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xipeng1.bsky.social

@xipeng1.bsky.social
75 followers 52 following 32 posts
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xipeng1.bsky.social @xipeng1.bsky.social · 15/09/2026
Mark - total citation >10,000!😄😄😄
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xipeng1.bsky.social @xipeng1.bsky.social · 18/07/2026
link.growkudos.com/1ehfrprhngg
link.growkudos.com
Dark Sectioning Clears Blurry Backgrounds in Fluorescence Microscopy Images
When scientists look at cells under a fluorescence microscope, they often see a "fog" or blurry background that hides the real structures they want to study. This happens because the microscope captur...
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xipeng1.bsky.social @xipeng1.bsky.social · 18/07/2026
Thrilled to see our Dark Sectioning algorithm — a single-frame background removal method for fluorescence microscopy — adopted by Prof. Xiaowei Zhuang's lab in their latest Cell paper! @zhuanglab.bsky.social 📄 Dark Sectioning: doi.org/g9xs3s 📄 Zhuang Lab Cell 2026 paper: doi.org/rf5g
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xipeng1.bsky.social @xipeng1.bsky.social · 17/07/2026
🔬HBmito Crimson — a membrane-anchored voltage sensor that captures mitochondrial near-field potential (Vnf) in living cells at 1000 fps.⚡ Discovered miniature "flickers" — 1000× smaller than action potentials 📄 doi.org/rf2d #Mitochondria #SuperResolution #VoltageImaging #Bioimaging #PhotoniX
doi.org
Imaging mitochondrial electric flickers in intact cells with a membrane-anchored indicator - PhotoniX
Mitochondria are excitable organelles, and their electrophysiological activity across the inner mitochondrial membrane (IMM) plays a critical role in energy metabolism, cell signaling and cell fate regulation. While the transmembrane voltage of the IMM (Δψm) is traditionally measured with Nernstian dyes such as tetramethylrhodamine methyl ester (TMRM), here we introduce HBmito Crimson (HBmito), a novel membrane-anchored voltage sensor to probe mitochondrial near-field potential (Vnf) in intact cells by capturing fluorescence signal variations through rapid optical imaging. Vnf encompasses surface potential and the innermost portion of Δψm. During mitochondrial action potential, HBmito-reported Vnf-related signals show up to a 1.9-fold increase, concurrent with Δψm changes reported by TMRM. At an imaging rate of 1000 frames per second, transient miniature Vnf-related flickers were further revealed. And these events were three orders of magnitude smaller than action potentials and likely reflected the activity of individual mitochondrial ionic channels. These results provide the first optical imaging evidence of fundamental electrophysiological events in intact mitochondria, and highlight a novel approach for studying excitable membranes.
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Reposted by @xipeng1.bsky.social
Science X / Phys.org @sciencex.bsky.social · 09/06/2026
A fluorescence restoration network trained on large images rather than random small patches improved accuracy by 0.5–2 dB over leading patch-based methods and ran large-image inference far more efficiently. doi.org/hb66t4
phys.org
Breaking tunnel vision, imaging AI lifts fluorescence image restoration accuracy and speed
Recent years have witnessed great advances in applying deep learning to improve fluorescence microscopy imaging. However, enhancing the fidelity of image restoration networks and improving their robustness under fluorescence noise remain significant challenges.
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xipeng1.bsky.social @xipeng1.bsky.social · 11/06/2026
Read the latest news from our group: www.eurekalert.org/news-release... 👉 Open source: github.com/YiweiHou/LargePNet-for-fluorescence-image-restoration 📄 Nature Communications 2026 #Microscopy #DeepLearning #BioImageAnalysis #CellBiology #OpenScience #AI4Science #SuperResolution
eurekalert.org
Breaking the 'tunnel vision' limitation: Xi Peng laboratory develops a generic large-view-aggregation fluorescence image restoration network
Peking University, June 9, 2026: Recent years have witnessed great advances in applying deep learning to improve fluorescence microscopy imaging. However, enhancing the fidelity of image restoration n...
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xipeng1.bsky.social @xipeng1.bsky.social · 11/06/2026
🔬 Fluorescence imaging need a Large Net! Most AI models train on tiny 128×128 patches → lose global info LargePNet train on full view 512×512 → see the big picture ✅ 0.5–2 dB PSNR+ ✅ 30 h live cell recording ✅ 1 h tri color STED-level imaging www.nature.com/articles/s41... @pku1898.bsky.social
nature.com
Pushing the limits of fluorescence imaging with a restoration neural network aggregating large-view statistics - Nature Communications
Existing small patch design in CNN and Transformer restoration network deviates from characteristics of fluorescence microscopy. LargePNet overcomes this context-deficiency, significantly improving st...
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xipeng1.bsky.social @xipeng1.bsky.social · 20/05/2026
🔬 Ever seen a mitochondrion “flicker”? We designed HBmito, a membrane voltage sensor, to catch nanoscale nanoscale electrical spikes in real time—the first optical glimpse of single mitochondrial channels in action. #Mitochondria #CellBiology #Biophysics link.springer.com/article/10.1...
