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Dr John Clarke

@jclarkepaleo.bsky.social
3.6K followers 4.7K following 207 posts

Evolutionary biologist & paleontologist. scholar.google.co.uk/citations?user… Macroevolution, phylogenetic comparative methods, diversification, phenotypic evolution of 🐠🌿🦋 Postdoc @iDiv in Leipzig

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Dr John Clarke @jclarkepaleo.bsky.social · 01/10/2026
Dynamic body size evolution during speciation of predatory cichlid fishes in the Lake Malawi superradiation genome.cshlp.org/content/36/5...
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Senckenberg Gesellschaft für Naturforschung @sgn.one · 17/09/2026
📣 #Forschungsnews: Heiß, kalt, trocken – Klimawandel prägte Säugetiervielfalt vor 66 bis 23 Mio Jahren🌡️ Tiergemeinschaften in Zentralasien reagierten auf globale Erwärmungs- und Abkühlungsphasen – und eine regionale Trockenphase. 👉 sgn.one/kki uni-jena.de idiv-research.bsky.social 📷 Meijer
Forscher untersucht Schichtungen an einer steilen Felswand mit Hochhäusern der chinesischen Stadt Xining im Hintergrund.Bunte, geschichtete Felsformation im chinesischen Xining-Becken mit roten und weißen Gesteinsschichten unter klarem Himmel.
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Dr. Joe Moysiuk @cambrojoe.bsky.social · 15/09/2026
Graduate student opportunities in my lab! Seeking up to 2 students to start next year. Learn more: joemoysiuk.weebly.com/student-oppo...
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Andrej Spiridonov @andrejpaleo.bsky.social · 16/09/2026
"We find three macroevolutionary transitions in mammal assemblages... regional Asianmid-Eocene aridification and...global events—the Paleocene-Eocene Thermal Maximum (...warming 56Ma) and the Eocene-Oligocene Transition (prolonged cooling 34Ma)." www.nature.com/articles/s41... 🧪⚒️ #Geology #Paleobio
Sampling-corrected estimates for richness, turnover, and body mass for total Mammalia, spanning the Paleocene, Eocene, and Oligocene Epochs and corresponding Asian Land Mammal Ages (ALMAs).
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Dr John Clarke @jclarkepaleo.bsky.social · 11/09/2026
An interesting new paper regarding how mammal species richness and size responds to both global and regional climate change through time!
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Gemma Benevento @gemmabenevento.bsky.social · 10/09/2026
Delighted to finally share our paper examining Paleogene mammal faunas and global and regional environmental change in Central Asia.... www.nature.com/articles/s41... @nielsmeijer.bsky.social @sgn.one @idiv-research.bsky.social
An infographic showing the fossil localities map in Central Asia, and a graph showing the timing of mammal faunal changes alongside geological proxies for global and regional environmental change.
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Hervé Rogissart @herverogissart.bsky.social · 22/07/2026
🏔️🐟🧬 Excited to share my first PhD publication! We investigated how phenotypic plasticity, rapid selection, and genetic drift contribute to rapid phenotypic divergence in Arctic charr populations isolated for just over a century. Thanks to all my co-authors, collaborators, and reviewers! 😊
royalsocietypublishing.org
A century of allopatry: plasticity and rapid selection shape phenotypic trait variability under contrasting environments
Abstract. Allopatric isolation under contrasting environments can drive rapid phenotypic divergence, even over contemporary timescales. Rapid changes in mo
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Dr John Clarke @jclarkepaleo.bsky.social · 03/08/2026
Our new paper introduces a fast & Bayesian state-dependent OU model in RevBayes that implements joint inference, to test adaptive macroevolutionary hypotheses. Congrats @prilau.bsky.social! Be sure to give her a follow & give her original tweet some love! Many more exciting PCMs in her future!
