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𝙱𝙰𝚂𝙰𝙽𝚃𝙰 𝙺𝙷𝙰𝙺𝚄𝚁𝙴𝙻

@basantakhakurel.bsky.social
750 followers 807 following 17 posts

वसन्त खकुरेल PhD student at Ludwig Maximilians Universität München. Phylogenetics | Bayesian statistics | Morphological Evolution | basantakhakurel.github.io (he/him)

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Wayne Maddison @waynemaddison.bsky.social · 09/09/2026
The Tree of Life web project is back! A phylogenetic view of biodiversity way ahead of its time (ca. 1995!), conceived and led by David Maddison, collaborative & human-curated, widely used in teaching. Defunct technology had doomed it until Travis, Danny, and Andrew revived it. 🥳🎉 🧪 #evolbiol
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Ziheng Yang Lab @zihengyang.bsky.social · 10/09/2026
🎉 Congratulations to Ziheng Yang and Rasmus Nielsen, joint recipients of the 2026 Balzan Prize for Molecular Evolution: Decoding Patterns of Genomic Change 🎉 To mark the occasion, we all went out for a celebratory lab lunch! 🥳 www.balzan.org/en/evoluzion...
The Yang Lab celebrated Ziheng's Balzan Prize while having a lovely lunch together! Right side of the table, front to back: Ziheng Yang, Tomas Flouri, Jiayi Ji. Left side of the table, front to back: Sandy Álvarez-Carretero, Zihui Yuab, Ana Serra Silva.
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Corrie Moreau @corriemoreau.bsky.social · 23/08/2026
📣 📣 📣 UPDATE: The 2026-2027 list of faculty and postdoc positions in ecology and evolutionary biology is out! Be sure to check out this active and helpful community run resource! docs.google.com/spreadsheets...
docs.google.com
ecoevojobs.net 2026-27
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Rui Borges @ruiborges23.bsky.social · 19/08/2026
1/4 Excited to share that our paper "Phylogenetic inference with not-so-rare mutations and tiny organisms" has been accepted in Systematic Biology! 🧬🦠 academic.oup.com/sysbio/artic...
academic.oup.com
Phylogenetic inference with not-so-rare mutations and tiny organisms
Abstract. A common assumption in mathematical models of molecular evolution is that mutations are rare. One example is the boundary mutation assumption, wh
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Carrie M. Tribble, PhD @tribblelab.bsky.social · 21/08/2026
Hello world! You bored? My research group is documenting flower color variation and you can help! check out tribblelab.org/flower_color... and dm me with any technical difficulties or issues. Share with your friends! The more players the better.
tribblelab.org
In Bloom — Flower Color Quiz
A crowdsourced flower-color observation quiz.
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Priscilla Lau @prilau.bsky.social · 30/07/2026
Also check out the link below for a tutorial on how to use our model! revbayes.github.io/tutorials/co...
revbayes.github.io
RevBayes: State-dependent Ornstein-Uhlenbeck Models
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Priscilla Lau @prilau.bsky.social · 30/07/2026
Our paper (also, my first first-author paper) is now available in MEE early view! In this study, we introduced a state-dependent Ornstein-Uhlenbeck model we implemented in RevBayes to test adaptive hypotheses in macroevolution. (1/3) besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
An efficient Bayesian phylogenetic approach for joint inference of continuous and discrete trait evolution under a state‐dependent Ornstein–Uhlenbeck model
Macroevolutionary adaptation of a continuous trait to different discrete states across species can be modelled using a phylogenetic state-dependent Ornstein–Uhlenbeck (OU) process. Existing infere...
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Jake Berv @jakeberv.bsky.social · 20/07/2026
Happy to share this 'capstone' project from my time as a postdoc @umich.edu, where we show that hierarchically nested bursts of body-shape evolution may underlie much of perching-bird diversification over ~50 million years. Free access link here: rdcu.be/fuxB1
rdcu.be
Rates of passerine body plan evolution in time and space
Nature Ecology & Evolution - A reconstruction of the evolutionary history of passerine body plans over the past ~50 Myr shows rare bursts of phenotypic innovation near the origin of major...
