Reposted by Rui BorgesCasey Dunn @caseywdunn.bsky.social · 25/08/2026My new book, Phylogenetic Biology, is now published. Available online for free at dunnlab.org/phylogenetic... . Physical copies can be purchased at shop.lightningsource.com/b/085?params... or your favorite bookstore. 12315160
Rui Borges @ruiborges23.bsky.social · 19/08/20261/4 Excited to share that our paper "Phylogenetic inference with not-so-rare mutations and tiny organisms" has been accepted in Systematic Biology! 🧬🦠 academic.oup.com/sysbio/artic...academic.oup.comPhylogenetic inference with not-so-rare mutations and tiny organismsAbstract. A common assumption in mathematical models of molecular evolution is that mutations are rare. One example is the boundary mutation assumption, wh 166
Rui Borges @ruiborges23.bsky.social · 22/08/2025Glad to share my work on phylogenetic inference for wee, tiny organisms (or highly diverse): the infered topologies seem largely unaffected by unaccounted recurrent mutations, but branch lengths, and mutation-selection usage biases, are significantly impacted. #eseb #eseb2025 0121
Rui Borges @ruiborges23.bsky.social · 20/08/2025@janekay27.bsky.social presenting her work on merging time scales of evolution to infer adaptive evolution. Great talk! #eseb #fwf 051
Rui Borges @ruiborges23.bsky.social · 07/08/2025This might sound naive, but I once genuinely believed that the European Union stood firmly for freedom, the rule of law, and human rights. 000
Rui Borges @ruiborges23.bsky.social · 08/07/2025I love engaging in outreach activities with math-enthusiastic students, and I always take the opportunity to introduce them to stochastic processes. One process I particularly enjoy teaching is the Gambler’s Ruin. @uniofstandrews.bsky.social #standrews #smmb #statistics #maths 130
Reposted by Rui BorgesSandra Oliveira @sandra-oliveira.bsky.social · 20/05/2025Happy to share a PhD opportunity in my new lab at the University of Zurich! Application deadline: June 30. Do not hesitate to contact me for any questions! 11925
Reposted by Rui BorgesAylwyn Scally @aylwyn-scally.bsky.social · 14/05/2025Are university lectures on the way out? It seems to me we have to rethink what their purpose is, if any. Because an increasing number of students seem to place relatively little value on them, at least as a real-time experience. www.varsity.co.uk/comment/29679varsity.co.ukLectures are optional so give us the recordingsKatie Nicholson argues that faculties must make some changes if they expect students to attend lectures regularly 4192
Reposted by Rui Borgesjydutheil.bsky.social @jydutheil.bsky.social · 02/02/2025New study from the Lab! Jinyang Liang assesses the possibility of inferring ancestral alleles (aka allele polarization) without outgroup sequence, using the ancestral recombination graph (ARG) alone. Here are some of our findings. (1/5) 165
Reposted by Rui BorgesChris Sutherland @chrissuthy.bsky.social · 29/01/2025Now accepting applicants for 25-26 intake of our #StatisticalEcology MSc: bit.ly/3ooHNyc. A unique opportunity to develop skills at the interface of #statistics and #ecology (some partial scholarships available too). Please help me share! 03645
Rui Borges @ruiborges23.bsky.social · 27/01/2025Glad to see this out today in MEE! The rarity of mutations and the inflation of bacterial effective population sizes besjournals.onlinelibrary.wiley.com/doi/10.1111/... #popgen #populationgenetics #evolution #bacteriagenomics #bacteria #microsky #statsstandrews @uniofstandrews.bsky.socialbesjournals.onlinelibrary.wiley.comThe rarity of mutations and the inflation of bacterial effective population sizesMutations are fundamental for evolution, and their mathematical modelling in population genetics heavily relies on our perception of their frequency and the timescale over which they occur. A comm... 23212
Rui Borges @ruiborges23.bsky.social · 10/01/2025Glad to present my work on the implications of different mutation models in #popgen and #phylo inference at #PopGroup58 in Sheffield (even tried my hand at cèilidh dancing). Kudos to the organizers for this excellent meeting! #statsstandrews 060
Reposted by Rui BorgesGenome Biology and Evolution @genomebiolevol.bsky.social · 26/10/2023Genome Biology and Evolution is excited to now be on Bluesky. Please help us by recommending accounts and feeds for us to follow! 56332
Rui Borges @ruiborges23.bsky.social · 05/12/2024Super proud of @janekay27.bsky.social for receiving an OEAW grant to continue their PhD work on codon evolution for another two years 🥳 It was a pity I couldn't be there in person for the award ceremony, but @bio-diogo.bsky.social did a fantastic job stepping in and capturing some great photos: 110
Reposted by Rui BorgesLara Radović @larad1010.bsky.social · 20/11/2024Update on our latest research featured in PNAS! 🐴 ✨ We used Y chromosome to explain the legacy of Oriental horses, embedded in a 1,500-year-old Crown lineage 👑 spread across continents and centuries! 🌍 Check it out 😊pnas.orgThe global spread of Oriental Horses in the past 1,500 years through the lens of the Y chromosome | PNASSince their domestication, horses have accompanied mankind, and humans have constantly shaped horses according to their needs through stallion-cent... 021
Rui Borges @ruiborges23.bsky.social · 23/11/2024A problem for a stormy, rainy day: #maths #mathproblems #OPM 031
Reposted by Rui BorgesDavide De Biasio @davidedebiasio.bsky.social · 22/11/2024Scientists, when do we start lobbying for #Bluesky to implement native LaTeX support? #science #physics #mathematics 🧪⚛️ 810914
Reposted by Rui BorgesBert van der Veen @vdveenb.bsky.social · 10/11/2024go.bsky.app/NiaWN5i I'm happy to receive suggestions for this. 509154
Reposted by Rui BorgesMichael Landis @landismj.bsky.social · 19/11/2024Here's a starter pack for early career researchers in evolutionary biology. I prioritized the most-junior folks, and this list quickly filled up with undergrads, grad students, and postdocs. Might do another list later, but I'm tired. Have fun everyone! 🐒 #evobio go.bsky.app/MzND7nX 39265154
Rui Borges @ruiborges23.bsky.social · 18/11/20241/9 I’ve seen many posts here asking whether Bluesky is an echo chamber. I don’t think so, and I’d argue that the very fact we’re questioning it is already an indication that it’s not. I’d like to bring up Nguyen’s paper on the differences between epistemic bubbles and echo chambers:cambridge.orgECHO CHAMBERS AND EPISTEMIC BUBBLES | Episteme | Cambridge CoreECHO CHAMBERS AND EPISTEMIC BUBBLES - Volume 17 Issue 2 120
Reposted by Rui BorgesMichael Landis @landismj.bsky.social · 17/11/2024I'm building a Starter Pack of Early Career Evolutionary Biologists. It's hard to gather usernames using the search tool. Please add your name to this thread if you want to be added! 13619265
Rui Borges @ruiborges23.bsky.social · 16/11/2024In my free time, I love solving math competition problems that don’t require extensive prior knowledge. They're mostly based on intuition and are super fun to tackle! Here's one from the Portuguese Mathematical Olympiad -- can you guess the answer? #maths #mathproblems 130
Rui Borges @ruiborges23.bsky.social · 13/11/2024Hi Bluesky! New here and excited to connect with others, especially fellow scientists! I'm a lecturer in Statistics at the University of St Andrews and my research involves merging mathematical models with statistical methods to tackle evolutionary questions. 1101