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Diane Adjavon

@adjavon.bsky.social
93 followers 85 following 10 posts

Machine Learning Researcher 🖥🔬🧫 🦆 @ Funke Lab, #HHMIJanelia Views my own.

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Reposted by Diane Adjavon
Janelia Research Campus @hhmijanelia.bsky.social · 09/05/2025
🖱️ Picking out individual cells in distorted microscopy images is now as easy as clicking a button, thanks to Cellpose3: www.janelia.org/news/newest-...
janelia.org
Newest version of Cellpose can spot cell boundaries even in cloudy conditions
Picking out individual cells in distorted microscopy images is now as easy as clicking a button. A new version of Cellpose – the popular tool that maps the boundaries of diverse cells in microscopy
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Reposted by Diane Adjavon
Assaf Zaritsky @assafzaritsky.bsky.social · 09/05/2025
Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data. doi.org/10.1101/2025... 🧵 1/n
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Reposted by Diane Adjavon
HMS Image Analysis Collaboratory @hms-iac.bsky.social · 07/05/2025
We are proudly hosting 𝐃𝐫. 𝐓𝐚𝐥𝐥𝐞𝐲 𝐋𝐚𝐦𝐛𝐞𝐫𝐭 @talley.codes (CITE, Harvard Medical School): 𝐒𝐢𝐦𝐮𝐥𝐚𝐭𝐢𝐧𝐠 𝐫𝐞𝐚𝐥𝐢𝐬𝐭𝐢𝐜 𝐥𝐢𝐠𝐡𝐭 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲 𝐢𝐦𝐚𝐠𝐞𝐬 𝐮𝐬𝐢𝐧𝐠 𝐦𝐢𝐜𝐫𝐨𝐬𝐢𝐦 When: 𝐌𝐚𝐲 𝟐𝟗𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (Boston time) Join us on Zoom! harvard.zoom.us/j/9762343464...
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Reposted by Diane Adjavon
Marius Pachitariu @marius10p.bsky.social · 03/05/2025
🚀🔬🦠 Releasing 🤖Cellpose-SAM🤖, a cellular segmentation algorithm with superhuman generalization 🦸‍♀️. Try it now on 🤗 huggingface.co/spaces/mouse... paper: www.biorxiv.org/content/10.1... w/ @computingnature.bsky.social 1/n
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Reposted by Diane Adjavon
Janelia Research Campus @hhmijanelia.bsky.social · 25/04/2025
🥳 Happy #DNADay! 🧬 What better way to celebrate than with cycleHCR: one of our newest tools, developed by the Liu Lab, that uses a novel DNA barcode system to track hundreds of RNA & protein molecules in single cells within thick biological samples ➡️ www.janelia.org/news/new-met...
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Reposted by Diane Adjavon
Ling-Qi Zhang @lingqiz.bsky.social · 24/04/2025
Very happy to see our work finally in print! www.pnas.org/doi/10.1073/... TLDR: Tilt illusion is not a bug, but a feature of a well-designed visual system that maximizes information capacity adaptively based on spatial context. (1/6)
pnas.org
The tilt illusion arises from an efficient reallocation of neural coding resources at the contextual boundary | PNAS
The tilt illusion—a bias in the perceived orientation of a center stimulus induced by an oriented surround—illustrates how context shapes visual pe...
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Reposted by Diane Adjavon
Jan Funke @janfunkey.bsky.social · 18/04/2025
How can AI help you to analyze your microscopy images? Find out at the "Machine Learning for Microscopy Image Analysis" course at the @mblscience.bsky.social in Woods Hole from Aug 22-Sep 6! Applications are due 🚨 April 30 🚨 Read on for more! 👇 www.mbl.edu/education/ad...
mbl.edu
AI@MBL: Machine Learning for Microscopy Image Analysis | Marine Biological Laboratory
The goal of this course is to familiarize researchers in the life sciences with state-of-the-art deep learning techniques for microscopy image analysis and to introduce them to tools and frameworks th...
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Reposted by Diane Adjavon
HHMI @hhmi-science.bsky.social · 25/03/2025
Igor Siwanowicz of @hhmijanelia.bsky.social captured these photos of pollen grains on the sigma of a morning glory flower. This is part of the early stage in creating a seed, it might also be the reason why you can’t stop sneezing!
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Diane Adjavon @adjavon.bsky.social · 31/03/2025
I was wrong before, *this* was actually tailor-made for me.
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Reposted by Diane Adjavon
Michael Reiser @michaelreiser.bsky.social · 27/03/2025
Yes, the paper is cool... BUT if you’re a fan of fly vision and neuroanatomy, the Supplemental Materials are the real treat 🎉 We made a catalog of all the cells and it's ✨beautiful✨ 🧭 Interactive explorer: reiserlab.github.io/male-drosoph...
reiserlab.github.io
Start Page .:. Cell Type Explorer .:. Connectome-driven neural inventory of a complete visual system
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Reposted by Diane Adjavon
Michael Reiser @michaelreiser.bsky.social · 27/03/2025
I know there's a 𝒍𝒐𝒕 going on right now, but I couldn’t be prouder to share this long-incubated labor of love: the complete connectome of the male 𝐷𝑟𝑜𝑠𝑜𝑝ℎ𝑖𝑙𝑎 optic lobe 🧠🪰 🔗 www.nature.com/articles/s41...
nature.com
Connectome-driven neural inventory of a complete visual system - Nature