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Bruno do Rosario Petrucci @brpetrucci.bsky.social · 17/06/2026
Hope to see y'all at #Evol2026! I'll be talking about my simulation tests of cutting-edge fossilized birth-death models, and what we can learn from the Canidae phylogeny using these models. Come through! It'll be on Sunday (June 21st) at 5:15PM, room 22. Last talk first day 🤙
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Methods in Ecology and Evolution @methodsinecoevol.bsky.social · 19/06/2026
Don't forget to submit a proposal for our latest special feature 👉 Time-dependency in Micro- and Macroevolutionary Rates 🌍 🧪 Deadline for proposals is the 10th July, and paper submission will be due in February 2027⏰️ Find out more and submit a proposal 👇 buff.ly/2yt4RLt
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The Royal Society @royalsociety.org · 05/06/2026
Professor Joe Felsenstein FRS is elected a Fellow of the Royal Society. After initially working on population genetics theory of recombination, of migration, and of speciation, his main focus has been on phylogenetic inference. #RSFellows royalsociety.org/people/joseph-fels…
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Dr. Davey F. Wright ⛏️🦕🧬 @daveyfwright.bsky.social · 03/06/2026
Absolutely overjoyed to share our new paper describing the oldest occurrence of soft-tissue preservation in crinoid echinoderms and their ecological significance 🧪
royalsocietypublishing.org
Exceptional soft-tissue preservation reveals the oldest evidence for tube feet and their ecological significance in crinoids
Abstract. Tube feet are extensions of the echinoderm water vascular system that play essential roles in feeding and ecology in living crinoids. However, on
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Gustavo A. Ballen @gaballench.bsky.social · 29/05/2026
And finally it was published! Massive thanks to my coauthors, the editor and reviewers, and the institutions that supported our research. journals.plos.org/plosone/arti...
journals.plos.org
What did the dove sing to Pope Gregory? Ancestral melody reconstruction in Gregorian chant using Bayesian phylogenetics
An attractive goal in the study of Gregorian chant melodies is reconstructing unobserved melodies as they may have been transmitted along their history, especially as early chant notation does not cap...
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Michael Landis @landismj.bsky.social · 28/05/2026
The @systbiol.bsky.social Mentorship Program is back for 2026-2027! The program pairs off mentees with mentors based on shared interests in systematics and biodiversity research. Low effort, high reward! 12 virtual monthly meetings. More info: www.systbio.org/mentorship-p... Apply by June 12th!
systbio.org
Mentorship Program
Last updated May 14, 2025
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Laura Mulvey @lauramulvey.bsky.social · 27/05/2026
📣 Introducing MorphSim: an R package for simulating discrete morphological data along phylogenetic trees, built for fossil-inclusive phylogenetics, with all the complexity of real morphological data baked in 🪨🌿 besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
MorphSim: An R package for simulating discrete morphological data
Morphological data are essential for reconstructing evolutionary histories, particularly for fossil taxa, as they represent the primary source of information for integrating extinct lineages into ...
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Tiago Simões @trsimoes.bsky.social · 26/05/2026
This will make my life easier! Nice work! "MorphSim: An R package for simulating discrete morphological data" besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
MorphSim: An R package for simulating discrete morphological data
Morphological data are essential for reconstructing evolutionary histories, particularly for fossil taxa, as they represent the primary source of information for integrating extinct lineages into ...
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PaleoSynthesis @paleosynth.bsky.social · 25/05/2026
New MSc in Earth System Dynamics & Evolution at FAU Germany! 🌍🧪 Starts Oct 2026. Interdisciplinary + Science Diplomacy. No tuition fees worldwide! 🎓 Funding: Elite Network of Bavaria. 🗓️ Deadline: July 15 💻 Webinars: May 26 (9:00/18:00 CEST) Info & Reg: earthsystem-master.nat.fau.eu
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Michael Landis @landismj.bsky.social · 22/05/2026
Preprint from Feburary by the talented @albertchristian.bsky.social on modeling diversity-dependent speciation, extinction, and dispersal in a GeoSSE framework while using deep learning for inference: www.biorxiv.org/content/10.6...
Image with four panels showing (a) scenario of phylogenetic tree and species ranges generated from speciation, extinction, and dispersal events in regions A and B; (b) how species counts increase/decrease in regions A and B over time; and how changing numbers of species in A and B cause changes in local (c) speciation rates, (d) extinction rates, and (e) dispersal rates.