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Priscilla Lau @prilau.bsky.social · 30/07/2026
Our paper (also, my first first-author paper) is now available in MEE early view! In this study, we introduced a state-dependent Ornstein-Uhlenbeck model we implemented in RevBayes to test adaptive hypotheses in macroevolution. (1/3) besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
An efficient Bayesian phylogenetic approach for joint inference of continuous and discrete trait evolution under a state‐dependent Ornstein–Uhlenbeck model
Macroevolutionary adaptation of a continuous trait to different discrete states across species can be modelled using a phylogenetic state-dependent Ornstein–Uhlenbeck (OU) process. Existing infere...
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James McInerney @jomcinerney.bsky.social · 24/07/2026
Take a few minutes to read. This is the next in my series about what we learn from evolutionary biology. Free to read, as always. open.substack.com/pub/profmcin...
A beaver with the text "Niche construction: selection running in two directions", with the subtext: "We make the place where we will evolve". It is from profmcinerney.substack.com. The publication is called The Long Game"
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Dr Alex Bond @thelabandfield.bsky.social · 23/07/2026
After a bit of too-and-fro, here's the dirt. The only way we'll see real changes is clearly the "sunlight approach" so with that.... Read about the misguided policy at Marine Environmental Research - and how the editor doubled down. adriftlab.org/news/equalit...
adriftlab.org
Equality is not equity: why we have withdrawn our manuscript from Marine Environmental Research
We are withdrawing a manuscript from the journal Marine Environmental Research, and we want to explain why, publicly, because the issue is bigger than one paper.
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Jonathan Losos @jblosos.bsky.social · 21/06/2026
Robert Ricklefs - in memoriam dynamicecology.wordpress.com/2026/06/11/r...
dynamicecology.wordpress.com
Robert Ricklefs – in memoriam
Robert Ricklefs, a giant of ecology, passed away on Sunday. It is hard to overstate the extensive impact Bob had on the field. He was elected a member of the National Academy of Sciences in the US,…
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Matt Friedman @friedmanlab.bsky.social · 04/06/2026
Led by the incomparable Sanaa El-Sayed, a study out today in Science Advances throws open an important new window on marine fish diversity during the critical few million years following the K-Pg mass extinction. Below: artistic vision of the new fauna by Ian Baylatry.
Illustration of many fishes swimming in sunlit blue water.
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Alessio Capobianco @acapomorphic.bsky.social · 13/05/2026
My new paper with @gdarlim.bsky.social and @hoehna.bsky.social is now out in Proceedings B! We set out to compare two different approaches to time-calibrate a molecular phylogeny: traditional node calibrations, and unresolved FBD... @royalsocietypublishing.org doi.org/10.1098/rspb...
doi.org
How to date a molecular phylogeny: comparison of effective priors between node calibration and fossilized birth–death
Abstract. Time-calibrating a phylogenetic tree is a fundamental step in phylogenetic inference, as it allows the study of macroevolutionary processes such
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Phil Mannion @pdmannion.bsky.social · 11/05/2026
New paper on the earliest Cretaceous Brazilian sauropod dinosaur Triunfosaurus, possibly the oldest known titanosaur, along with a new perspective on this clade's radiation, casting doubt on previous biogeographic proposals🦕(+ @ismarcarvalho.bsky.social): doi.org/10.1093/zool... @es-ucl.bsky.social
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Jane @fossilyarns.bsky.social · 11/05/2026
Quick question: Does anyone know (or have!) any good resources for dinosaur footprint shapes and stride lengths? Possibly more sketch than photo but I’ll take anything! Got an outreach plan cooking 🧑‍🍳
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Rodrigo Figueroa @rodrigoichthys.bsky.social · 05/05/2026
Really happy to share I will be joining the Dept. of Anatomical Sciences at Stony Brook University this fall as an assistant professor!! My lab will focus on ray-finned fish neurocranial evolution, integrating fossils and living species. DM if you have interest in joining my new research group!
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Kai Caspar @nomascus.bsky.social · 04/05/2026
Description of a new species of blind mole-rat (Spalax lyapunovae sp. nov. ) from the northern Caucasus (photo by Oleg V. Brandler) vertebrate-zoology.arphahub.com/article/1809...
