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Metabarcoding and Metagenomics

@mbmg.pensoft.net
381 followers 158 following 137 posts

Open-access, peer-reviewed journal for metabarcoding & metagenomics research. Welcomes submissions documenting all types of outcomes throughout the research cycle. Published by @pensoft.net. Powered by @arphahub.com. Website: mbmg.pensoft.net.

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Metabarcoding and Metagenomics @mbmg.pensoft.net · 9h
🌍 The largest-scale genetic survey of tropical soil organisms has been completed in French Guiana, revealing nearly 70,000 different species of bacteria, fungi, and insects across diverse habitats from rainforests to urban areas. Access the full #openaccess data paper: doi.org/10.3897/mbmg.10.188340
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 28/09/2026
🪲 The gut bacteria of Alpine dung beetles have been mapped, revealing that each beetle species hosts its own distinctive microbial community that plays a crucial role in breaking down dung and cycling nutrients in mountain ecosystems: doi.org/10.3897/mbmg.10.194720
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 28/09/2026
Researchers developed a genus-specific eDNA assay to detect Australia's two endangered eyeless cave gudgeons (Milyeringa spp.), hard-to-monitor fish restricted to groundwater: doi.org/10.3897/mbmg...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 23/09/2026
📍 We're featured at @pensoft.net's booth at #TDWG2026, running this week in Oslo! 📚 Come and find out more about the scope of our journal and how we can support your research. @tdwg.org #BiodiversityData
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 17/09/2026
A new #eDNA study of a Siberian bog finds #fungal diversity isn't concentrated in peat, as assumed - plant litter is richest, roots most specialized. Total richness (~11,500 SH) vastly exceeds the 208 species found by traditional sporocarp surveys: doi.org/10.3897/mbmg...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 16/09/2026
🔍Continuing our @peerreviewweek.bsky.social series on "Peer Review Capacity: Volume, Speed, and Quality" Prof. Florian Leese, editor-in-chief of our journal also raised an important point about where current tools fall short 👇 📖 Full blog: blog.pensoft.net/2026/09/11/p... #PRW2026 #peerreview
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 15/09/2026
🐋🧬Researchers tested #eDNA extraction methods, compared two DNA polymerases, and built MVeM - an open-source #bioinformatics pipeline - for monitoring marine vertebrates. Direct filter extraction beat bead-beating; polymerase choice depended on target group. Read more: doi.org/10.3897/mbmg...
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Pensoft @pensoft.net · 14/09/2026
📍 We're at #NordicOikosGfÖ2026 in Odense, Denmark, this week, showcasing our work as a consortium member of @obsgession.eu and presenting our ecology-focused portfolio. 🤝 We look forward to meeting you all at our designated booth!
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 14/09/2026
New study compared microbial communities in produced water vs. reservoir fluids across four North Sea oil fields using 16S rRNA and metagenomic sequencing. Researchers found that the produced water alone is an unreliable proxy for the true reservoir microbiome. Full details: doi.org/10.3897/mbmg...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 08/09/2026
🌱 We've touched down in Brussels for #NeoBiota2026 - the 14th International Conference on Biological Invasions! Here through 11 Sept. Come chat with our team about Pensoft Publishers' publishing portfolio - journals, books & conference services. We'd love to connect 🤝
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 03/09/2026
🧬 New study uses #DNA #metabarcoding across 59 sites to ask why some aquatic insects are more common than others. Widespread species had greater genetic diversity overall, but local species & genetic diversity weren't linked, pointing to gene flow and species sorting as key drivers.
doi.org
Haplotype-level metabarcoding to study the relationship between species occurrence and population genetic structure at the catchment scale in aquatic insects
A longstanding question in ecology and evolutionary biology is which evolutionary mechanisms explain why some species occur frequently while others do not. Previous studies have investigated this phen...
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Biodiversity Data Journal @bdj.pensoft.net · 03/09/2026
🪲 New ~50,000-record #dataset (1860s-2025) maps Midwest US #stonefly diversity: 157 species, 21 new state records. But every state has lost species since 1970 - Illinois hardest hit (16 extirpations) - reflecting 2 centuries of habitat change. doi.org/10.3897/BDJ....
doi.org
Stoneflies (Insecta, Plecoptera) of the Midwest, USA: species checklist derived from nearly 170 Years of collection records
The landscape in the Midwest, USA (limited to the states of Illinois, Indiana, Iowa, Michigan, Minnesota, Ohio and Wisconsin) has undergone dramatic shifts from the historic natural settings to agricu...
