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Alvaro Fueyo

@afueyo.bsky.social
598 followers 558 following 31 posts

Applying and developing DNA-based molecular tools for the study of ecosystems and biodiversity. Working at #TaxusMedioAmbiente. Spain. Metabarcoding | eDNA | Phylogenetics | Pop Gen

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Reposted by Alvaro Fueyo
Lynsey Harper @lynseyrharper.bsky.social · 15/04/2026
Tom Hughes presents LIMPET - a new pipeline for detecting erroneous sequences in reference databases for #metabarcoding. Some databases contain more errors than others, but even highly curated databases can contain errors that will impact taxonomic assignment and ecological inference #UKDNAWG26
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Journal of Applied Ecology @jappliedecology.bsky.social · 10/04/2026
📖Published! Comparing passive and active kelp restoration techniques along an urbanised coast🌿 Passive restoration through water quality improvements facilitates substantial kelp gains, offers increased scalability and provides broader ecosystem benefits across seascape scales🌊 🔎 buff.ly/3KHXyVt
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Alvaro Fueyo @afueyo.bsky.social · 23/03/2026
Our new paper is out in Oikos. We link the evolutionary history of seagrasses with the latitudinal distributions of extant species, showing that ancestral niche legacy still shapes present-day ranges and diversification patterns. doi.org/10.1002/oik.11820
doi.org
Connecting the distribution and diversification of marine plants
Integration of the evolutionary history with distribution of extant species is necessary to explain present-day diversity, particularly for ‘foundation' species, such as seagrasses, which create habi...
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Reposted by Alvaro Fueyo
GES4SEAS MOOCs @ges4seas-mooc.fediscience.org.ap.brid.gy · 04/02/2026
Now, it has achieved a good ecological status, sensu #WFD, for most of the ecosystem components, such as #phytoplankton, #benthos or #fish…. This has happened in many other European countries, thanks to the #WFD #GES4SEAS #MOOC #oceanoptimism
graphic describing the recovery of different ecosystem components, by Elliott, M., Á. Borja, R. Cormier, 2025. Managing marine resources sustainably – But how do we know when marine management has been successful? Ocean & Coastal Management, 265: 107623.
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Mark A. Hanson @hansonmark.bsky.social · 13/01/2026
We've got ISSUES. Literally. We scraped >100k special issues & over 1 million articles to bring you a PISS-poor paper. We quantify just how many excess papers are published by guest editors abusing special issues to boost their CVs. How bad is it & what can we do? arxiv.org/abs/2601.07563 A 🧵 1/n
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Natalie Cooper @nhcooper123.bsky.social · 16/12/2025
Excited to launch the new improved Reproducible Code guide from @britishecologicalsociety.org @methodsinecoevol.bsky.social FREE online here! www.britishecologicalsociety.org//wp-content/... Amazing work by some very talented ECRs. We hope it’s useful!
Book cover for Reproducible Code guide. The cover has a red background with a large yellow-bodied black-headed stag beetle.
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Reposted by Alvaro Fueyo
Anthony Ricciardi @ecoinvasions.bsky.social · 04/11/2025
environment.ec.europa.eu/news/conserv...
environment.ec.europa.eu
Conservation paradoxes: 36 species which are invasive in some areas but still need protecting elsewhere.
Issue 623: Some species are invasive and economically costly in some areas, but conservation priorities in others. A study identifies 36 such species, finding them to be conservation priorities due to...
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ARPHA Preprints @preprints.arphahub.com · 31/10/2025
DNA barcoding reference dataset revealed overlooked diversity and clarified biogeography of fishes in the largest European river system – Volga River. 🔗 doi.org/10.3897/arph... @mbmg.pensoft.net
doi.org
DNA barcoding reference dataset revealed overlooked diversity and clarified biogeography of fishes in the largest European river system – Volga River
This study represents the first thorough genetic assessment of freshwater fishes from the Volga River basin – the longest (3,690 km) river in Europe. DNA barcode sequences (COI) were studied in ...
