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Wilfling Lab

@wilflinglab.bsky.social
621 followers 498 following 24 posts

Investigating mechanisms of eukaryotic cellular quality control with a focus on autophagy @MPIbp via #cryoET, #teamtomo, #cellbiology and #massspectrometry

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Reposted by Wilfling Lab
Felix Kraus @sauerkrausi.bsky.social · 07/07/2026
Happy to share our neuronal lysosomal storage disorder toolkit has been published in PNAS! 📚Paper: www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Reposted by Wilfling Lab
ARCTiC: Autophagy Research Centre Targeting Cancer @arcticautophagy.bsky.social · 25/05/2026
Excited to welcome the autophagy community in Oslo for the International Autophagy Conference 2026. 📍 Holmen Fjordhotell, Oslo 📅 25–28 May 2026 Looking forward to outstanding science and discussions on the future of autophagy research. Thanks to our sponsors: @tandfonline @embojournal @NoAge100
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Reposted by Wilfling Lab
Felix Kraus @sauerkrausi.bsky.social · 24/03/2026
Updated preprint 🧵 We mapped how loss of 23 LSD genes reshapes neuronal proteomes in cortical (iN) and dopaminergic (iDA) neurons New in v2: We added a computational PPI pipeline assessing KO-dependent vulnerability at the interaction and complex level.
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Felix Kraus @sauerkrausi.bsky.social · 24/03/2026
Huge thanks to all the fantastic co-authors and collaborators, especially @harvardcellbio.bsky.social, @harvardcellbio.bsky.social , @wilflinglab.bsky.social, Memorial Sloan Kettering Cancer Center, @citehms.bsky.social @jencwaters.bsky.social, and @hms-iac.bsky.social, @fedegasparoli.bsky.social!
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Wilfling Lab @wilflinglab.bsky.social · 20/01/2026
Also check out a fantastic complementary study from the Jeffery Kelly lab! They independently uncover how LLOMe disrupts lysosomes by forming amyloids that may act as seeds for pathological aggregates 🔗 doi.org/10.64898/202...
doi.org
Cathepsin C–Catalyzed Ligation Generates Intralysosomal Amyloid Fibrils from Dipeptide Esters
Amyloid fibril-associated endolysosomal dysfunction is implicated in multiple neurodegenerative diseases. We report the rapid generation of intralysosomal amyloid fibrils by simply treating cells with certain dipeptide methyl esters. Cathepsin C mediates the ligation of dipeptides into oligopeptides that, sequence-dependently, self-assemble into amyloid fibrils. Progressive fibril growth, not fibril deposition, mediates lysosomal membrane permeabilization. Cryo-electron tomography studies reveal intralysosomal fibrils and broken lysosomal membranes upon dipeptide treatment. Certain oligopeptide fibril structures are competent to cross-seed the aggregation of neurodegeneration-associated Tau(P301S) at lysosomal sites. Similarly, the degree of lysosomal membrane permeabilization and ESCRT-repair response can be tuned with dipeptide sequence variation. The presented Cathepsin C-dependent amyloid fibril formation approach lends itself toward the development of novel tools to further probe lysosomal biology and pathobiology. ### Competing Interest Statement The authors have declared no competing interest. National Institute on Aging, https://ror.org/049v75w11, RF1AG073418 National Center for Advancing Translational Sciences, https://ror.org/04pw6fb54 Department of Education, USA, P031S240270 Freedom Together Foundation Chan Zuckerberg Initiative (United States), CZII-2023–327779 George E. Hewitt Foundation for Medical Research
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Wilfling Lab @wilflinglab.bsky.social · 20/01/2026
Huge thanks to all amazing co-authors and collaborators — this work was a true team effort! @mmedina300kv.bsky.social @nanigrotjahn.bsky.social @andschwarz.bsky.social @erin-schuman.bsky.social @sauerkrausi.bsky.social @harperlabhms.bsky.social @sonjawelsch.bsky.social @hummerlab.bsky.social
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Wilfling Lab @wilflinglab.bsky.social · 20/01/2026
LLOMe has long been used to study lysosomal damage, yet how it works has remained a mystery. Using cryo-electron tomography, we show it forms amyloid structures inside lysosomes that mechanically rupture membranes – revealing a new paradigm for lysosomal failure. 🔗 doi.org/10.64898/202... #CryoET
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Wilfling Lab @wilflinglab.bsky.social · 15/01/2026
Thank you Elias!
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Wilfling Lab @wilflinglab.bsky.social · 13/01/2026
Many thanks to first authors @emboyle.bsky.social, @sergiocruzleon.bsky.social, @structjavi.bsky.social and Johann Brenner and our fantastic collaborators from the Kraft @kraftlabfr.bsky.social, Hummer @hummerlab.bsky.social, Milles @millessigrid.bsky.social and Hunte labs for all their great work!
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Wilfling Lab @wilflinglab.bsky.social · 13/01/2026
In this study we investigate the architecture of aminopeptidase-1 condensates directly inside cells at molecular resolution! We show how transient local structures can mediate phase separation, directly linking amino acid sequence to condensate material properties and biological function.
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Wilfling Lab @wilflinglab.bsky.social · 13/01/2026
We are excited to share our new preprint which is now available to read on biorXiv: doi.org/10.64898/202... 🎉🎉🎉
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Wilfling Lab @wilflinglab.bsky.social · 13/01/2026
Many thanks to first authors @emboyle.bsky.social, @sergiocruzleon.bsky.social, @structjavi.bsky.social and Johann Brenner and our fantastic collaborators from the Kraft @kraftlabfr.bsky.social, Hummer @hummerlab.bsky.social, Milles @millessigrid.bsky.social and Hunte labs for all their great work!
