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Anya Auerbach

@aauerbach.bsky.social
886 followers 564 following 282 posts

Visiting prof at Oberlin College | PhD from UMN EEB studying Madagascar’s bird radiations | Loves birds, diversification, biodiversity, teaching evolution, and (natural) history museums | Queer. Organizer. Still a NYer at heart.

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Reposted by Anya Auerbach
Josef Uyeda @pseudacris.bsky.social · 29/09/2026
New preprint led by grad student Caleb Charpentier that I'm very excited about! This is a hefty review & perspective on how we can close the gap in trust between new "Deep comparative methods", and the biological meaning & inferences that systematists want. ecoevorxiv.org/repository/v...
ecoevorxiv.org
On the Promise (and Practice) of Deep Comparative Methods: Expressivity, Limitations, and Design
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Nathan Kalman-Lamb @nkalamb.bsky.social · 28/09/2026
This (superb) reporting reveals ASU has basically attempted a full cover-up and the only reason they aren’t going to get away with it is the genuine courage and solidarity of his teammates. Very rare in college sport.
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Carl T. Bergstrom @carlbergstrom.com · 29/09/2026
"I believe that science derives its authority from something more than mastering the pipeline from data generation to publication. Rather, it comes from interactions within a community of people trained to interrogate evidence and answer for the conclusions they draw from it."
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Cellular Tracking Technologies @celltracktech.bsky.social · 28/09/2026
A Northern Waterthrush tagged in Cape May, NJ left after sunset on Sep 11. Two weeks later it was over Colombia! Jamaica -> Colombia included ~800 km of open Caribbean. 3,082 km so far! @birdscanada.bsky.social @originalstu.bsky.social #MotusWTS #BirdMigration #ornithology @nature.org
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Joseph W. Brown @josephwb.bsky.social · 26/09/2026
Early-diverging lineages provide little information about ancestors academic.oup.com/sysbio/advan... From @phylieu.bsky.social @sinkingdiatom.bsky.social @omearabrian.bsky.social
academic.oup.com
Early-diverging lineages provide little information about ancestors
Abstract. Large phylogenetic trees are often unbalanced near the root, with a species-depauperate lineage sister to a far more species-rich clade. The spec
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Anya Auerbach @aauerbach.bsky.social · 27/09/2026
Thanks to my enterprising first years I learned today about some depths of junk journal hell I had never previously witnessed. They mostly did well on their outlines and annotated bibliographies and this should make for a great learning opportunity! But wooow is it bad out there.
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April Wright @wrightam.bsky.social · 26/09/2026
Something else I think we need to think about is what this short-sightedness means for our fundamental stem resources. A narrow focus on ROI impacts basic science facilities, which take a long time to build and not much time to destroy www.newsobserver.com/opinion/arti...
newsobserver.com
UNC just inherited a great collection. Will it build a great program? | Opinion
Duke University and UNC-Chapel Hill merged their plant collections to create the third-largest university herbarium in the country. | Opinion
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Ben Sheldon @sheldonbirds.bsky.social · 25/09/2026
I remember seeing Margaret Attwood at the IOC in Vancouver in 2018 - the closest thing to Canadian royalty?! Excellent to see a chair in Ornithology being endowed - see quoted tweet for direct details & more background in this @theguardian.com article www.theguardian.com/books/ng-int...
theguardian.com
‘Birdwatching is close to rapture’: Margaret Atwood on why she has given C$1m to avian research
Award-winning novelist celebrates late partner’s love of birds with gift to establish the Graeme Gibson chair in avian biology
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Sara Lipshutz (she/her) @jacanamama.bsky.social · 24/09/2026
Super excited to share this study by @gamaevo.bsky.social in collaboration with Steve Nowicki and Susan Peters!! Response to geographic song variation predicts differential gene expression in the blood of a songbird: iScience www.cell.com/iscience/ful...
cell.com
Response to geographic song variation predicts differential gene expression in the blood of a songbird
Behavioral neuroscience; Ecology; Transcriptomics
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Guillermo Navalón @gnavalon.bsky.social · 23/09/2026
Quite an updated and deep outlook on the main problems (and potential solutions!) in avian phylogenetics, past and present, stem and crown! Also very well written & nice to read, congrats you both (J. Benito is not in bluesky yet)!