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xipeng1.bsky.social @xipeng1.bsky.social · 29/03/2026
FOM Day 1.
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xipeng1.bsky.social @xipeng1.bsky.social · 17/03/2026
Introducing #FASIM: A new microscopy method combining SIM with fluorescence anisotropy, ~100 nm resolution with 0.56% relative error—a >20-fold accuracy improvement, allowing us to map the "crowdedness" (viscosity/molecular interactions) in in live cell in real-time. doi.org/10.64898/202...
doi.org
Fluorescence anisotropy structured illumination microscopy for quantitative super-resolved mapping of cell microenvironment and cytoskeletal dynamics
The crowded intracellular milieu shapes organelle architecture and dynamics, yet nanoscale heterogeneity in its physicochemical properties remains difficult to visualize with conventional fluorescence anisotropy (FA) imaging. Here, we develop fluorescence anisotropy structured illumination microscopy (FA-SIM), which employs orthogonal-polarization structured illumination with dual-angle detection to achieve ∼100-nm resolution and quantitative FA retrieval with 0.56% relative error, representing over 20-fold higher accuracy than conventional FA imaging. With low phototoxicity, FA-SIM enables dual-color, hour-long quantitative super-resolution imaging in cells. Using viscosity standards, defined nanoparticles and small-molecule drug binding assays, we validate FA-SIM as a quantitative reporter of rotational mobility and molecular interactions. In cells, FA-SIM resolves nanoscale crowding heterogeneity, correlates anisotropy landscapes with condensate dynamics, and uncovers a radial crowding gradient across the microtubule network and mitotic spindle. Long-term dual-color imaging further resolves coordinated actin–microtubule remodeling and associated microenvironmental changes. By enabling quantitative, super-resolved mapping of intracellular physical properties in living systems, FA-SIM provides a powerful platform for investigating the physical regulation of cellular organization and dynamics in health and disease. ### Competing Interest Statement Dr. Peng Xi holds the position of Chief Technology Officer (CTO) at Airy Technologies. He declares that there are no additional financial or personal interests that could be perceived as a conflict of interest in relation to the research presented in this paper. The other authors declare no competing interests. National Natural Science Foundation of China, 62025501, 31971376, 92150301, 62411540238, 62335008, 62405010 National Key R&D Program of China, 2022YFC3401100
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xipeng1.bsky.social @xipeng1.bsky.social · 12/12/2025
Thank you! @optica.org @pku1898.bsky.social
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Peking University @pku1898.bsky.social · 01/12/2025
Prof. Xi Peng from #PekingUniversity has been elected as a 2026 Optica Fellow! Optica is the world’s leading organization advancing the science of light. Fellow membership honors those who have served with distinction in #optics and #photonics. Congrats, @xipeng1.bsky.social! @optica.org
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xipeng1.bsky.social @xipeng1.bsky.social · 13/10/2025
Triangle-Beam Interference SIM (3I-SIM)—a method replaces rotating stripes with hexagonal lattice. This innovation slashes redundancy and unlocks breathtaking speed. The system achieves imaging at up to 1,697 Hz, 13 hours, 100,000 snapshots in action: www.sciencenewstoday.org/the-secret-w...
sciencenewstoday.org
The Secret World of Living Cells Comes Alive With a New Microscope
For as long as humans have peered through lenses, the microscope has been our gateway to hidden worlds. From Robert…
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Uri Manor @manorlaboratory.bsky.social · 19/08/2025
Absolutely beautiful paper with some awesome imaging of our AC-ER probe for monitoring ER-associated actin (PMID: 32778832) 🤯
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xipeng1.bsky.social @xipeng1.bsky.social · 04/10/2025
Very proud to be the first PKU Talks interviewed professor!😀😀😀Come and take a look!
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xipeng1.bsky.social @xipeng1.bsky.social · 15/08/2025
Nat. Photonics🔬 Meet 3I-SIM! Instead of stripes, we use 3-beam to generate 2D hex pattern for simultaneous 2D SIM modulation, with >100,000 frames, 13 h neuronal cell movies, ER–lipid-droplet kiss-n-run and millisecond tango. All hard&software open. doi.org/10.1038/s415... @pku1898.bsky.social
doi.org
Triangle-beam interference structured illumination microscopy - Nature Photonics
Triangle-beam interference structured illumination microscopy leverages radially polarized beams to generate two-dimensional lattice illumination patterns. The technique enables a temporal resolution ...
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xipeng1.bsky.social @xipeng1.bsky.social · 04/08/2025
C²SD-ISM combines physical defocus rejection (spinning disk) with adaptive algorithm (DPA-PR), breaking depth limits in tissue super-resolution (↑180 μm), enhances fidelity (92% linear correlation), and supports high-throughput imaging. doi.org/10.1038/s413... Github: github.com/Chauncey-Leu....
doi.org
High-fidelity tissue super-resolution imaging achieved with confocal2 spinning-disk image scanning microscopy - Light: Science & Applications
C²SD-ISM integrates an SD and a DMD to form a dual confocal configuration, enabling deep-tissue super-resolution imaging with DPA-PR reconstruction.