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Michael Landis @landismj.bsky.social · 22/05/2026
New preprint with Sarah Swiston (sswiston.com) and Sean McHugh (@phyllurus.bsky.social) modeling species range evolution in continuous space using ellipses to represent ranges, applied to Australian skinks www.biorxiv.org/content/10.6...
Figure shows (a) cartoon for how ancestral/descendant ranges [ellipses] may be inherited during cladogenesis; (b) how ellipses are generated from projects of circles through tilted plane; (c) circular coordinate system for cladogenesis; (d) budding-range cladogenesis pattern; and (e) splitting-range cladogenesis pattern.Example of ancestral range estimate for an ancestral sphenomorphine skink species (node 235) during cladogenesis leading to two daughter species (nodes 240 and 236), plotted on Australia.Image of Lerista bougainvilii: https://en.wikipedia.org/wiki/Lerista#/media/File:South-eastern_Slider_(Lerista_bougainvilii)_(9250941591).jpg
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Michael Landis @landismj.bsky.social · 22/05/2026
New work by methods-maven Anna Nagel (nage0178.github.io) on adapting likelihood-free deep-learning approaches for ancestral state estimation problems. Anna assessed how DL and Bayesian estimates compare (when possible) under various CTMC, SSE, and SIR models www.biorxiv.org/content/10.6...
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Michael Landis @landismj.bsky.social · 22/05/2026
I should mention Sarah graduated last Tuesday, so that should read Dr. Swiston! 🥳
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Laura Mulvey @lauramulvey.bsky.social · 14/05/2026
📣 10 days left to register for our workshop: Bridging Stratigraphic Palaeobiology and Phylogenetics Questions? Reach out to any of the organisers: @rachelwarnock.bsky.social @niklashohmann.bsky.social More information and registration 👉 www.lorentzcenter.nl/site/index.p...
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Alessio Capobianco @acapomorphic.bsky.social · 13/05/2026
My new paper with @gdarlim.bsky.social and @hoehna.bsky.social is now out in Proceedings B! We set out to compare two different approaches to time-calibrate a molecular phylogeny: traditional node calibrations, and unresolved FBD... @royalsocietypublishing.org doi.org/10.1098/rspb...
doi.org
How to date a molecular phylogeny: comparison of effective priors between node calibration and fossilized birth–death
Abstract. Time-calibrating a phylogenetic tree is a fundamental step in phylogenetic inference, as it allows the study of macroevolutionary processes such
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gdarlim.bsky.social @gdarlim.bsky.social · 11/05/2026
As of last month, I’ve joined the editorial board of the Journal of Vertebrate Paleontology @jvertpaleo.bsky.social as the new Phylogenetics Editor! I’m responsible for evaluating reproducibility of phylogenetic analyses submitted to the journal. 💻⚒️
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The Guardian @theguardian.com · 08/05/2026
‘The greatest ambassador for life on Earth’: Tributes paid to David Attenborough on his 100th birthday
theguardian.com
‘The greatest ambassador for life on Earth’: Tributes paid to David Attenborough on his 100th birthday
Naturalist says he has been ‘overwhelmed by greetings’ as milestone is marked with event at Royal Albert Hall David Attenborough said he had been “completely overwhelmed by birthday greetings” for his centenary on Friday and thanked wellwishers “most sincerely”. The naturalist said he had hoped to celebrate his 100th birthday quietly. Instead, the milestone will be marked with a live event at the Royal Albert Hall broadcast on BBC One, featuring music from his programmes as well as stories and reflections from public figures and leading advocates for the natural world. In a recorded audio message shared on Thursday night, Attenborough said: “I had rather thought that I would celebrate my 100th birthday quietly, but it seems that many of you have had other ideas. Continue reading...
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Mario dos Reis @mariodosreis.bsky.social · 07/05/2026
IQ-TREE 3 is now integrated with MCMCTree: That is, IQ-TREE's sophisticated substitution models can now be used for Bayesian molecular-clock dating analyses!
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Minas Karamanis @minaskar.bsky.social · 30/03/2026
Hey, I wrote a thing about AI in astrophysics ergosphere.blog/posts/the-ma...
ergosphere.blog
The machines are fine. I'm worried about us.
On AI agents, grunt work, and the part of science that isn't replaceable.