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Pensoft @pensoft.net · 03/09/2026
📍 We recently attended the 4th BioSyst.EU meeting in Uppsala, Sweden, held in the very city where taxonomy was born! ➡️ Read the full recap on our blog: blog.pensoft.net/2026/09/03/p... #BioSyst2026
blog.pensoft.net
Pensoft at the 4th BioSyst.EU Meeting 2026 | Blog
The 4th BioSyst.EU meeting took place in Uppsala, Sweden, from 17 to 19 August 2026, organised by the Swedish Systematics Association, in collaboration with Uppsala University.
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 01/09/2026
🧬The OPENBAR initiative (a @biogeneurope.bsky.social project) is launching two efforts to build a community #DNA #barcoding field guide: a 𝐥𝐢𝐯𝐞 𝐟𝐨𝐫𝐮𝐦 (𝐒𝐞𝐩𝐭 𝟏𝟓, 𝟏𝟒-𝟏𝟔 𝐂𝐄𝐓) and a 𝐬𝐮𝐫𝐯𝐞𝐲 on lab realities. Open to researchers across the field. Register for the online forum: mbmg.pensoft.net/news/1456
mbmg.pensoft.net
Join BGE+ in developing a DNA barcoding field guide
DNA barcoding has reshaped biodiversity research, but it still doesn't come with a manual. Researchers are largely left to figure out best practices on their own, often the hard way. Now, the...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 31/08/2026
#Climatechange is shifting where #pollinators live, but not all pollinators do equal work. This new study pairs species distribution models with pollen deposition data to track mango pollinators in South Africa, finding declines in both pollinator numbers and pollination service under climate change
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The International eDNA Standardization Task Force (iESTF): toward development of inclusive international standards for eDNA biodiversity monitoring
Environmental DNA (eDNA) analysis has emerged as a transformative tool for biodiversity assessment and environmental monitoring, offering a non-invasive, cost-effective approach to detecting species a...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 28/08/2026
#Metabarcoding of 2,000+ aquatic #invertebrates from Czech fish ponds uncovered 66 microsporidian OTUs - over 95% with no match to known species! Shared OTUs across host #taxa hint at multi-host strategies, revealing huge hidden diversity of these parasites in freshwater. 🦠 doi.org/10.3897/mbmg...
doi.org
Microsporidian diversity and host associations in aquatic invertebrate communities of South Bohemian fish ponds revealed by metabarcoding
Microsporidians are highly specialised intracellular parasites adapted to an obligate parasitic lifestyle. Although more than 1,500 species have been described to date, their true diversity is likely ...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 27/08/2026
Last chance to catch us at the 15th European Conference on Ecological Restoration #SERE2026! 👋 @pensoft.net is in Brest, France, through August 28 - swing by, say hello, and check out our diverse journal portfolio and what we've been working on before we head back! 🌍📚
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 24/08/2026
Meet @pensoft.net at #SERE2026 in Brest, France, through August 28! 👋 Our team is on the road again and would love to share more about our work, and connect with fellow researchers, practitioners, and restoration enthusiasts.