Photo of a male blind mole-rat of the newly described species on a meadow. Photo by Oleg V. Brandler
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Dr. Lilian Melo @lilianmelo.bsky.social · 05/04/2026
New paper alert‼️Collaboration with @nicrodemo.bsky.social and Fernando 🐝🌼✨️
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Benjamin Mills @bjwmills.bsky.social · 20/04/2026
Congrats to Zhen Xu for her awesome paper on CAM photosynthesis at the End Permian extinction - published today! www.nature.com/articles/s41...
Illustration of key plants through the Permian-Triassic boundary and comparison to modern lycopods
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Chris Martine | Plant People FTW @martinebotany.bsky.social · 29/04/2026
One more day for #Botany2026 early registration rates!!!! Get on it.
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Daniel Villar @daniel-a-villar.bsky.social · 24/04/2026
First paper of purely postdoctoral research published — Green crabs and climate change in North America rather than Titicaca Grebe and fisheries in the Andes. Rather different, but both interesting #biogeography #InvasionEcology #GlobalChangeBiology #fisheries doi.org/10.1007/s107...
doi.org
Decadal predictions of future habitat favourability of the European green crab (Carcinus maenas) on the Pacific Coast of North America - Hydrobiologia
The European green crab (Carcinus maenas) is a globally important invasive species. Since 1989, it has been spreading north from San Francisco Bay on the Pacific Coast of North America. Climate change is likely to lead to the species spreading further north into Alaskan and Arctic waters. Previous studies predicting its potential future distribution have focused on its range at the end of the century, under only one of multiple climate change scenarios. We used Bayesian Additive Regression Trees (BART) and benthic environmental variable predictors derived from the latest Intergovernmental Panel on Climate Change report to produce decadal predictions under four climate change scenarios; SSP1, SSP2, SSP4, and SSP5. We find that under all but the lowest emission scenarios, the European green crab will find suitable habitat as far north as the Seward Peninsula, and potentially, under the highest emission scenarios, into the Arctic Circle. This could have devastating consequences for the local ecology of the Pacific Coast of North America, for local economies dependent on fisheries, and for local communities, particularly indigenous communities. Increased monitoring in regions where green crab is likely to find favourable habitat could help with early detection, and potentially early functional eradication before populations establish themselves.
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Laura Lagomarsino, PhD @tropicalbotany.bsky.social · 22/04/2026
I'll be speaking at the International Conference of the German Society for Plant Sciences this September. Join us! Registration ends on April 30. botanik-tagung.de
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Dr John Clarke @jclarkepaleo.bsky.social · 20/04/2026
Midnight tonight is the deadline to register to vote in the UK local elections: www.gov.uk/register-to-... Here are the folks that can vote - do pass it onto them!
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Dr John Clarke @jclarkepaleo.bsky.social · 20/04/2026
Midnight tonight is the deadline to register to vote in the UK local elections: www.gov.uk/register-to-... Here are the folks that can vote - do pass it onto them!
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Bingcai Liu @bingcailiu.bsky.social · 16/04/2026
Our new preprint On a global scale, plants did not experience a catastrophic mass extinction during the Permian–Triassic boundary (PTB). However, they still suffered losses, with extinction rates reaching around 30%. doi.org/10.64898/202...
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Thais Vasconcelos @tvasconcelos.bsky.social · 16/04/2026
Postdoc opportunity in plant systematics + phylogenomics 🌿 my lab at the University of Michigan is recruiting for a Research Fellow working on species delimitation in neotropical myrtles. Full details + apply here (deadline April 30) careers.umich.edu/job_detail/2...