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Artologica aka Michele Banks @artologica.net · 23/09/2026
There it is 😡
Nature, which previously reported on NSF’s grants shortfall, said it can “be attributed mainly” to the agency keeping more than $1 billion in an account, much of which is for the White House’s Grand Research Challenges project, which is meant to support specific fields, including artificial intelligence. The project was mentioned in one line in a Sept. 10 NSF memo: “In the coming weeks and months, NSF will announce a series of Grand Research Challenges to take thesis-driven bets that stand to unlock new frontiers of S&T [science and technology].”
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Milton Tan @mtanichthys.bsky.social · 15/09/2026
Newly accepted work I contributed to: Challenges for reproducibility in species delimitation academic.oup.com/sysbio/advan...
academic.oup.com
Challenges for reproducibility in species delimitation
Abstract. Species richness is a foundational metric for comparing biodiversity among clades and regions in ecology, evolution, and conservation. As the bio
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Dr. K. Lotterhos @drk-lo.bsky.social · 15/09/2026
I'm hiring a bioinformatician! Review of applications starts October 1 with a start date as soon as possible. 🧪 #Genomics #popGen #CompBio northeastern.wd1.myworkdayjobs.com/careers/job/...
northeastern.wd1.myworkdayjobs.com
Bioinformatician - Lotterhos Lab
About the Opportunity About the Center for Marine Ecological Genomics The successful candidate will be based at the Lotterhos Lab and the Center for Marine Ecological Genomics at Northeastern Marine S...
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Kory Evans Ph.D @sternarchella.bsky.social · 11/09/2026
Really excited to share our latest paper with you! We examine patterns of skull shape evolution in an awesome group of fishes and show that they rapidly innovated following the mass extinction event that wiped out the dinosaurs. urldefense.com/v3/__https:/...
urldefense.com
Selection, constraints, and contingency drive mosaic patterns of evolution during the carangarian adaptive radiation
Adaptive radiations generate remarkable morphological diversity, yet traits often diversify at different rates and modes, producing mosaic patterns of evolution. Modularity, the semiautonomous organization of traits, can shape how selection and ...
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Hengxing Zou @hengxingzou.bsky.social · 27/08/2026
You might have seen the paper @science.org last week on the solar panels decreasing bird biodiversity. Our reanalysis, led by the talented Yangkang Chen, found fundamental, retraction-worthy flaws in their results, especially from the citizen science data and their models… (1/6)
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Isabel @isabelott.bsky.social · 11/09/2026
“The issues [we face] now are similar to issues that other scientific and creative professions are facing, and indicate issues that all of humanity might face: how to make sure that, as AI changes the way work is done, we do not lose sight of what that work was meant to achieve in the first place.”
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Emily M. Bender @emilymbender.bsky.social · 07/09/2026
Also worth re-upping: Mathematicians standing up against how their field is being used as marketing for OpenAI and the like: leidendeclaration.ai >>
leidendeclaration.ai
Leiden Declaration on Artificial Intelligence and Mathematics
This declaration calls for action to address the challenges posed by the use of artificial intelligence within mathematics research.
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Dan MacGuigan @dmacguig.bsky.social · 08/09/2026
New paper in Systematic Biology! We show how micro-synteny can help resolve a tricky fish #phylogenetic problem where traditional sequence-based analyses fall short. Genomes archive evolutionary history in more than just their basepairs. doi.org/10.1093/sysb... #fish #genomics #evolution
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Pranav Gokhale @pranav-gokhale.bsky.social · 09/09/2026
Hi ecologists! I’m looking for papers on the outcome of nest predation in birds When a predator attacks a nest, how often does this result in complete loss of the clutch/brood versus partial predation, where some eggs or nestlings survive? complete vs. partial #Ornithology #Ecology #Predation
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Cristian Román-Palacios @cromanpa.bsky.social · 09/09/2026
When two clades evolve together, can the trees alone tell you how often they cospeciated, and how often the symbiont switched hosts? We think so! Our paper, led by @yichaozeng.bsky.social, shows that branch length differences in the cophylogeny are informative enough to estimate six rates at once
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Dr. Davey F. Wright ⛏️🦕🧬 @daveyfwright.bsky.social · 02/09/2026
Deep breath. Screams from the top of my lungs: "Producing species-dense sampling at biodiversity scale requires the material and expertise already held in natural history collections" 🧪
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Anya Auerbach @aauerbach.bsky.social · 01/09/2026
Hey paleo friends, looking for paper recs (for my macroevolution senior seminar)! Topic is currently labeled as “deep time, fossils, taphonomy”. I’d ideally like a research paper that will expose my students to some “typical” paleobio research, but include discussion of biases in the fossil record.