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 24/08/2026
🎉We are pleased to announce that the journal Metabarcoding and Metagenomics is now also on #LinkedIn. 👉Follow us there to stay up to date on the latest #research findings, news, and events related to the journal: www.linkedin.com/showcase/met...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 18/08/2026
🔑 We were delighted to attend a keynote lecture by Chair of our Advisory Board, Paul Hebert, at #BioSyst2026, on how DNA barcoding and biomonitoring could complete the inventory of Earth's species within two decades! @systassn.bsky.social
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 18/08/2026
💻 We loved attending Daniel Lundin's talk at #BioSyst2026 on nf-core/ampliseq and nf-core/phyloplace, automated Nextflow pipelines making biodiversity bioinformatics more accessible. 👉 Lundin is an author in our journal! Check out his co-authored paper here: mbmg.pensoft.net/article/84960/
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 18/08/2026
🐝 Delighted to have welcomed Alexander Edwards to the @pensoft.net booth at #BioSyst2026 yesterday! 📄 Alexander is an author on a paper in our journal: mbmg.pensoft.net/article/1419... 👉 Access his guest blog post here: blog.pensoft.net/2025/09/11/t... (1/2)
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 17/08/2026
🎉 It was a pleasure to meet Oleksandr Holovachov at #biosyst2026! 👉 Holovachov is an author in our journal - you can access their paper focusing on the Store Mosse National Park in the south of Sweden here: mbmg.pensoft.net/article/1113... @systassn.bsky.social
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 17/08/2026
📢 We're at the 4th BioSyst.EU Meeting in Uppsala, Sweden - #biosyst2026! 🤝 Stop by the @pensoft.net booth to learn more about our journal. @systassn.bsky.social
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Pensoft @pensoft.net · 14/08/2026
Pensoft is heading to Nordic Oikos-GfÖ 2026! 👀 📍Where? - Odense, Denmark 🗓️When? - 13-17 September 👉Learn more: aem.pensoft.net/news/1443 @nordicoikos.bsky.social, @gfoesoc.bsky.social, @obsgession.eu
aem.pensoft.net
Pensoft to Attend Nordic Oikos-GfÖ 2026 in Odense, Denmark
Pensoft is heading to the Nordic Oikos-GfÖ 2026 conference, taking place 13-17 September in Odense, Denmark. Organised jointly by the Nordic Society Oikos and the Ecological Society of Germany, A...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 13/08/2026
📢 Just days left! @pensoft.net is packing for Uppsala - join our team at the 4th BioSyst EU meeting (17-19 Aug) to explore our open-access journals and chat with our team about publishing your research with us. Details: mbmg.pensoft.net/news/1353 #BioSystEU2026
mbmg.pensoft.net
Pensoft to attend the 4th BioSyst EU meeting in Uppsala, Sweden
Between 17-19 August 2026, Pensoft will exhibit at the 4th BioSyst EU meeting, taking place in Uppsala, Sweden. The conference is organized by the Swedish Systematics Association.The three-day confere...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 12/08/2026
New study builds Hong Kong's first #mayfly #DNAbarcode library: 146 sequences, 53 BINs, 7 possible new species. Combining morphology + genetics, researchers found mayfly diversity drops sharply with urbanisation. This library will help power future eDNA biomonitoring of #freshwater habitats:
doi.org
The Hong Kong mayfly (Ephemeroptera) DNA barcode library: Integrative taxonomy enables regional species inventories and highlights the effect of urbanization on species loss
Freshwater biodiversity underpins ecosystem functioning but is rapidly declining due to urbanization and habitat modification, particularly in Southeast Asia where accurate species inventories remain ...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 10/08/2026
🧬 #iBOL2026 is heading to Bangkok, Thailand, from 2 to 6 November! ⏰ Early bird registration has been extended to 14 August, so register now to save. 🔗 Find out more by visiting our latest news announcement: mbmg.pensoft.net/news/1428
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 10/08/2026
Not all fermented drinks are made equal. #DNA sequencing of 7 manufacturers revealed one had 84% potentially harmful microbes - while others were nearly all beneficial. This new study shows why microbial monitoring needs an urgent upgrade: doi.org/10.3897/mbmg...
doi.org
High-throughput microbiome profiling of fermented grain drinks: insights across manufacturers and batches
Microbial communities underpin the safety, consistency, and functional properties of fermented foods; however, traditional culture-based methods can result in poorly characterized communities across m...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 05/08/2026
🌍 The 41st SPNHC Annual Meeting is coming to the African continent for the first time! Join natural history professionals in Cape Town, South Africa, from 7 to 11 September 2026. ➡️ Check out our latest news announcement for further details: mbmg.pensoft.net/news/1406 #SPNHC2026
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 05/08/2026
🌏 The 5th International Congress on Southeast Asian Gateway Evolution - #SAGE2026 - is now underway in Phuket, Thailand! 🔬 Bringing together global researchers to showcase the latest breakthroughs in systematics, ecology, and evolutionary biodiversity science: mbmg.pensoft.net/news/1394
subtbiol.pensoft.net
Pensoft Sponsors Student Awards at 5th International SAGE Congress in Phuket
The 5th International Congress on Southeast Asian Gateway Evolution (SAGE 2026) is currently under way in Phuket, Thailand, running from 3 to 7 August 2026 at the Phuket Royal City Hotel. Organised un...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 30/07/2026
🔔 Just a reminder - we're at #IAL10 in Trieste until the end of the week. Come find us at the @pensoft.net stand! 📚 Swing by to chat with the team and learn about publishing with us. There is still time to say hello! #IAL2026 #IAL10Trieste #IALichenology
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 28/07/2026
👋Say "Hi" to our team at Booth #204 at #ESA2026! We're at the annual meeting of the @ecologicalsociety.bsky.social through the end of the week. Stop by to chat with us about our diverse open-access, peer-reviewed scholarly portfolio - and take part in our quiz game for a chance to win some prizes!