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Laura Mulvey @lauramulvey.bsky.social · 23/04/2026
🪸🦕 📈 🪨 Excited to announce our upcoming workshop: Bridging Stratigraphic Palaeobiology & Phylogenetics, with Emilia Jarochowska, @niklashohmann.bsky.social, @rachelwarnock.bsky.social, and Johan Hidding 📍 Lorentz Centre, Leiden 📅 28 Sep – 2 Oct 2026 Applications open - details below 👇
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Prof Alex Dunhill @profalexdunhill.bsky.social · 20/04/2026
📣New paper from DeepBio@Leeds researcher @barankarapunar.bsky.social 📣 "The Permian-Triassic Transition in Türkiye: New Insights and 3D Outcrop Models for Accessible, Reproducible and Sustainable Fieldwork" in The Depositional Record onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
The Permian–Triassic transition in Türkiye: New insights and 3D outcrop models for accessible, reproducible and sustainable fieldwork
We studied the Permian–Triassic successions of south-western Türkiye at five locations, synthesised sedimentological and palaeontological data, putting it into a consistent stratigraphic framework an...
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Pedro Godoy @pedrolgodoy.bsky.social · 17/04/2026
🚨 Out today: our Editorial in @jvertpaleo.bsky.social on an important issue in science - the reproducibility crisis in phylogenetic analyses. In it, we analyze several years of editorial data to ask a simple question: are things improving? www.tandfonline.com/doi/full/10....
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Michael Landis @landismj.bsky.social · 06/04/2026
New study led by Sean McHugh (@phyllurus.bsky.social) now out in @systbiol.bsky.social! Sean's approach models how species gain and lose biome affinities over time, both in terms of where they *do* live (e.g. movement) and where they *could* live (e.g. adaptation) doi.org/10.1093/sysb...
academic.oup.com
A Phylogenetic Model of Established and Enabled Biome Shifts
Abstract. Where each species actually lives is distinct from where it could potentially survive and persist. This suggests it is important to distinguish e
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Michael Landis @landismj.bsky.social · 06/04/2026
New preprint on the recent history of phylogenetic biogeography, with co-authors Isabel Sanmartín and Joel Cracraft, now up on EcoEvoRxiv: ecoevorxiv.org/repository/v...
Figure of historical timeline for ideas in the manuscript. Caption reads: "An evolving view of phylogenetic biogeography. Each period (arrow) corresponds to one of the four periods discussed in the main text. The ordering of themes within each period does not precisely correspond to when key ideas were introduced or popularized."
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 02/04/2026
How much information is there for inferring species trees? www.biorxiv.org/content/10.64898/20…
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Dr John Clarke @jclarkepaleo.bsky.social · 30/03/2026
Postdoc in Macroevolution - Deadline April 12th - Join a team of Stuttgart botanists & myself to test drivers of Angiosperm diversification! Fully open process Submit cover letter, CV, 3 referees & publication list in a single PDF to postdoc-botany@smns-bw.de + 3 key papers (if possible) as PDF
naturkundemuseum-bw.de
Jobs | Staatliches Museum für Naturkunde Stuttgart
Offene Stellen
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EvolDir @evoldir.bsky.social · 04/04/2026
Postdoc position available at SMNS in Stuttgart focusing on macroevolution and angiosperm traits. Applications are open until April 12, 2026. More info: bsky.app/profile/jclarkepaleo.bsky.… #postdoc
bsky.app
Dr John Clarke (@jclarkepaleo.bsky.social)
Evolutionary biologist & paleontologist. https://scholar.google.co.uk/citations?user=nm06iU8AAAAJ&hl=en Macroevolution, phylogenetic comparative methods, diversification, phenotypic evolution of 🐠🌿🦋 Postdoc @iDiv in Leipzig
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EvolDir @evoldir.bsky.social · 24/03/2026
Six postdoc positions in Earth system science are available in Germany, focusing on climate-driven plant extinctions and Bayesian phylogenetics. Applications deadline: 09.04.26. Details: fau-earth-system-science.github.io/… #postdoc
fau-earth-system-science.github.io
Earth System Research and Training at FAU
Earth System Research and Training at FAU
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 22/03/2026
Ancestral state reconstruction with discrete characters using deep learning www.biorxiv.org/content/10.64898/20…
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Rachel Warnock @rachelwarnock.bsky.social · 13/03/2026
I’m looking for a post doc (up to five years) interested in phylogenetics and earth systems - please spread the word!