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piatkevich.bsky.social @piatkevich.bsky.social · 18/06/2025
mScarlet3-H (aka mYongHong) is on the cover of Nature Methods! All plasmids are available for free from WeKwikGene wekwikgene.wllsb.edu.cn/publications...
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xipeng1.bsky.social @xipeng1.bsky.social · 19/06/2025
Congratulations to Suyi Zhong, Wei Ren, Ziyi Yang, and Hongyu Wang!
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xipeng1.bsky.social @xipeng1.bsky.social · 30/05/2025
I am very glad to see that our PolarSIM helps the leading scientists to observe richer dynamics and get more discovery! Congratulations to Zhixing team for this brand new palette of fluorescent dyes named after BeiDa! www.nature.com/articles/s41... @pku1898.bsky.social @zhixingchen2.bsky.social
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Zhixing Chen @zhixingchen2.bsky.social · 20/05/2025
Here come our new palette of fluorescent dyes. The BD dyes endeaves to balance glowy brightness, robust photostability, and biocompatibility. Let's boost 4D dynamic super-resolution imaging!!! www.nature.com/articles/s41... @spirochrome.com
nature.com
A palette of bridged bicycle-strengthened fluorophores - Nature Methods
A suite of bridged rhodamine dyes (BriDyes) offers excellent brightness, solubility, photostability, and tunable cell permeability along with resistance to photoblueing, making them exceptional all-pu...
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xipeng1.bsky.social @xipeng1.bsky.social · 30/05/2025
I am very glad to see that our PolarSIM helps the leading scientists to observe richer dynamics and get more discovery! Congratulations to Zhixing team for this brand new palette of fluorescent dyes named after BeiDa! www.nature.com/articles/s41... @pku1898.bsky.social @zhixingchen2.bsky.social
nature.com
A palette of bridged bicycle-strengthened fluorophores - Nature Methods
A suite of bridged rhodamine dyes (BriDyes) offers excellent brightness, solubility, photostability, and tunable cell permeability along with resistance to photoblueing, making them exceptional all-pu...
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xipeng1.bsky.social @xipeng1.bsky.social · 30/05/2025
I am very glad to see that our PolarSIM helps the leading scientists to observe richer dynamics and get more discovery! Congratulations to Zhixing team for this brand new palette of fluorescent dyes named after BeiDa! @pku1898.bsky.social @zhixingchen2.bsky.social
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xipeng1.bsky.social @xipeng1.bsky.social · 30/05/2025
I am very glad to see that our PolarSIM helps the leading scientists to observe richer dynamics and get more discovery! Congratulations to Zhixing team for this brand new palette of fluorescent dyes named after BeiDa! @pku1898.bsky.social @zhixingchen2.bsky.social
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xipeng1.bsky.social @xipeng1.bsky.social · 30/05/2025
Thrilled to introduce our Cover review: High-spatiotemporal-resolution structured illumination microscopy: principles, instrumentation, and applications dx.doi.org/10.3788/PI.2...
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xipeng1.bsky.social @xipeng1.bsky.social · 29/05/2025
Unlock the secrets of cellular dynamics with high-spatiotemporal-resolution structured illumination microscopy! Our latest review explores the principles, instrumentation, and applications of SIM&ISM in live-cell imaging. #Microscopy #SuperResolution #CellBiology dx.doi.org/10.3788/PI.2...
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Peking University @pku1898.bsky.social · 27/05/2025
Seeing Deeper, Clearer than Ever!🔬Prof. Xi Peng’s team from #PKU College of Future Technology introduces Dark Sectioning in Nature Methods—a breakthrough for fluorescence microscopy! A peek into the future of imaging: www.nature.com/articles/s41... #PKUResearch #AcademicSky @natmethods.nature.com
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Nature Methods @natmethods.nature.com · 13/05/2025
For a quick summary of the paper, read the Research Briefing here: www.nature.com/articles/s41...
nature.com
Dark sectioning boosts segmentation accuracy and image quality in fluorescence microscopy - Nature Methods
Dark sectioning is a new method for removing defocused background signal in fluorescence microscopy, leveraging dark-channel priority in natural photography dehazing to substantially enhance optical s...
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Emmanuel Soubies @esoubies.bsky.social · 15/05/2025
Nice work! We integrated this dark-sectioning method into our FlexSIM pipeline (github.com/esoubies/Fle...) as an additional option for handling out-of-focus signal. It works remarkably well!
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Emmanuel Soubies @esoubies.bsky.social · 15/05/2025
In particular, it handles out-of-focus regions more effectively than traditional OTF attenuation.
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xipeng1.bsky.social @xipeng1.bsky.social · 16/05/2025
Our groundbreaking Dark Sectioning technique is now published in Nature Methods! 🎉 It supercharges existing imaging systems: 🔬 Widefield → Confocal 🔬 Single-photon → Multiphoton 🔬 2D-SIM → 3D-SIM Now integrated in Airy PolarSIM and #FlexSIM! doi.org/10.1038/s415... #Microscopy #Fluorescence
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