in bottom-up instance segmentation for bioimage analysis. Shown are representative pixel- or voxel-level targets derived from instance annotations, including binary feature maps (for example, foreground, contours, centroids, and skeletons), distance-based representations (for example, horizontal/vertical offsets, radial distances, distance to boundary, and distance to center), and affinity-based representations. Here, neighbor affinities denote local connectivity predictions indicating whether adjacent pixels or voxels belong to the same object. The rows show illustrative examples from different datasets and are not intended to imply a sequential workflow or a one-to-one correspondence between representations. In the benchmarked pipelines, such intermediate
representations are subsequently converted into final object instances by downstream grouping or post-processing procedures such as watershed, clustering, or graph partitioning.

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Joel Lüthi @joelluethi.bsky.social · 29/06/2026

Want to learn about converting data into OME-Zarr and the design choices behind different tools built for it? Join the Open Bioimaging Practices Meeting tomorrow: Tuesday, June 30th 2026, 4pm CEST. Learn more about the event here: www.biovisioncenter.uzh.ch/en/events/Up... (1/3 🧵)

biovisioncenter.uzh.ch

Open Bioimaging Practices Meetup June 30th 2026

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Roberto Toro @r3rt0.bsky.social · 14/06/2026

What signals organise the global layout of the neocortex? Come to poster #2558 #OHBM2026 on Wednesday 13h45 or Thursday 14h45 to chat about folding, geometry, mechanics and genes! @k4tj4.bsky.social @julien-lefevre.bsky.social

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Roberto Toro @r3rt0.bsky.social · 14/06/2026

The NAAT lab is taking the TGV from Paris to Bordeaux in not too long, heading to #OHBM2026. Come talk to us about everything brain development & evolution! 🧠🤓🥰 @k4tj4.bsky.social @caporalclement.bsky.social

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Royal Microscopical Society @royalmicrosoc.bsky.social · 11/06/2026

Applications are once again open for our Technical Specialist Job Shadowing Programme 😃 🔬 Find out more and apply before *31 August* ow.ly/GuYR50Zaxsb

Two people sitting at a desk with dual monitors displaying scientific data and images, engaged in discussion in an office setting.

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CNRS à Paris-Saclay @cnrs-paris-saclay.bsky.social · 10/06/2026

💼 Vous êtes spécialisé dans le traitement du signal ou des images, l’apprentissage automatique, ou la vision par ordinateur ? Rejoignez le CNRS et prenez part à l’étude d’œuvres d’art grâce à l’apprentissage profond. ▶️ emploi.cnrs.fr/Offres/CDD/U...

#RejoignezleCNRS
Vous êtes spécialisé dans le traitement du signal ou des images, l’apprentissage automatique, ou la vision par ordinateur et avez de bonnes compétences en Python et en apprentissage profond ?
Crédit image : © DC Studio - Adobestock

Rejoignez le CNRS et prenez part à l’étude d’oeuvres d’art grâce à l’apprentissage profond.
Postulez dès maintenant !
© Konstantin - Adobestock

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Crick BioImage Analysis Symposium @cbias.bsky.social · 08/06/2026

Fantastic line of speakers for this upcoming edition of #CBIAS26🤩 With a novelty this year: image analysis beyond bio! Let's all share expertise, who knows, maybe tracking stars accros the galaxy is as exciting and challenging as tracking cells accros a whole embryo? Share far and wide #microscopy

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Virginie Uhlmann @virginieuhlmann.bsky.social · 01/06/2026

📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...

jobs.uzh.ch

UZH: Bioimage Analyst

The University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp...

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Anna Foix @afoix.bsky.social · 26/05/2026

🔬 One more year! BioImage Computing has been accepted to @eccv.bsky.social 🎉 Show us your work at the intersection of computer vision, ML & biology! Check out our speaker lineup: @arratemunoz.bsky.social, @jakobtroidl.bsky.social & Juliette Griffié 👏 ⏳ Deadline: 13 July ℹ️ www.bioimagecomputing.com

bioimagecomputing.com

BioImage Computing

a truly interdisciplinary workshop

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napari @napari.fosstodon.org.ap.brid.gy · 22/05/2026

🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy! Hack on napari, join deep dives, meet the team. All experience levels welcome! 📝 Register by July 1: napari.typeform.com/naplari-hack #napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis

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napari @napari.org · 22/05/2026

napari.typeform.com

naPLari Hackathon

Questionnaire for the napari hackathon in Krakow, Poland, July 24-29th, 2026.