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Ina Satokangas @inasatok.bsky.social · 01/09/2026
A cool bunch of new speciation papers out recently in Molecular Ecology, looking at divergence, hybridisation, recombination, genome architecture, and so on! Genomics of Speciation special issue: onlinelibrary.wiley.com/doi/toc/10.1... #speciation #divergence #hybridisation #recombination #genomics
onlinelibrary.wiley.com
Special Issue: Genomics of Speciation: Molecular Ecology
Molecular Ecology is an international journal for research using molecular genetic techniques to address questions in ecology, evolution, behavior and conservation.
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Anya Auerbach @aauerbach.bsky.social · 01/09/2026
Hey paleo friends, looking for paper recs (for my macroevolution senior seminar)! Topic is currently labeled as “deep time, fossils, taphonomy”. I’d ideally like a research paper that will expose my students to some “typical” paleobio research, but include discussion of biases in the fossil record.
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Laura Lagomarsino, PhD @tropicalbotany.bsky.social · 01/09/2026
Look, y'all— this is not the worst outcome, but it's also not great. Framing this as gaining a notably large herbarium is spin; the reality is a historic, important herbarium has lost its identity. The specimens were never going to be trashed; Duke still voluntarily truncated their botanical legacy.
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Anya Auerbach @aauerbach.bsky.social · 31/08/2026
Defending in July and starting a visiting professor job in August does not leave a lot of time for putting together job applications due in early September :/ Not that this is anyone’s fault but my own of course, it just sucks! (Venting over thank you)
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Casey Dunn @caseywdunn.bsky.social · 25/08/2026
My new book, Phylogenetic Biology, is now published. Available online for free at dunnlab.org/phylogenetic... . Physical copies can be purchased at shop.lightningsource.com/b/085?params... or your favorite bookstore.
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MEPGT @mepgt.bsky.social · 30/08/2026
Very important paper by @phylogenetrips.bsky.social "Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale" | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale | PNAS
Adaptation in protein-coding sequences can be detected from multiple sequence alignments across species or alternatively by leveraging polymorphism...
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 26/08/2026
Why make the page, I asked @ce7an.bsky.social. Nobody will read it, I said. And here we are, with Cheeto being the most widely read page in the UC Davis High Performance Computing website. hpc.ucdavis.edu/people/cheet...
hpc.ucdavis.edu
Dr. Cheeto Cat
Cheeto joined HPC@UCD as a stray scholar-in-residence and has since established himself as a permanent fixture of academic life. Although lacking a formal degree, he has consistently demonstrated exce...
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Carl Zimmer @carlzimmer.com · 26/08/2026
Nature honors Dolly Parton's scientific legacy. www.nature.com/articles/d41...
nature.com
Dolly Parton dies aged 80 – researchers celebrate her contributions to science
The country singer was an advocate for vaccines, public health, literacy and marginalized communities.
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elia ayoub @ayoub.bsky.social · 19/08/2026
The IDF does this all the time. They lie until they can't, then they say they'll do an investigation, then the investigation leads nowhere. It took 2.5 years for them to even admit they opened fire on the car, something we all knew happened hours after they did.
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Rob Denton @rddenton.bsky.social · 19/08/2026
[JOB!] I'm hiring for a really exciting postdoc position. A combination of breeding experiments, conservation genomics, and student mentorship. Room/board at the @amnh.org Southwestern Research Station each summer, 40 months of support, new science building at BSU. Share broadly! ad: bit.ly/4hKaUIL
A human hand holds a medium sized green frog with distinct gray spots and yellow eyes. This is a Chiricahua Leopard Frog, a threatened species native to the southwest US and Mexico.
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David Tan @mangrovepitta.bsky.social · 19/08/2026
My 2nd PhD chapter on the phylogeography of the Mangrove and Blue-winged Pittas is now on BioRxiv! Here we used genomic and palaeogeographic methods to show that, despite their similarities, the 2 species are strongly diverged, potentially due to differing ecologies. www.biorxiv.org/content/10.6...
Blue-winged PittaMangrove Pitta
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Carl T. Bergstrom @carlbergstrom.com · 17/08/2026
1. Recently I’ve received lots of emails from people I don’t know personally, asking for my feedback on their books or papers. They explain the connection between my work and theirs and ask me to take a look. The catch, of course, is that the emails are transparently, obviously, written by AI.