A connectome of the right optic lobe from a male fruitfly is presented together with an extensive collection of genetic drivers matched to a comprehensive neuron-type catalogue.
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Reposted by Diane Adjavon
Marshal Hedin @mhedin.bsky.social · 22/03/2025
in the crowd ... an ant cricket (possibly a desert ant cricket, Myrmecophilus manni) cruises amongst 100s of ants beneath a flipped stone oak woodland near Warner Springs CA
tiny light orange ant cricket amongst many small black ants, as found beneath a flipped stone
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Diane Adjavon @adjavon.bsky.social · 25/03/2025
the thomas sanders x dropout combo feels tailor made for me
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Reposted by Diane Adjavon
Janelia Research Campus @hhmijanelia.bsky.social · 03/03/2025
Join Janelia Senior Group Leader & Head of Computation & Theory Stephan Saalfeld @herrsaalfeld.bsky.social this Thursday at #ScienceOnTap at Old Ox Brewery, hosted by @loudounlibrary.bsky.social 🤖 Learn how #AI aids in understanding the complexity of biological systems & their interactions.
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Reposted by Diane Adjavon
Simon Clark @simonoxfphys.com · 01/03/2025
It can feel like we have made no progress in the fight against climate change. That's not the case. youtu.be/h1jOqyjcO4g?...
youtu.be
How much progress have we made on climate change?
YouTube video by Simon Clark
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Reposted by Diane Adjavon
Kristin Branson @kristinmbranson.bsky.social · 14/02/2025
We read "Large Concept Models" in our reading group. It models language at the sentence resolution - "concepts". We had lots of thoughts about it! You can read them in our new Janelia CVML blog post: janelia-cvml.github.io/blog/posts/L... #ML #AI #Janelia @adjavon.bsky.social @bogovicj.bsky.social
janelia-cvml.github.io
Large Concept Models: Language Modeling in a Sentence Representation Space – Janelia CVML
Summary of and thoughts on Meta’s recent paper
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Reposted by Diane Adjavon
Florian Jug @florianjug.bsky.social · 11/02/2025
The preprint is now available! Check it out... and... if you want to repost, why not 👇the post down here👇, so others get the bioRxiv link right away? Oh, and... 𝐭𝐡𝐚𝐧𝐤𝐬! 🙏 doi.org/10.1101/2025... bsky.app/profile/flor...
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Reposted by Diane Adjavon
Florian Jug @florianjug.bsky.social · 08/02/2025
Immagine you could image two cellular structures in the same fluorescent channel and still reliably get them separated afterwards… What would you do with this? Now… what would you do if that also worked with 4 structures at once? 👇 #MicroSplit #preview🧵
Schematic overview on how MicroSpit operates. It can split superimposed structures in fluorescent image channels by using a suitably trained AI.Concrete example for how MicroSplit unmixes four superimposed structures.
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Reposted by Diane Adjavon
Janelia Research Campus @hhmijanelia.bsky.social · 05/02/2025
📢 Submissions are now open for the CellMap Segmentation Challenge. Build the best method for segmenting cellular organelles in vEM using our 289 annotated volumes, 40 organelle classes, and 22 diverse cell and tissue types. 🔗 hhmi.news/410evJQ
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Reposted by Diane Adjavon
Virginie Uhlmann @virginieuhlmann.bsky.social · 28/01/2025
Different year, different conference, same vibe.
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Diane Adjavon @adjavon.bsky.social · 15/01/2025
Can you spot the difference between the cells on the left and right? Read on for the solution (and a preprint announcement)… 👇 1/6
An illustration of two plates of cells, with a slight difference in the size of one of the organelles.
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Reposted by Diane Adjavon
Oisin Mac Aodha @oisinmacaodha.bsky.social · 09/01/2025
📢📢📢 The 12th iteration of the workshop on Fine-Grained Visual Categorization will be taking place at #CVPR2025 this year: sites.google.com/view/fgvc12/... There is a separate call for 4 page non-archival and 8 page official CVPR proceedings papers.
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Reposted by Diane Adjavon
Julien Renoult @julien-renoult.bsky.social · 08/01/2025
PLEASE SHARE: Postdoc Opportunity in Montpellier France. 18 months starting May 2025: Generative AI for Studying the Influence of Habitats on the Diversification of Bird Color Patterns. Applications and information here: tinyurl.com/2368teak @evoldir.bsky.social
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Reposted by Diane Adjavon
Janelia Research Campus @hhmijanelia.bsky.social · 17/12/2024
We're at #CellBio2024! Come visit us in the exhibit hall to learn more about Beautiful Biology, AI@HHMI, our joint graduate programs with Johns Hopkins, our Theory Fellow program, a fun CellMap challenge, and many open positions across all of @hhmi.bsky.social.
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