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 27/07/2026
@pensoft.net is heading to the 4th BioSyst EU meeting in Uppsala, Sweden (17-19 Aug)! Visit the publisher's stand to chat about their open-access journal portfolio, new journal titles, and the @arphahub.com platform: mbmg.pensoft.net/news/1353 #openaccess #BioSystEU2026 #Taxonomy
mbmg.pensoft.net
Pensoft to attend the 4th BioSyst EU meeting in Uppsala, Sweden
Between 17-19 August 2026, Pensoft will exhibit at the 4th BioSyst EU meeting, taking place in Uppsala, Sweden. The conference is organized by the Swedish Systematics Association.The three-day confere...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 24/07/2026
Researchers compared two #rbcL marker lengths (263bp vs 331bp) for water quality assessment under the EU Water Framework Directive. Both gave consistent results, but the 331bp marker offered better taxonomic resolution, supporting its use for routine biomonitoring. Full details ⤵️
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Evaluation of two overlapping rbcL amplicons for routine diatom DNA biomonitoring
Marker choice is a critical methodological factor in DNA metabarcoding, as it directly influences taxonomic composition and abundance structure of communities. In diatoms, metabarcoding is increasingl...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 24/07/2026
🧬Learn to use ONTOLOGY™, a game-changing platform for #DNA barcoding & #metabarcoding, in this 3-day hands-on training co-led by @nhm-london.bsky.social and CBG. 📅 Apply by 17 Aug 2026 🔗 mbmg.pensoft.net/news/1346
mbmg.pensoft.net
DNA barcoding and metabarcoding training course using ONTOLOGY™
A new three-day training course will introduce researchers to ONTOLOGY™, a novel platform for distributed DNA barcoding and metabarcoding developed by the Centre for Biodiversity Genomics (CBG)....
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 20/07/2026
Using aphid-specific primers, researchers boosted #DNA metabarcoding's sensitivity for detecting aphid prey in ladybeetles. #Aphid DNA was detectable up to 72 hours after feeding and 100 hours after feeding stopped, showing gut-content prey can linger and skew biosurveillance data. Learn more 👇
doi.org
A feast of aphids: assessing the detectability of prey aphid DNA inside ladybeetle predators using taxon-specific metabarcoding
Understanding insect predator–prey interactions is critical for crop protection, particularly within biological control and integrated pest management frameworks. Ladybeetles (Coleoptera, Coccinellida...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 02/07/2026
📍 Salt Lake City, here we come! @pensoft.net will be at the 111th @ecologicalsociety.bsky.social Annual Meeting between 26-31 July, at the Salt Palace Convention Center. Stop by our booth to explore our journal portfolio and publishing solutions like the @arphahub.com! #ESA2026
mbmg.pensoft.net
Pensoft to attend ESA 2026 in Salt Lake City, USA
From 26-31 July, Pensoft will be at the 111th Ecological Society of America Annual Meeting in Salt Lake City, Utah, USA, held at the Salt Palace Convention Center.This year's theme,&nbsp...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 02/07/2026
✈️Just a few days until we touch down in Leiden, Netherlands for the European Congress of Conservation Biology #ECCB2026, running July 6-10! 🧬 Swing by @pensoft.net's booth #10 to chat with us about all things publishing with us - we'd love to meet you. Learn more: mbmg.pensoft.net/news/1263
mbmg.pensoft.net
Pensoft Publishers at the 8th European Congress of Conservation Biology
Pensoft Publishers will be exhibiting at the 8th European Congress of Conservation Biology (ECCB 2026), which will take place from 6-10th July in the scenic city of Leiden, Ne...
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Pensoft @pensoft.net · 25/06/2026
🧬A landmark agreement between @ergabiodiv.bsky.social , @iboleurope.bsky.social & @eurotaxonomy.cetaf.org marks a new era for European biodiversity #genomics. The @biogeneurope.bsky.social plus (BGE+) project will build a continent-wide system of shared #data, tools & expertise. Learn more 👇 1/2
blog.pensoft.net
Using DNA to save Nature: Europe’s Next Biodiversity Frontier | Blog
A landmark alliance of DNA experts across Europe signals the start of an unprecedented effort to build a continent-wide system that applies genomics for protecting European biodiversity.