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anil oza @aniloza.bsky.social · 14/05/2026

wow — the preprint host, arxiv, is banning authors for a year if they submit papers with hallucinated citations 🤖

Twitter thread from Thomas Dietterich, reading "Attention
@arxiv
authors: Our Code of Conduct states that by signing your name as an author of a paper, each author takes full responsibility for all its contents, irrespective of how the contents were generated. 1/
3:03 PM · May 14, 2026
·
66.7K
Views
Relevant
View quotes

Thomas G. Dietterich
@tdietterich
·
1h
If generative AI tools generate inappropriate language, plagiarized content, biased content, errors, mistakes, incorrect references, or misleading content, and that output is included in scientific works, it is the responsibility of the author(s). 2/
Thomas G. Dietterich
@tdietterich
·
1h
We have recently clarified our penalties for this. If a submission contains incontrovertible evidence that the authors did not check the results of LLM generation, this means we can't trust anything in the paper. 3/
Thomas G. Dietterich
@tdietterich
·
1h
The penalty is a 1-year ban from arXiv followed by the requirement that subsequent arXiv submissions must first be accepted at a reputable peer-reviewed venue. 4/
Thomas G. Dietterich
@tdietterich
·
1h
Examples of incontrovertible evidence: hallucinated references, meta-comments from the LLM ("here is a 200 word summary; would you like me to make any changes?"; "the data in this table is illustrative, fill it in with the real numbers from your experiments") end/"

9458111914

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Peter O'Toole @yorkbioimaging.bsky.social · 24/04/2026

Not just for microscopists, but relevant to all technical specialists. Making the invisible visible: A global examination of careers and recognition for Imaging Scientists in core facilities - Thompson - Journal of Microscopy - Wiley Online Library onlinelibrary.wiley.com/doi/10.1111/...

onlinelibrary.wiley.com

Making the invisible visible: A global examination of careers and recognition for Imaging Scientists in core facilities

Modern life-science research relies heavily on advanced imaging technologies, from microscopes that reveal the structure of cells to imaging systems used in biomedical research. These instruments are...

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Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 23/04/2026

New release of #BigTrace is out (0.9.0): finally, IJ macro concurrency is fixed (hopefully), added groovy scripting, moved to its own Fiji listed update site, and it has proper ROI transparency rendering (below).

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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 19/04/2026

Want to present a poster, talk, or workshop at this year's Images 2 Knowledge (I2K) meeting - Sep 27 - October 2nd in Madison, WI? Please fill out the form by Thursday - we really want to highlight your contributions! airtable.com/appPes56Tahc...

A cow behind some buildings overlooking a lake - top banner says "I2KxBINA 2026 Community Congress", while bottom banner says "Cultivating the Multiscale Imaging Frontier"

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Panos Oikonomou @eigenp.bsky.social · 18/04/2026

1/ 🔬🧑‍💻 Tired of going back and forth between GUIs and code for your 3D image analysis needs? Would you like to keep your focus in one place (notebook), without sacrificing interactivity? Here’s a tool that can help!

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Marta Perera @martaperera.bsky.social · 15/04/2026

Don't forget to register for the Young Embryologists Network (YEN) Conference 2026! Francis Crick Institute, London June 15th, 2026 Abstract Deadline: May 13th, 2026 Lots of opportunities for talks from abstracts! Link: forms.gle/fxtmNHjEziVTFprN6 #DevelopmentalBiology #ReproductiveBiology

docs.google.com

YEN 2026 - Sign up + Abstract Submission

Please fill in the fields below for registration and abstract submission to YEN 2026 - https://www.youngembryologists.org/yen-2026/ Abstract submission will remain open until 15th May 2026. We look ...

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Denis Wirtz @deniswirtz.bsky.social · 14/04/2026

Mapping nerves in a whole embryos. We find that across species and development stages, embryonic nerves display (beautiful) fractal geometry. More here: www.biorxiv.org/content/10.6...