careers.umich.edu
Research Fellow - Vasconcelos Lab | U-M Careers
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Dr Tom Stubbs @drtlstubbs.bsky.social · 15/04/2026
#PhD opportunity at The Center for Integrative Paleobiology TIP UPJŠ in Košice. Origin and adaptive patterns of secondary flightlessness: an alternative evolution of birds. More info: tinyurl.com/2uhhbnt2 The application must be sent by 31.5.2026: lnkd.in/eaBCajVZ #palaeontology #palaeobiology
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Anna R Landim @annarl.bsky.social · 14/04/2026
Better late than never 😅 Happy to share that the final paper of my PhD was out this February in @journalofecology.bsky.social ! We asked: what drives the functional recovery of seed rain as tropical forests regnerate after disturbances? 🫘🌿 @reassemblynet.bsky.social #restoration #forestecol
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András Tóth-Czifra @minczifra.bsky.social · 12/04/2026
ORBÁN CONCEDED
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Dr John Clarke @jclarkepaleo.bsky.social · 10/04/2026
Deadline this Sunday!
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Dr John Clarke @jclarkepaleo.bsky.social · 10/04/2026
Deadline this Sunday!
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Dr Orla Bath Enright @orlabe.bsky.social · 09/04/2026
I'm excited to see @taphonomist.bsky.social's newest paper out @royalsociety.org. Our analytical investigations reveal an important cautionary tale about decay: what was believed to be the worlds oldest octopus remains (Pohlsepia) - is in fact, a highly decomposed nautiloid! Congrats again, Thomas!
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Dr Thomas Clements @taphonomist.bsky.social · 08/04/2026
I am so unbelievably proud to present 8 years of hard work: the worlds oldest octopus is not an octopus... Pohlsepia is actually a really rotten Nautiloid (but oldest soft tissue nautiloid ever found!). 🐙❌ royalsocietypublishing.org/rspb/article...
A picture of a small concretion (rock) with a white blob in the middle. this blob was described as the worlds oldest octopus and called Pohlsepia. Our research shows that hidden under the rock are teeth that confirm it is a nautiloid (a relative of modern nautiluses).An artistic rendering of the rotting Pohlsepia on the seafloor 310 million years ago. Sharks, fish and arthropods lurk in the background
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Dr John Clarke @jclarkepaleo.bsky.social · 08/04/2026
~5 days left to apply
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Flo Débarre @flodebarre.eurosky.social · 07/04/2026
In March, Matt Ridley gave the inaugural "Scientific Freedom Lecture" at NIH, on a lab leak origin of COVID-19. The talk was so full of misrepresentations, omissions, falsehoods and lies that I will need several blog posts to debunk it. Here's Part I: pandemonium.hypotheses.org/995 🧪 #covidorigin
pandemonium.hypotheses.org
Fact-checking Matt Ridley’s “Scientific Freedom Lecture” at NIH (Part I)
Matt Ridley, global warming skeptic and co-author with Alina Chan of a book promoting a lab origin of SARS-CoV-2, was invited by Jay Bhattacharya, the Director of the National Institutes of Health (NI...
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Emily V Griffith @e-v-griffith.bsky.social · 07/04/2026
Just 3 more people needed for us to reach 1k signatures!
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Dr John Clarke @jclarkepaleo.bsky.social · 06/04/2026
Live in the UK? Unsure if you have local elections? Check here: www.electoralcommission.org.uk/i-am-a/voter... You have till April 20th to register. Internationals living in the UK can also vote, depending on if you live in England, Wales, Scotland / NI Register here: www.gov.uk/register-to-...
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Yoselin Benitez-Alfonso @yoselin.bsky.social · 06/04/2026
Congratulations to Sibo and Ousmane for winning the @blackinplantsci.bsky.social Research Excellence Award! Well done! Post below
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Dr John Clarke @jclarkepaleo.bsky.social · 05/04/2026
1 week till deadline
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Julia McHugh @drjmchugh.bsky.social · 05/04/2026
c.org/kzxDtXPYS7
c.org
The Academy of Natural Sciences of Drexel University needs your support!
Can you spare a minute to help this campaign?