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 26/06/2026
Look who we met at #IAVS2026 - Prof. Frances Siebert from NWU - North-West University, co-author of an article that explores how the dual-locus #metabarcoding approach can help us better understand the diets of #herbivores, particularly in drought-affected areas. See more: doi.org/10.3897/nhcm...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 22/06/2026
📍 The 68th International Association for Vegetation Science (IAVS) Symposium has officially started in Gijon, Spain! 🙌 Come and visit @pensoft.net's stand to see our journal featured and stay tuned for further updates! #Gijón2026 #IAVS2026
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 19/06/2026
🧬 Metabarcoding and Metagenomics keeps climbing: #Scopus CiteScore up to 5.4, holding prestigious Q1 across 5 categories. Impact Factor also up, to 3.5 and ranks Q2 in Ecology (Web of Science). See more: mbmg.pensoft.net/news/1294 #openaccess #scholarlypublishing #publishing #DNA
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 18/06/2026
#DNA #metabarcoding is reshaping how we monitor #aquatic #ecosystems proving to be faster, cheaper, and more scalable than traditional microscopy-based diatom ID. This new review of 128 studies breaks down the full workflow (sampling → sequencing → #bioinformatics) and you can find out more here:
doi.org
DNA metabarcoding of diatoms: A next-generation tool for aquatic biodiversity and bioassessment
DNA metabarcoding of diatoms is a next-generation biomonitoring tool, utilizing high-throughput sequencing technology for the identification and assessment of diatom biodiversity in aquatic ecosystems...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 17/06/2026
Using nanopore sequencing on just 1L of river water, researchers paved the way for cheaper and more practical long-fragment #eDNA analysis, mapping population #genetics of a freshwater fish across Hokkaido, Japan with ~$30/sample and 2.5hr prep Find out more: doi.org/10.3897/mbmg...
doi.org
A practical and cost-effective approach to long-fragment eDNA sequencing for high-resolution genetic diversity assessment
Environmental DNA (eDNA) analysis is increasingly recognised as a valuable method for assessing genetic diversity. However, its resolution and applicability are limited by the short length of sequence...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 17/06/2026
🧬 #eDNA #metabarcoding is transforming conservation - but pitfalls in primer selection, #bioinformatics & incomplete databases risk misidentification. Check out the latest review outlining best practices for accurate species ID & clearer communication with stakeholders: doi.org/10.3897/mbmg...
doi.org
Guidance and best practices for species identification using eDNA metabarcoding – When do you call a cod a cod?
With the rapid uptake of environmental DNA (eDNA) metabarcoding for a wide range of conservation and management uses, there is a growing need for guidance and best practices for species identification...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 16/06/2026
A new study comparing two #eDNA methods for detecting fish found they work best in combination and that a low-cost filter made from everyday materials often outperformed conventional lab equipment in terms of species detection: doi.org/10.3897/mbmg... @ucddublin.bsky.social #FishMonitoring
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Nature Conservation @natureconservation.pensoft.net · 16/06/2026
🐸 Researchers bought 4 frogs online labeled as a common farmed species. A quick #DNA test told a different story - they were actually Quasipaa spinosa, a protected species under Chinese law. This mislabeling and misidentification might present a loophole that threatens #biodiversity. #amphibians
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Hidden or inadvertent illegal amphibian trade? Genetic analyses reveal Quasipaa spinosa misidentified as Hoplobatrachus chinensis in the trade
Amphibian misidentification within the commercial wildlife trade represents a growing challenge for biodiversity conservation and wildlife regulation. Morphologically similar species are frequently tr...
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Pensoft @pensoft.net · 15/06/2026
🎉 Thrilled to be in Davos, Switzerland for #WBF2026. 🤝 Under the theme "Leading Transformation Together", we are showcasing our open-access journal portfolio and participating projects, including @bioagora.eu, @obsgession.eu and @b-cubed.eu. 💬 Come chat with our team!
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 11/06/2026
🌎 The Swiss National Park HQ in Zernez has welcomed OBSGESSION’s consortium for its Annual Meeting! 🙌 We are delighted that materials from our journal have been featured at the stand. ➡️ Find out more about the OBSGESSION project here: obsgession.eu @obsgession.eu
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