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Alvaro Fueyo @afueyo.bsky.social · 22/10/2025
🌊 A few weeks ago I shared my PhD roadmap on metabarcoding for river biomonitoring — with a focus on peninsular Spain. What’s working, what isn’t, and what’s next for our freshwater ecosystems. 🔬
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Reposted by Alvaro Fueyo
Zsófia Horváth @zsofiahorvath.bsky.social · 21/09/2025
Looking for openly available: - before-after data in space - with a restoration measure inbetween (e.g. dam/invasive spec. removal, urban green space creation...) - min. 10 sites (quadrats / random places along a stream / ponds...) - species data, env. data of some sort, GPS coordinates
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MARE @marescience.bsky.social · 04/10/2025
New Publication in The Journal of Fish Biology! "Hidden in the gut: Metabarcoding reveals overlooked predation by the invasive European catfish (Silurus glanis)" onlinelibrary.wiley.com/doi/10.1111/...
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Alvaro Fueyo @afueyo.bsky.social · 04/10/2025
Had a great time at the SEM Malacology Forum presenting two research projects — one poster on the restoration of the Piles River and an oral communication on the sequencing of Iberian freshwater molluscs. 🐚🌊 #Malacology #Biodiversity #Metabarcoding
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 03/10/2025
DNA metabarcoding identifies more invertebrate species under the Water Framework Directive than conventional methods, showing promise for faster and finer river health monitoring in Slovakia’s Carpathian streams. 🔗 doi.org/10.3897/mbmg...
doi.org
Evaluating the potential of DNA metabarcoding for ecological status assessment under the Water Framework Directive: A case study on benthic invertebrates from Western Carpathian streams
Routine biomonitoring under the Water Framework Directive (WFD) follows a conventional methodology primarily based on the morphological identification of taxa within the five biological quality elemen...
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Reposted by Alvaro Fueyo
Florian Altermatt @florianaltermatt.bsky.social · 29/09/2025
In massive #collaborative #effort, we assembled published & unpublished #fish 🐟 #eDNA 🧬 metabarcoding datasets, covering ~2000 sampling sites/>100 river systems globally. 🐟 🐠 🐡 🌐 🌍 Now results out in 2 #parallel #preprints @biorxiv-ecology.bsky.social #aquatic #biodiversity #meta-analysis 1/6🧵
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Alvaro Fueyo @afueyo.bsky.social · 27/09/2025
📢 We’ve just published the discussion & roadmap from my PhD thesis: a critical look at how metabarcoding of macroinvertebrates can (and cannot yet) be used for routine river biomonitoring. Let me walk you through the key take-homes, and where the method still needs work. 🧵 doi.org/10.1002/2688...
doi.org
Technical challenges in the implementation of macroinvertebrate DNA metabarcoding in river biomonitoring: A case study from peninsular Spain—Advantages, limitations and roadmap
This study evaluates the opportunities and challenges of using DNA metabarcoding of river macroinvertebrates for routine ecological status assessment under the EU Water Framework Directive. By reanal....
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Alvaro Fueyo @afueyo.bsky.social · 17/09/2025
Our new paper shows how a small Iberian stream, dry for 50 years, bounced back to good ecological status in <2 years after environmental flows were restored. 🌊🪱 👉 doi.org/10.1111/rec.70198 #RiverRestoration #EnvironmentalFlows #FreshwaterEcology
doi.org
Back to life after 50 years: effects of environmental flow restoration on macroinvertebrate biodiversity and river ecological status. A case study of the Valseco stream, Spain
The construction of dams and reservoirs to meet increasing water and electricity demands has significantly altered many natural river flows, posing threats to the ecological integrity of freshwater e...
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Philipp Bayer @philippbayer.bsky.social · 06/09/2025
It's actually amazing how long I've been waiting for this. No more guessing which column has the querycovperc! Plus, gzipped fastas for makeblastdb! Finally!
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Rayan Chikhi @rayanchikhi.bsky.social · 03/09/2025
🌎👩‍🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵 Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open. doi.org/10.1101/2024...
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Philipp Bayer @philippbayer.bsky.social · 29/08/2025
This is great - we a huge need in the #eDNA community to have data-informed standards for eDNA identity cutoffs, not just the bog-standard 97% besjournals.onlinelibrary.wiley.com/doi/full/10.... For Chordata there is no cutoff that leads to 0% error when assigning species!! (Table S4)
besjournals.onlinelibrary.wiley.com
Taxon‐specific BLAST percent identity thresholds for identification of unknown sequences using metabarcoding
The identification of organisms in environmental samples using metabarcoding relies on factors such as taxonomic assignment methods, genetic markers, reference databases and confidence thresholds ...