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Dr. Davey F. Wright ⛏️🦕🧬 @daveyfwright.bsky.social · 10/03/2026
Cool study. On a separate note, wow we need more (and larger) phylogenies of invertebrate clades
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Jessica Budke 🌱🥼🔬 @mossplants.bsky.social · 05/03/2026
The @herbariumcurators.bsky.social SE USA Chapter is pleased to invite you to Coffee with a Curator: Demetra Kandalepas will present a tour of the Glen N. Montz Herbarium at Southeastern Louisiana University (SELU) on Friday, March 20th at 1pm CT/ 2pm ET. (Note this is not our typical time.)
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Will Gearty @willgearty.bsky.social · 06/03/2026
📢 Including fossil tips in your phylogeny can double your continuous trait model fitting accuracy! Updated preprint out now on @ecoevorxiv.bsky.social. 🔗 doi.org/10.32942/X27... with @pedrolgodoy.bsky.social @macroecoevoale.bsky.social and @bethanyjallen.bsky.social
doi.org
Quantifying the Impact of Fossil Age on Reconstructing Trait Evolution Using Phylogenetic Comparative Methods
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Alessio Capobianco @acapomorphic.bsky.social · 04/03/2026
New paper out from @hoehna.bsky.social Lab, led by the brilliant @bjorntko.bsky.social! We applied the Pesto software (Kopperud & Höhna, 2025) to look at lineage-specific shifts in diversification rate on large, densely-sampled phylogenies across the Tree of Life doi.org/10.1093/evle...
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EvolDir @evoldir.bsky.social · 26/02/2026
Applications are open for a 3-year funded PhD position at the Finnish Museum of Natural History, focused on dung beetle evolution. Deadline: March 16. … jobs.helsinki.fi/job/Helsinki-Docto… #gradstudent
jobs.helsinki.fi
Doctoral Researcher in Macroevolution and Phenotypic Diversification of Dung Beetles
Doctoral Researcher in Macroevolution and Phenotypic Diversification of Dung Beetles
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Bryan Carstens @bryanccarstens.bsky.social · 26/02/2026
The first two articles of Volume 5 of the Bulletin of the Society of Systematic Biologists are now published at ssbbulletin.org.
ssbbulletin.org
Bulletin of the Society of Systematic Biologists
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Frostbitten Flamingo @flemtheparrot.bsky.social · 25/02/2026
Morning.
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Hoyaboya @hoyaboya1.bsky.social · 23/02/2026
Khakurel & Höhna (2026-02, Systematic Biology) A covarion model for phylogenetic estimation using discrete morphological datasets doi.org/10.1093/sysb...
doi.org
A covarion model for phylogenetic estimation using discrete morphological datasets
Abstract. The rate of evolution of a single morphological character is not homogeneous across the phylogeny and this rate heterogeneity varies between morp
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𝙱𝙰𝚂𝙰𝙽𝚃𝙰 𝙺𝙷𝙰𝙺𝚄𝚁𝙴𝙻 @basantakhakurel.bsky.social · 25/02/2026
Our new paper 'A covarion model for phylogenetic estimation using discrete morphological datasets,' is out in SysBio! We introduce the "covariomorph" model in RevBayes to capture character and lineage specific rates of morphological traits. 🔗 doi.org/10.1093/sysb...
doi.org
A covarion model for phylogenetic estimation using discrete morphological datasets
Abstract. The rate of evolution of a single morphological character is not homogeneous across the phylogeny and this rate heterogeneity varies between morp
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ignacio quintero @ignacioq.bsky.social · 11/02/2026
Want to learn the ins and outs of diversification, trait and biogeographic evolution models? I will be giving another edition of "Dive Deep into Probabilistic Phylogenetic Comparative Methods" in Oct! @tscourses.bsky.social www.transmittingscience.com/courses/evol...
transmittingscience.com
Dive Deep into Probabilistic Phylogenetic Comparative Methods
Transmitting Science ONLINE course Dive Deep into Probabilistic Phylogenetic Comparative Methods, by Dr. Ignacio Quintero.
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Nico Mongiardino Koch @nmkphylo.bsky.social · 19/01/2026
Becoming a part of the @systbiol.bsky.social community is one of my greatest scientific achievements. I am happy to celebrate this today with a journal cover and a nomination to the editorial team
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