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voigtvision.bsky.social

@voigtvision.bsky.social
662 followers 1.1K following 61 posts

🔬 & 👁️ & 🐟-News & Views by Fabian Voigt - Branco Weiss Fellow in the Engert lab at MCB @harvard.edu. Previously at UZH Zurich with Fritjof Helmchen. #mesoSPIM developer

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Reposted by @voigtvision.bsky.social
Benoit Ladoux @bladoux.bsky.social · 08/10/2026
🔬 We're hiring a Laboratory Manager! Join our growing international team at the Max Planck Center for Physics and Medicine in Erlangen! 🧬 Cell & molecular biology 🧪 Lab coordination & experimental research 📩 Apply now: [www.fau-jobs.de/jobposting/8173a980…]
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voigtvision.bsky.social @voigtvision.bsky.social · 14/09/2026
Come work in Erlangen - that's the dream here as well 😊🔬🐠 mpzpm.mpg.de/research/fab...
mpzpm.mpg.de
Fabian Voigt
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voigtvision.bsky.social @voigtvision.bsky.social · 03/09/2026
❗ Please reach out if you're interested in working at the interface of photonics and neuroscience 🔭 🧠 🔬 🐟 - especially if you have experience with zebrafish, calcium imaging, metasurfaces & nanofabrication. I'll be hiring at all levels (postdocs, PhD students, technicans, MSc & BSc students etc.)!
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voigtvision.bsky.social @voigtvision.bsky.social · 03/09/2026
📢 Superhappy to announce that I've been awarded a 2.5M€ @erc.europa.eu Starting Grant for the project "KALEIDOSCOPE - metasurface-based brain observatories" 🥳🔬 🧠 🐟🥳 📢. The grant will support starting my lab ( voigt-lab.org ) at @mpi-scienceoflight.bsky.social. erc.europa.eu/news-events/...
erc.europa.eu
Starting Grants 2026: Examples of projects
The European Research Council (ERC) has announced the awarding of 421 Starting Grants to outstanding early-career researchers across Europe, as part of the Horizon Europe programme. To illustrate the ...
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voigtvision.bsky.social @voigtvision.bsky.social · 31/08/2026
After 5 years in the lab of Florian Engert at @harvard.edu, it's time to move on and start the Voigt lab ( voigt-lab.org ) at the MPZPM & @mpi-scienceoflight.bsky.social in Erlangen, Germany! Many thanks to all Engert lab members for making the lab so much fun & of course Florian!
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voigtvision.bsky.social @voigtvision.bsky.social · 20/08/2026
🤩 It's time for some invertebrate eye candy! 🤩 Here's a ctenophore (or comb jelly) stained with phalloidin by John Alexander Salazar Hernandez & imaged on an exaSPIM built by Kaelin Wulf of the team of @adamkglaser.bsky.social as part of the FHL Functional Biodiversity course #microscopy
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voigtvision.bsky.social @voigtvision.bsky.social · 12/08/2026
🚨 Now out in @aaas.org Science Advances 🚨: aDISCO: a protocol for clearing & antibody-staining human formalin-fixed paraffin-embedded (FFPE) tissue by Anna Maria Reuss! 🧠🔬#lightsheet #Microscopy @mesospim.bsky.social @ptrrupprecht.bsky.social www.science.org/doi/10.1126/...
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voigtvision.bsky.social @voigtvision.bsky.social · 07/08/2026
The enshittification of Ebay can be quite funny: I have a search for @thorlabs.bsky.social parts set up as a bookmark and it recently started showing me more and more musical instruments - clearly, every #optics & #laser lab needs a clarinet!