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PaleoJim @paleojim.bsky.social · 04/04/2026
The Academy of Natural Sciences ( @acadnatsci), the oldest & 1st nat. hist. museum in North America, is under threat! Sign petition at bit.ly/save-academy to tell president of @drexeluniv to fund one of the most important educational & research institutions in the world! @geosociety.bsky.social
bit.ly
Sign the Petition
The Academy of Natural Sciences of Drexel University needs your support!
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Dr John Clarke @jclarkepaleo.bsky.social · 30/03/2026
Postdoc in Macroevolution - Deadline April 12th - Join a team of Stuttgart botanists & myself to test drivers of Angiosperm diversification! Fully open process Submit cover letter, CV, 3 referees & publication list in a single PDF to postdoc-botany@smns-bw.de + 3 key papers (if possible) as PDF
naturkundemuseum-bw.de
Jobs | Staatliches Museum für Naturkunde Stuttgart
Offene Stellen
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Anne-Laure D 🌿 @aldpaleo.bsky.social · 02/04/2026
📣📣 The 12th European Paleobotany and Palynology Congress will take place September 20-24 in Münster 🇩🇪 🌿⛏️ Abstract submission will be opened from mid-April to May 31. All the information is now online here: www.uni-muenster.de/GeoPalaeonto... #paleobotany #palynology #palaeobotany
uni-muenster.de
European Palaeobotany and Palynology Conference
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Marten Winter @smartenwinter.bsky.social · 02/04/2026
Fantastic & amazing collaboration & research project about modelling & predicting the future of our global floras in a world of Plant invasions! Almost 10.000 SDMs & range projections😱😍💪
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MU-Peter Shimon 🀄 @mu-peter.bsky.social · 23/03/2026
Female birds more likely to sing when extended family help Territoriality modulates the coevolution of cooperative breeding and female song in songbirds🧪 www.nature.com/articles/s41... Cooperative breeding shapes the evolution of vocal communication differently based on territorial context and sex
Phylogeny showing the classifications of cooperative breeding (outer circle) and female song (inner circle) for 1,041 Oscine species.
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Dr John Clarke @jclarkepaleo.bsky.social · 30/03/2026
Postdoc in Macroevolution - Deadline April 12th - Join a team of Stuttgart botanists & myself to test drivers of Angiosperm diversification! Fully open process Submit cover letter, CV, 3 referees & publication list in a single PDF to postdoc-botany@smns-bw.de + 3 key papers (if possible) as PDF
naturkundemuseum-bw.de
Jobs | Staatliches Museum für Naturkunde Stuttgart
Offene Stellen
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Alexander Schmidt-Lebuhn @anschmidtlebuhn.bsky.social · 11/11/2025
We have expanded our target capture dataset of the Senecio inaequidens - S. madagascariensis complex to a global scale. More clarity on the areas of origin of invasive madagascariensis, but also raising new questions. doi.org/10.1007/s105... @biolinvasions.bsky.social #asteraceae #compositae #weeds
doi.org
Phylogenomics and genetic admixture of the invasive fireweed complex (Senecio inaequidens–Senecio madagascariensis) at a global scale - Biological Invasions
The southern African Senecio inaequidens–S. madagascariensis complex, (‘fireweed complex’), contains several species that have established as weeds outside of their native ranges. Senecio madagascarie...
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Dr John Clarke @jclarkepaleo.bsky.social · 24/03/2026
Got last minute, sale price, resale tickets to see Poppy in Berlin tomorrow night :D
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Matt Friedman @friedmanlab.bsky.social · 15/03/2026
Polypterids (bichirs + ropefish) are the sister lineage of all other living ray-finned fishes. Restricted to Africa today, fragmentary fossils show they inhabited South America until at least the Paleocene. Now Late Cretaceous finds add Madagascar to the list: www.sciencedirect.com/science/arti...
sciencedirect.com
Late Cretaceous bichirs from Madagascar provide the first documentation of Polypteriformes (Actinopterygii, Cladistia) in Eastern Gondwana
Fossil polypterid elements have been recovered from the Upper Cretaceous (Maastrichtian) Maevarano Formation of Madagascar. These elements document th…
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