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Reposted by Alvaro Fueyo
Science Magazine @science.org · 22/08/2025
Researchers have filmed thousands of climbing catfish scaling waterfalls, providing a rare insight into the daring migration of an enigmatic fish. Learn more: scim.ag/4lDlFux
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Randall Munroe @xkcd.com · 22/07/2025
Replication Crisis xkcd.com/3117/
4-panel comic. (1) [Person 1 with ponytail flanked by person with short hair and another person speaking into microphone at podium] PERSON 1: In the early 2010s, researchers found that many major scientific results couldn’t be reproduced. (2) PERSON 1: Over a decade into the replication crisis, we wanted to see if today’s studies have become more robust. (3) PERSON 1: Unfortunately, our replication analysis has found exactly the same problems that those 2010s researchers did. (4) [newspaper with image of speakers from previous panels] Headline: Replication Crisis Solved
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Methods in Ecology and Evolution @methodsinecoevol.bsky.social · 16/07/2025
📖Published📖 Sources of uncertainty in DNA metabarcoding of whole communities: Implications for its use in biomonitoring 🧬 🌍 🧪 Find the article here 👇 buff.ly/6zJRh9R
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Martin A. Nuñez @martin-nunez.bsky.social · 04/07/2025
We want to thank reviewer #2 for the very constructive comments. We were able to incorporate all of them. The manuscript is now much more clear.
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Birds of the World | The Cornell Lab @birdsoftheworld.bsky.social · 11/06/2025
A monumental taxonomy unification effort has just been published - thanks to all those who've collaborated for years to make this happen! birdsoftheworld.org/bow/news/avi...
birdsoftheworld.org
Birds of the World - AviList: A Unified Global Checklist of the World’s Birds is Now Available
AviList, a unified global checklist of birds, that provides the most current and authoritative taxonomy of birds around the world was released today by experts in taxonomy, nomenclature, and bioinform...
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Alvaro Fueyo @afueyo.bsky.social · 06/06/2025
🧵 #HiloTesis | ¿Cómo se mide el estado de un río? ¿Puede el ADN decirnos si un río está sano? ¡Te cuento cómo he aplicado tecnologías basadas en ADN para evaluar la salud ecológica de los ríos en la Península Ibérica!
Álvaro Fueyo muestreando macroinvertebrados bentónicos en el río Nalón a su salida de la cueva de Deboyu en Asturias (España).
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Reposted by Alvaro Fueyo
Journal of Applied Ecology @jappliedecology.bsky.social · 05/06/2025
Any excuse to post this blast from the past from the last AEET conference that I went to in Almería. Still probably the best poster I've seen in the last few years courtesy of @ibartomeus.bsky.social. #SIBECOLAEET2025
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Biological Recording Company @biologicalrecording.co.uk · 19/11/2024
The taxonomic biases in biodiversity data are growing over time. The amount of data we are collecting is growing, but the biases get bigger. We need to make a conscious effort to study the understudied! #SciComms #Science #Taxonomy 🧪 image from Troudet et al 2018 @natureportfolio.bsky.social
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spencer roberts 🦈 @unpopularscience.bsky.social · 09/05/2025
I will forever be haunted by this footage. Trawling has only been filmed underwater a few times in documentary history, and never with such clarity. What’s so heart-rending about these shots is watching how the animals don’t just get swept up — they swim for their lives. 🌎🦑🧪
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Gabby Palomo, PhD @gabspalomo.bsky.social · 26/12/2024
Ok people. I’m drawing silhouettes this afternoon. If you have a paper coming up and you are in need of a #silhouette please let me know and I will have it ready today. As always I upload all my silhouettes to phylopic.org I also have tutorials on how to put a silhouette in a plot in R.
phylopic.org
PhyloPic
PhyloPic is an open database of free silhouette images of animals, plants, and other life forms, available for reuse under Creative Commons licenses. Download silhouettes for use in educational materi...