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Reposted by @voigtvision.bsky.social
Zebrafish Rock! 🎃 @zebrafishrock.bsky.social · 07/07/2026
You had us hooked at tissue-clearing an adult #zebrafish 😍
Supplementary Figure 3. Blood-vessel Visualization in Zebrafish and African Turquoise Killifish (A) Tissue-clearing protocol for whole adult zebrafish. PFA: paraformaldehyde, tB: tert-Butanol, THF: tetrahydrofuran, sDBE: stabilized dibenzyl ether, PEGMEMA500: polyethylene glycol methyl ether methacrylate 500 (B) Brightfield (top) and darkfield (bottom) images of adult casper zebrafish. (C–E) Light-sheet images of tissue-cleared samples showing vasculature. (C) Brain of juvenile zebrafish (5 months old) and African turquoise killifish (ATK) (5 weeks old) imaged with a 16× (NA-0.6) objective showing vasculature. Image on OMA-LSFM light sheet microscope. (D) Whole-body imaging of juvenile (5 months old, top) and adult zebrafish (20 months old, bottom) using a 2× NA-0.14 objective. Image on OMA-LSFM light-sheet microscope.
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voigtvision.bsky.social @voigtvision.bsky.social · 06/07/2026
The setup is also using a Teledyne Kinetix camera to reduce the number of tiles in really large samples such as this #cleared adult #zebrafish:
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voigtvision.bsky.social @voigtvision.bsky.social · 06/07/2026
The @mesospim.bsky.social #mesoSPIM ultra uses commercial dipping objectives with their dipping caps removed to integrate them in the horizontal #mesoSPIM detection path:
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voigtvision.bsky.social @voigtvision.bsky.social · 06/07/2026
🚨 New Preprint! 🚨: A new method for quantifying #tissue #clearing and a next-get #lightsheet #Microscope - the #mesoSPIM ultra by Marko Pende, @jcregg.bsky.social, @murawalalab.bsky.social @mdibl.org & many more! Preprint: www.biorxiv.org/content/10.6... Github: github.com/mesoSPIM/mes...
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voigtvision.bsky.social @voigtvision.bsky.social · 09/06/2026
Sorry for causing fear of scanheadlessness! 🔬
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voigtvision.bsky.social @voigtvision.bsky.social · 22/05/2026
The MOSAIC microscope by @supgokul.bsky.social & Eric Betzig & many others is out! #adaptive #optics #lightsheet #Microscopy rocks! www.nature.com/articles/s41...
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voigtvision.bsky.social @voigtvision.bsky.social · 12/05/2026
🚨 New Preprint alert 🚨: The #Altair #lightsheet #Microscopy family is growing: Altair-dvOPM - an open-access direct-view oblique plane microscope based on photographic lenses by @kevin-dean.bsky.social & @retof.bsky.social Manuscript: www.biorxiv.org/content/10.6... & thedeanlab.github.io/altair/
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voigtvision.bsky.social @voigtvision.bsky.social · 13/04/2026
Utterly stunning work & beautiful data taken with the #exaSPIM by @adamkglaser.bsky.social! www.biorxiv.org/content/10.6...
biorxiv.org
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voigtvision.bsky.social @voigtvision.bsky.social · 07/04/2026
Some are trying their best...
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voigtvision.bsky.social @voigtvision.bsky.social · 27/03/2026
😂
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voigtvision.bsky.social @voigtvision.bsky.social · 26/03/2026
🚨New Lab Alert!🚨 Superhappy to announce that I will start my lab combining photonics & neuroscience at the Max Planck Center for Physics & Medicine in Erlangen & @mpi-scienceoflight.bsky.social in January 2027! Reach out if you're interested in internships, BSc, MSc & PhD & postdoc projects!
Max Planck Center for Physics and Medicine buildingMax Planck Instittute for the Science of Light building
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voigtvision.bsky.social @voigtvision.bsky.social · 25/03/2026
Delightful new preprint by @tuthill.bsky.social @bingbrunton.bsky.social & Co: www.biorxiv.org/content/10.6... "This exercise teaches us nothing about either animal and exposes a core peril of connectome-body models: behavioral fidelity is achievable without biological fidelity" 😂😂😂
biorxiv.org
The digital sphinx: Can a worm brain control a fly body?