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Stefan Terjung @stefanterjung.bsky.social · 14/04/2026

We are looking for an experienced light microscopy specialist, motivated to support our users in the Advanced Light Microscopy Facility at EMBL Heidelberg. embl.wd103.myworkdayjobs.com/en-US/EMBL/j... -closing date 11 May 2026 @eurobioimaging.bsky.social @globalbioimaging.bsky.social

embl.wd103.myworkdayjobs.com

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Denis Wirtz @deniswirtz.bsky.social · 14/04/2026

3D single-cell maps of embryos reveal "universal" geometry of blood vessels and nerves. More here: www.biorxiv.org/content/10.6...

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Antoine Bergel @antbergel.bsky.social · 10/04/2026

⚠️ Postdoc Opportunity in System Neuroscience at the Paris Brain Institute ⚠️ Feel passionate about neuroscience and sleep 🧠? Want to learn cutting-edge techniques 🔬 to answer exciting basic science questions? Want to work in a multidisciplinary environment at the heart of Paris 🏨? Come join us !

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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 09/04/2026

🚨Are you an expert in #proteomics, #metabolomics, #singlecell #spatialomics, or #datascience?🌟 Looking for new opportunities in a growing environment surrounded by scientific excellence (👉 #NIMSB)? And, in Lisbon...🌊🏝️☀️🏄‍♀️...🍍🦐🍷...❤️ Deadline April 20th👇 www.linkedin.com/posts/nimsb_...

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Ignacio Arganda-Carreras @iarganda.eurosky.social · 08/04/2026

🚨 Registration closing soon! Join the AIM-Net Deep Learning Summer School (2–6 June 2026, La Ràpita 🇪🇸) 🔬 Hands-on training in AI for microscopy & bioimage analysis 👩‍🔬 For PhDs & early-career researchers 💻 Lectures + practicals + project work ⏳ Apply before April 10 aim-net.net/eventos/aim-...

aim-net.net

AIM-Net · Deep Learning Summer School

Introduction to AI methods for microscopy and quantitative bioimaging The AIM-Net Summer School is a core training activity of the AIM-Net thematic network (AEI–REDES) in collaboration […]

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Damian Dalle Nogare @damiandn.bsky.social · 07/04/2026

🚨🚨🚨JOB ALERT🚨🚨🚨 The Image Analysis Unit at Human Technopole in Milan is recruiting for two positions to join our growing team: 1) Bioimage Analyst 2) Research Software Engineer (RSE) Read on to learn why one of these two people should be you!

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EuroCC@Belgium @eurocc-belgium.bsky.social · 20/03/2026

📢 New training on Bioimage analysis in Python by the VIB! 🔬 Microscopy generates complex, multi-dimensional image data. This course provides researchers with elementary skills for processing images using Python. 🗓️ 21-22/04/2026 🌍 Campus Gasthuisberg, Leuven ✅ training.vib.be/all-training...

training.vib.be

Bioimage analysis in Python

Microscopy generates complex, multi-dimensional image data that requires efficient analysis to extract meaningful biological insights. This introductory course provides researchers with practical skil...

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Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 31/03/2026

The new release of #BigVolumeBrowser (0.1.0) finally adds animation render functionality to it, plus some other navigation improvements and bug fixes. Here is a movie I've made for the microtubule network (via ExM) in different cell types. Contact me if you want it for educational/research purposes.

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Gaëlle Letort @gaellel.bsky.social · 27/03/2026

I'm happy to present our new tool, EpiCure, a napari plugin to ease correction of segmentation and tracking of epithelia movies, developed in @devstempasteur.bsky.social

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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 20/03/2026

Our Bioimage Analysis Beginnings Bootcamp is back and better than ever! Delighted to offer some fee support this time, thanks to the generous sponsorship of @bioimagingna.bsky.social . Apply now to join us June 1st to 5th to level up your skills! Learn more at cimini-lab.broadinstitute.org/bootcamp

An advertisement for the Bioimage Analysis Beginnings Bootcamp, in blue and white text and abstract shapes on top of pictures of cells.
Learn core bioimage analysis skills using open-source tools for light microscopy. Open to participants at all skill levels.
Registrations open through April 10
Sponsored by BioImaging North America
Where & When
Broad Institute, 415 Main Street, Cambridge, MA (in-person only)
Monday–Friday, June 1–5, 2026 9:00 AM – 5:00 PM
Register at broad.io/BAB3
Fee: $750 (Academic/Non-Profit)
$1250 (Industry/For-Profit)