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Evolution Letters @evolletters.bsky.social · 10/08/2026
Big evolutionary events can fool phylogenetic analyses. A new approach combines phylogenetic regression with eigenvectors to reduce false positives and better account for the history written in genomes. doi.org/10.1093/evle...
doi.org
Characterizing and mitigating confounding by unreplicated evolutionary events in phylogenetic regression
Abstract. When researchers want to test for a direct effect of one attribute on another using interspecific data, they need to account for the confounding
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Mark Westneat 🐟 @mwestneat.bsky.social · 16/08/2026
Surgeonfishes are cool! Our Evolution paper now out in final form, the amazing patterns of change in fish shape and covariance (new method!) elegantly revealed by @linnealungstrom.bsky.social 🐟🐠🦑🌿 academic.oup.com/evolut/artic...
academic.oup.com
Phylogenetics, trait covariance analysis, and the evolution of fin and body shape in the surgeonfishes
Abstract. Insights into ecomorphology are enriched when investigating evolutionary correlations between ecologically and functionally important traits. How
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Aramati Casper @aramaticasper.bsky.social · 13/08/2026
Why is there "no consensus" about sex in biology? Turns out, we're using seven different concepts. In "Evolution, development and the incoherence of sex" we name & elucidate these concepts. With Karen Warkentin and Jay Falk @jjinsing.bsky.social @sicbjournals.bsky.social doi.org/10.1093/icb/...
The cover of the article, in Integrative and Comparative Biology. The image caption is "Examples of seven biological phenomena sometimes called sex and the evolutionary relationships among them. The seven sex concepts are depicted with images: 0) horizontal gene transfer, 1) meiosis and syngamy, 2) anisogamy, 3) the gametes produced by an individual, 4) traits often associated with gamete production, 5) processes that bring gametes in proximity to facilitate syngamy, 6) processes/behaviors/traits derived from sex5.
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Anya Auerbach @aauerbach.bsky.social · 06/08/2026
This semester I'm designing a freshman seminar I've titled "Evolution and Society". Post-defense I'm now working on course planning details, & have both too many ideas & worry what I'm neglecting.. What would you consider an essential topic(s) or reading(s) for a class like this? Please do share!
Image of the course description, which reads: Our society has been shaped by evolutionary ideas. Learning about evolution has led people to question human nature, our place in the natural world, and what that means for us as individuals and a society. Through reading, discussion, and museum visits, this class will explore how evolutionary study has filled us with wonder and a sense of kindship with all living things, been used to justify some of humanity’s greatest atrocities, and continues to be misused and misunderstood today. With grounding in the logic of evolutionary theory, we will ask how understanding evolution does – or doesn’t – help us understand ourselves. Field trip(s) required.
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Anya Auerbach @aauerbach.bsky.social · 06/08/2026
This semester I'm designing a freshman seminar I've titled "Evolution and Society". Post-defense I'm now working on course planning details, & have both too many ideas & worry what I'm neglecting.. What would you consider an essential topic(s) or reading(s) for a class like this? Please do share!
Image of the course description, which reads: Our society has been shaped by evolutionary ideas. Learning about evolution has led people to question human nature, our place in the natural world, and what that means for us as individuals and a society. Through reading, discussion, and museum visits, this class will explore how evolutionary study has filled us with wonder and a sense of kindship with all living things, been used to justify some of humanity’s greatest atrocities, and continues to be misused and misunderstood today. With grounding in the logic of evolutionary theory, we will ask how understanding evolution does – or doesn’t – help us understand ourselves. Field trip(s) required.
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Martin Bulla @martinbulla.bsky.social · 06/08/2026
Why have birds evolved complex songs? Across 4,940 passerine species, #BirdSong complexity peaks in temperate regions and is structured by evolutionary history and ecology, but shows weak associations with proxies of sexual selection and cognitive signalling. www.biorxiv.org/content/10.6...
Global distribution of passerine song complexity showing highest values in temperate regions, with accompanying phylogenetic patterns across major lineages.
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Benjamin Freeman @benjaminfreeman.bsky.social · 04/08/2026
good scientific writing alert "In the Hawaiian honeycreepers, the progression “rule” is more of a polite suggestion" from nice new paper on Hawaiian honeycreeper phylogeny www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Priscilla Lau @prilau.bsky.social · 30/07/2026
Our paper (also, my first first-author paper) is now available in MEE early view! In this study, we introduced a state-dependent Ornstein-Uhlenbeck model we implemented in RevBayes to test adaptive hypotheses in macroevolution. (1/3) besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
An efficient Bayesian phylogenetic approach for joint inference of continuous and discrete trait evolution under a state‐dependent Ornstein–Uhlenbeck model
Macroevolutionary adaptation of a continuous trait to different discrete states across species can be modelled using a phylogenetic state-dependent Ornstein–Uhlenbeck (OU) process. Existing infere...
