iiinova — where your digital self keeps evolving

Assaf Zaritsky @assafzaritsky.bsky.social · 26/08/2026

Excited to share our new @bioRxiv preprint! Mask Interpreter brings trustworthy AI to in silico labeling by uncovering "explanation signatures" to verify biological fidelity & filter artifacts at single-cell resolution ✨ doi.org/10.64898/202...

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Assaf Zaritsky @assafzaritsky.bsky.social · 03/04/2026

Join us at the first @cshlnews.bsky.social (CSHL) meeting on Cell Modeling in Space and Time, taking place June 22-25, 2026 💫 Abstract deadline is April 10th, meetings.cshl.edu/meetings.asp... Read the @focalplane.bsky.social post focalplane.biologists.com/2026/04/03/c...

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Cell Modeling in Space and Time at CSHL - FocalPlane

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Assaf Zaritsky @assafzaritsky.bsky.social · 20/03/2026

@erinweisbart.bsky.social & @bethcimini.bsky.social discuss our recent paper on anomaly-based representations for image-based phenotypic profiling. They explain how we encode morphological inter-feature dependencies while maintaining biological interpretability 🔥 📄 Paper: doi.org/10.1016/j.ce...

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Assaf Zaritsky @assafzaritsky.bsky.social · 19/12/2025

🚨 New @biorxivpreprint! 🧬💻 Can the spatial architecture of chromatin predict chemoresponse? We integrated FLIM imaging + ML to show that spatially organized "open" chromatin states in pre-treatment biopsies predict resistance in TNBC. www.biorxiv.org/content/10.6... 🧵 1/3

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allen institute @alleninstitute.org · 11/12/2025

TOMORROW is the deadline to apply for the #LakeConference on Modeling Life from Cells to Tissues! 📆 April 20-22, 2026 📍 Seattle, USA 🧠 All career stages welcomed. Learn more and apply: alleninstitute.org/events/aics-lake… #StemCell #DevBio

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Assaf Zaritsky @assafzaritsky.bsky.social · 08/12/2025

Join us TODAY (4 pm, Room118) for the "Future of Cell Biology" session at #CellBio2025! Hosted by the @ascbiology.bsky.social's journal Molecular Biology of the Cell (MBoC) Hope to see you there ☺️

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Assaf Zaritsky @assafzaritsky.bsky.social · 30/10/2025

Our paper is out ✨ doi.org/10.1016/j.ce... We propose a self-supervised anomaly representation that encodes morphological inter-feature dependencies for high-content image-based cell phenotyping! 1/3

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Assaf Zaritsky @assafzaritsky.bsky.social · 10/10/2025

Excited to announce the first @cshlnews.bsky.social meeting on Cell Modeling in Space and Time, June 2026 💫 meetings.cshl.edu/meetings.asp... Bringing together experiments, computation and theory to explore dynamic, multi-scale cellular organization and function! 1/3

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Rita Strack @ritastrack.bsky.social · 24/09/2025

Nature Biomedical Engineering is hiring again! This time we're hoping to add an editor with machine learning expertise to the team (although we are open to those with other relevant expertise!) Deadline is Oct 20. Please RT! springernature.wd3.myworkdayjobs.com/SpringerNatu...

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Janelia Research Campus @hhmijanelia.bsky.social · 26/08/2025

📢We're #hiring Group Leaders! Apply to lead a lab at Janelia & advance biology using theory, computational modeling & machine learning. 🔹5-year renewable appointment 🔹Pioneer new tools & approaches 🔹Collaborate across disciplines Apply by Nov. 4👉 janelia.link/groupleader

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Nicoletta Petridou @nicolettapetridou.bsky.social · 08/08/2025

We are searching for an enthusiastic scientist to join our team and establish annual killifish as a model system for early developmental biology and biophysics! @embl.org @embldbunit.bsky.social Apply here: embl.wd103.myworkdayjobs.com/EMBL/job/Hei... Please re-post 🙏

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Assaf Zaritsky @assafzaritsky.bsky.social · 09/05/2025

Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data. doi.org/10.1101/2025... 🧵 1/n

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allen institute @alleninstitute.org · 01/05/2025

Unveiling crucial insights into nuclear growth in hiPSC colonies. By analyzing 3D timelapse data, our Cell Science team has shown how cell lineage & environment shape cellular behavior. This timelapse illuminates the height of nuclei from 4μm (turquoise) to 11μm (fuchsia). 🔗👇

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Dave Barry @david-j-barry.bsky.social · 17/04/2025

"This symposium explores the power of microscopy imaging as a data-rich resource for quantifying cellular phenotypes, with a strong focus on high-content imaging techniques such as Cell Painting and their applications in drug discovery and basic cell biology" cytodata25.eu-openscreen.eu

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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 03/04/2025

You want to use LLMs for your research, but don't know what they can be used for? And whether their use is compatible with good scientific practice? Then this introduction by @haesleinhuepf.bsky.social might be the right thing for you. Find the slides here: zenodo.org/records/1441...

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Paul Villoutreix @paulvilloutreix.bsky.social · 25/03/2025

Very happy to share our new preprint "MODIS: Multi-Omics Data Integration for Small and Unpaired Datasets"! We proposed a new coupled variational auto-encoder architecture to solve the problem of data integration for small and unpaired datasets (diagonal integration) arxiv.org/abs/2503.18856

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