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GloBIAS @globias.bsky.social · 20/03/2026

Are you facing challenges with an image analysis problem? 🤯 🚀 Boost your bioimage analysis skills with GloBIAS Free Help! Learn more and stay updated here: www.globias.org/activities/g... #ImageAnalysis #globias-free-help #ScienceSupport

forms.gle

Join Our Free Help Session

Come and get your image analysis questions answered! GloBIAS (globias.org) is hosting a regular virtual community session where you can book a 40-minute slot to work one-on-one with a bioimage expert ...

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napari @napari.org · 10/03/2026

napari needs your help! Has napari helped you make cool and groundbreaking discoveries? We'd love to highlight that in our docs. Please tell us about it! You can fill in this survey: napari.typeform.com/to/vTCKeTKv and/or, as ever, drop by our chat room or meetings: napari.org/dev/community/ 🙏

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napari @napari.org · 12/03/2026

Speaking of units and axes metadata, try out the newly released napari-metadata (napari.org/napari-metad...)! This nifty plugin is available on pypi, conda-forge, and in the bundle. You can visualize and change layer metadata on the fly. Feedback especially encouraged! 😇

napari-hub.org

Layer metadata - napari Plugin - napari-metadata contributors

View and edit layer metadata

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Virginie Uhlmann @virginieuhlmann.bsky.social · 10/03/2026

If you've been wondering what our current obsession with OME-Zarr and lego blocks is about, I have good news for you: the Fractal preprint is out! Thanks to @joelluethi.bsky.social , all co-authors, and the Fractal developers and users community for making this beautiful project a reality ❤️

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Erick Ratamero @erickratamero.com · 10/03/2026

Calling all OME Community members, contributors, and lurkers! Please take a minute to answer the OME 2026 Community Survey (docs.google.com/forms/d/e/1F...) to help us prepare for discussing the future of OME governance during the OME 2026 Community Meeting at the end of April.

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Jean-Yves Tinevez @jytinevez.bsky.social · 09/03/2026

Let's get ready for a full month of training in image analysis in @pasteur.fr , this summer! Are you interested in learning how to do bioimage analysis? For light microscopy? for cryo-EM? And for cellular cryo-EM? Stay tuned, Pasteur offers access to THREE courses, this June. 👇🎓

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Horst Obenhaus @octoscience.bsky.social · 06/03/2026

BIG UPDATES! OCTRON now supports the new SAM3 models (alongside SAM2)! We’ve also added a global switch for Detection vs. Segmentation: Use the same annotations to train either lightweight detection or full segmentation models. Plus, we’ve added support for the new YOLO26 models. ⤵️ 1/12

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SWC/GCNU Neuroinformatics Unit @neuroinformatics.dev · 05/03/2026

Are you a neuroscientist with great coding skills, or a software engineer interested in the brain? We are recruiting for a research software engineer to help us build pipelines to process weeks of neural and behavioural recordings from freely moving animals. More details: bit.ly/rse-2026a

Drawing of the "Aeon" project, an open-source platform to study the neural basis of ethological behaviours over naturalistic timescales.

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Constantin Pape @cppape.bsky.social · 05/03/2026

Looking for a PhD position at the intersection of AI, imaging, and gene therapy? Apply for this position in my lab: tinyurl.com/2a2v6tvx Part of sfb1690.uni-goettingen.de to study hearing, vision, and more. Plus, you can create pretty pictures as the one below :).

A cochlea imaged in light-sheet microscopy (right) with staining for spiral ganglion neurons (red) and inner hair cells (blue). You will develop AI-based methods to analyze these structures, for example via segmentation of the individual cells (right) that will support gene therapy development for hearing loss and a better overall understanding of the anatomy of hearing.

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Eva de la Serna @sciencedoodles.bsky.social · 03/03/2026

Apply to join #BoBiAC2026 this summer! You'll learn how to use Python to segment fluorescence images w/tools like @ilastik-team.bsky.social & CellposeSAM, & even learn how to measure cell features, neighborhood relationships, & colocalization. No coding experience needed! More info: bobiac.github.io

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