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Princeton Vaughn @princetonvaughn.bsky.social · 28/07/2026
Thrilled to have my first thesis chapter published in @currentbiology.bsky.social! We combine genomics, gene editing, and performance experiments to reveal the genetic basis and functional consequences of hurricane-induced trait shifts in island lizards! Check it out: www.cell.com/current-biol...
cell.com
Genomic targets of hurricane-induced selection on clinging performance in an island lizard
Vaughn et al. show that hurricanes drive parallel genomic selection signatures in island anoles. One candidate locus (hs6st1) is associated with rear toe length. CRISPR disruption reduces hindfoot ele...
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Anya Auerbach @aauerbach.bsky.social · 27/07/2026
Hey Bluesky! Emerging from my dissertation-formatting cave to share that I defended my PhD last week! So many incredible people helped me reach this point, especially over the last few months as I scrambled to finish in time. I’m lucky to be surrounded by such good friends.
The cover slide from my dissertation defense talk. The background image is of a river flowing through rainforest in Ranomafana National Park, and along the sides are photos of various birds I studied in-hand. The title text reads: “Ecological diversification across taxonomic scale in three adaptive radiations of Malagasy birds”. Below that are listed my name (Anya Auerbach), my advisor Sushma Reddy, and my committee: Sharon Jansa, Keith Barker, Kieran McNulty, and David Fox.
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Darren Irwin (he / him) @darrenirwin.bsky.social · 25/07/2026
Magic traits, search costs, and the persistence of species in secondary contact Jack R. Farley, Darren Irwin bioRxiv 2026.07.23.740407 www.biorxiv.org/content/10.6...
biorxiv.org
Magic traits, search costs, and the persistence of species in secondary contact
When two populations come into secondary contact, assortative mating can act as a barrier to gene flow. However, when assortative mating is incomplete, associations between preference and cue loci can...
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Anya Auerbach @aauerbach.bsky.social · 27/07/2026
Hey Bluesky! Emerging from my dissertation-formatting cave to share that I defended my PhD last week! So many incredible people helped me reach this point, especially over the last few months as I scrambled to finish in time. I’m lucky to be surrounded by such good friends.
The cover slide from my dissertation defense talk. The background image is of a river flowing through rainforest in Ranomafana National Park, and along the sides are photos of various birds I studied in-hand. The title text reads: “Ecological diversification across taxonomic scale in three adaptive radiations of Malagasy birds”. Below that are listed my name (Anya Auerbach), my advisor Sushma Reddy, and my committee: Sharon Jansa, Keith Barker, Kieran McNulty, and David Fox.
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Evolution Students @ssegrad.bsky.social · 27/07/2026
1/4 In today's funding climate, every grant and fellowship matters. Based on feedback from our GSAC Community Check-In Survey, we're building a growing hub of graduate & postdoctoral funding opportunities and job boards to make them easier to find. 🧵
Funding and job board curated by Dieter Lukas and Pro Manna
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Dr. Stepfanie Aguillón 😷 @s-m-aguillon.bsky.social · 08/07/2026
Interested in joining a growing lab in LA? We’re hiring a postdoc!! Please spread the word to folks in your network and feel free to get in touch with any questions recruit.apo.ucla.edu/JPF11142
Colorful advertisement for the position that reads:

We’re seeking a new Postdoctoral Scholar to lead the analysis and publication of whole-genome sequencing datasets from the northern flicker hybrid zone.

This is a two-year appointment based in the Department of Ecology and Evolutionary Biology at UCLA. Start date is flexible and can begin as early as October 2026.

Basic Qualifications:
• PhD in evolutionary biology, ecology, genomics, or a related field by appointment start date
• Demonstrated ability to work with sequencing datasets
• Strong writing skills with a record of peer-reviewed publications
• Ability to lead independent projects and work collaboratively
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Jeremy Yoder says no war @jbyoder.org · 08/07/2026
Wrote a little something about ecological fitting, a concept that has gently rewired my experience of hikes and wildflower walks, and what it means if most organisms are living, not their best possible life, but well enough. Not the fittest, but the fitted
denimandtweed.jbyoder.org
Not the fittest, but the fitted
A marine blue butterfly (Leptotes marina, native to the Americas) nectaring on the flowers of a white clover (Trifolium repens, native to Europe) in the lawn of a Los Angeles city park. (Photo by me) A little knowledge of natural history is a dangerous thing. This is, first, because knowing a few things — the names of some common wildflowers, or the songs of some neighborhood birds — begets curiosity about more things, and soon enough you've gone from installing…
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