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Wilfling Lab @wilflinglab.bsky.social · 20/11/2025
Yes was absolute fun! Like always a fantastic collaboration.
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Reposted by Wilfling Lab
Claudine Kraft's Lab @kraftlabfr.bsky.social · 12/03/2025
🔄 Repost because the previous link was broken! To degrade or not to degrade! We put together an Autophagic Punctum with @wilflinglab.bsky.social on our latest paper, take a look if you're interested! 🔗 www.tandfonline.com/doi/full/10....
tandfonline.com
To degrade or not to degrade: how phase separation modulates selective autophagy
Selective macroautophagy/autophagy relies on newly formed double-membrane compartments, known as phagophores, to sequester and recycle diverse cellular components, including organelles, biomolecula...
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Wilfling Lab @wilflinglab.bsky.social · 22/02/2025
Looking forward to this fantastic meeting!
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Reposted by Wilfling Lab
Claudine Kraft's Lab @kraftlabfr.bsky.social · 07/01/2025
🚨 Paper Alert! We’re starting off the year with our latest publication in @naturecellbiology.bsky.social on the role of phase separation in selective autophagy initiation! This work was a close and exciting collaboration with @wilflinglab.bsky.social 🔗 nature.com/articles/s41... Here's a thread👇
nature.com
Phase separation of initiation hubs on cargo is a trigger switch for selective autophagy - Nature Cell Biology
Licheva, Pflaum, Babic, Mancilla et al. show that low-affinity cargo–receptor interactions promote autophagy receptor mobility and condensation of the scaffold protein Atg11 to trigger initiation hub ...
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Wilfling Lab @wilflinglab.bsky.social · 08/01/2025
Thanks to all collaborators, a fantastic collaboration with the ‪@kraftlabfr.bsky.social‬, several fun retreats & a special thanks to the first authors Mariya, Jeremy, @riccardobabic.bsky.social, and @heaktor.bsky.social
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Wilfling Lab @wilflinglab.bsky.social · 08/01/2025
Our study provides insights into the process of initiation during selective autophagy and offers new ideas for developing approaches to selectively degrade unwanted cellular material by autophagy.
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Wilfling Lab @wilflinglab.bsky.social · 08/01/2025
3) Experiments using mammalian cell systems reveal striking similarities where FIP200 (Atg11 homologue) clusters on the cargo surface, connecting the phagophore assembly site to the ER. Changing receptor affinity of p62 within condensates resulted in a degradation defect similar to yeast.
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Wilfling Lab @wilflinglab.bsky.social · 08/01/2025
2) The low affinity of the receptor for the cargo also allows the initiation hubs to rearrange and establish organelle contact sites necessary to form the pre-autophagosomal structure. Reconstitution of these features allowed us to transform a viral protein expressed in yeast into a neo-cargo.
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Wilfling Lab @wilflinglab.bsky.social · 08/01/2025
1) These low affinity interactions are important for the formation of Atg11 condensates at the cargo surface. Atg11 condensates act as initiation hubs to recruit core autophagy machinery proteins such as Atg1 and Atg9.
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Wilfling Lab @wilflinglab.bsky.social · 08/01/2025
What happens if you change the physical properties of an autophagic cargo? By altering the low-affinity interaction of autophagic receptors with or within their cargo, we observed a severe degradation defect in budding yeast.
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Wilfling Lab @wilflinglab.bsky.social · 08/01/2025
Check out our latest publication in @naturecellbiology.bsky.social on the role of phase separation in selective autophagy initiation! This was done in a fantastic collaboration with ‪@kraftlabfr.bsky.social‬ www.nature.com/articles/s41... Short teaser below 👇👇👇
nature.com
Phase separation of initiation hubs on cargo is a trigger switch for selective autophagy - Nature Cell Biology
Licheva, Pflaum, Babic, Mancilla et al. show that low-affinity cargo–receptor interactions promote autophagy receptor mobility and condensation of the scaffold protein Atg11 to trigger initiation hub ...
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Wilfling Lab @wilflinglab.bsky.social · 11/12/2024
Please share!
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Wilfling Lab @wilflinglab.bsky.social · 11/12/2024
Great opportunity! We are looking for a PhD student to work on novel sample preparation methods for cryo-electron tomography.
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Wilfling Lab @wilflinglab.bsky.social · 04/12/2024
Thanks Sascha.
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Wilfling Lab @wilflinglab.bsky.social · 03/12/2024
Congrats Mariana!
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Wilfling Lab @wilflinglab.bsky.social · 03/12/2024
Humbled and excited to join the EMBO young investigator community. Congratulations to all and looking forward to meeting you in the future. www.embo.org/press-releas...
embo.org
Twenty-seven scientists become EMBO Young Investigators – Press releases – EMBO
The group leaders join an international network of nearly 800 life scientists and receive financial support
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Wilfling Lab @wilflinglab.bsky.social · 03/12/2024
I am humbled to be a part of this amazing community. Thanks to the entire group, including fantastic colleagues and mentors along the way.
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Wilfling Lab @wilflinglab.bsky.social · 03/12/2024
Congrats Yasin! That is fantastic. You are much closer to Frankfurt now 😁
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