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Lisa Wolany @lisa-wolany.bsky.social · 20/12/2024
Can insect bulk samples be used in #metabarcoding without homogenising them? Our research shows: it’s technically possible but yields poorer data and is more expensive and time-consuming. Paper out now: @mbmg.pensoft.net mbmg.pensoft.net/article/1298... @leeselab.bsky.social #nondestructivelysis
mbmg.pensoft.net
Homogenization of insect bulk samples yields more comprehensive yet comparable biodiversity data than non-destructive lysis
The rapid advancement of molecular biodiversity monitoring tools, particularly DNA metabarcoding, has improved specimen identification in bulk samples, such as those from Malaise traps, where traditio...
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Florian Leese @leeselab.bsky.social · 22/11/2024
Let‘s try a #metabarcoding starter pack to nucleate people interested. Welcome molecular #biodiversity monitoring people. Let’s try to keep us posted on updates regarding papers, projects, methods. Happy weekend.☀️#eDNA go.bsky.app/Qvqgknp
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Jonathan Tonkin @jdtonkin.bsky.social · 11/11/2024
Left the other place run by Trump's buddy? Here's a starter pack of freshwater scientists to get you started. Also, if you're a freshwater scientist and want to be added, let me know. Still space available. go.bsky.app/K5ubDhb
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georgia 🏴󠁧󠁢󠁷󠁬󠁳󠁿 @blahttodea.bsky.social · 11/11/2024
hey everyone! i made a list of some useful starter packs (primarily biology/earth sciences with a few bonus things thrown in) to share with friends who have joined bsky in the last week and thought it may be useful for some people here too! 🌍🧪 #SciSky #BioSky docs.google.com/document/d/1...
docs.google.com
Starter packs
BIOLOGY Ecology Macroecology https://go.bsky.app/GBn9pNZ Global ecology https://go.bsky.app/V6tN4cv Trait based ecology and evolution https://go.bsky.app/PThMXeX Invasion biology https://go.b...
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Mubashar “Mubs” Iqbal @mubashariqbal.com · 11/11/2024
Starter packs are genius, but I was surprised there wasn't a list of them for people to find. So I built it: blueskydirectory.com/starter-pack... The website monitors the packs being shared and adds the ones it finds to the database. Missed your stater pack? Message me and I'll get it added.
blueskydirectory.com
All - Bluesky Directory
A curated collection of all things relating to the Blue Sky social media platform.
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Dr Angel Borja @drangelborja.bsky.social · 16/11/2024
Look at our new paper: #DNA-based marine #benthic #assessment methods can perform as morphological ones, but an intercalibration is needed #GES4SEAS Obama-Next #uraEJGV #WFD fully open access👇 www.sciencedirect.com/science/arti...
sciencedirect.com
DNA-based marine benthic assessment methods can perform as morphological ones, but an intercalibration is needed
There is an increasing need for legislation worldwide to monitor and assess the ecological status of marine ecosystems, due to increasing pressures fr…
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Alvaro Fueyo @afueyo.bsky.social · 17/11/2024
ALERT! We’ve just confirmed the first record of the invasive Vespa soror (Southern Giant Hornet) in Europe, identified through both morphology and genetic tools. Early detection is key! 🐝 #InvasiveSpecies #Genetics #Biodiversity #Vespasoror doi.org/10.1002/ece3...
doi.org
Early Alarm on the First Occurrence of the Southern Giant Hornet Vespa soror du Buysson, 1905 (Vespidae) in Europe
First occurrence of the Asian southern giant hornet Vespa soror in Europe. We present a detailed description, combining morphological and molecular traits, as well as key information about its identi...
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Alvaro Fueyo @afueyo.bsky.social · 17/11/2024
Thrilled to share that my thesis is now published! 🎉 Assessing DNA metabarcoding and environmental DNA for biomonitoring fluvial ecosystems using macroinvertebrates in peninsular Spain. You can access it here: dx.doi.org/10.13140/RG.... 🌱🔬 #Macroinvertebrates #eDNA #Metabarcoding #FluvialEcosystems
dx.doi.org
(PDF) Assessing DNA metabarcoding and environmental DNA for biomonitoring fluvial ecosystems using macroinvertebrates in peninsular Spain
PDF | Fluvial ecosystems play a vital role in supporting biodiversity, providing freshwater, and sustaining human societies. Despite their importance,... | Find, read and cite all the research you nee...
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Dr.Kat Stewart @ecoevoedna.bsky.social · 17/11/2024
I started an #eDNA starter pack as one didn’t exist yet. Feel free to message me to get your name added. Open to all! go.bsky.app/U2vgV5Q
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