Animal intelligence is not purely a product of abstract computation in the brain, but emerges from dynamic interactions between the nervous system and the body. New connectome datasets and musculoskeletal models now enable integrated, closed-loop simulations of the neural and biomechanical systems of the fruit fly Drosophila, an ideal model organism to investigate embodied intelligence. However, many biological parameters of the nervous system and the body, as well as how they interface, remain unknown. To fill such gaps, researchers are turning to deep reinforcement learning (DRL), a data-driven optimization framework, to create virtual animals that imitate the behavior of real animals. Here, we provide a cautionary tale about the interpretation of such models. We constructed a virtual chimera of two phylogenetically distant species: a connectome of the C. elegans nematode worm and a biomechanical model of the fly body. The worm connectome receives sensory information from the fly body, and an artificial neural network is trained with DRL to map worm motor neuron activations to the fly's leg actuators. The resulting digital sphinx produces highly realistic fly walking - yet it is biologically meaningless. This exercise teaches us nothing about either animal and exposes a core peril of connectome-body models: behavioral fidelity is achievable without biological fidelity, making such models easy to overinterpret. Done carefully, virtual animals can be powerful partners to biological experiments, but only if their components and interfaces are grounded in biology. ### Competing Interest Statement The authors have declared no competing interest. NIH, U01NS136507, R01NS14543
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voigtvision.bsky.social @voigtvision.bsky.social · 28/02/2026
🚨Preprint alert🚨 Mapping of 3D collagen architecture with #tissueclearing, @mesospim.bsky.social #lightsheet #Microscopy, the Schmidt #multiimmersion microscope objective & #deeplearning in healthy tissue & wound healing by Wout Houbart & Thomas Naert & Co! www.biorxiv.org/content/10.6...
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Reposted by @voigtvision.bsky.social
MDI Biological Laboratory @mdibl.org · 23/02/2026
This amazing #microscopymonday capture of a young African turquoise killifish's brain blood vessels by the MDI Bio Lab's Haller lab was imaged using the MesoSPIM in the MDIBL Light Microscopy Facility. #researchmatters #microscopy #fluorescentproteins #lightsheet 🧪 🐟🎸 🍎 👩‍🔬 🌎 🖥️ 🧬
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Reposted by @voigtvision.bsky.social
Ali Maximilian Erturk @erturklab.bsky.social · 08/02/2026
A new preprint introduces aDISCO, a DISCO-based clearing approach that makes whole archival FFPE human tissues transparent and antibody-compatible, enabling true 3D light-sheet histology across brain & multiple organs at cellular resolution. Aguzzi & Helmchen teams. www.biorxiv.org/content/10.1...
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Reposted by @voigtvision.bsky.social
Kevin Dean @kevin-dean.bsky.social · 05/02/2026
In @elife.bsky.social: A high-resolution, easy-to-build light-sheet microscope for subcellular imaging doi.org/10.7554/eLif...
doi.org
A high-resolution, easy-to-build light-sheet microscope for subcellular imaging
An accessible light-sheet microscope delivers subcellular-resolution, multicolor volumetric, and live-cell imaging, lowering barriers to state-of-the-art performance.
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voigtvision.bsky.social @voigtvision.bsky.social · 20/12/2025
That's super cool, congrats! 🥳
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voigtvision.bsky.social @voigtvision.bsky.social · 20/12/2025
(And that scan lens is essentially a really nice NA 0.125 microscope objective with 32 mm FOV and an accessible pupil location)
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voigtvision.bsky.social @voigtvision.bsky.social · 20/12/2025
The sup material of that same paper includes their scan lens design - so it seems like they designed it as a combo.
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
The Handbook of optical systems, Vol 4: Survey of optical instruments, Ch 7 on Microscope Optics (p 646) gives a few more reasons (very good chapter btw).
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
The big exception are stereo-microscopes and macro-zoom systems: Building a zoom system that's fully telecentric across all magnifications is not that trivial, so usually, the way macro systems are designed is that they get more telecentric with higher NA (where the effects are more apparent)
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
Similarly, in a classical wide-field microscope, being non-telecentric would mean that objects get bigger or smaller as you focus up and down - so they get blurry and change size. That's quite annoying as well, especially for visual use
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
I'm quite sure that all of these are telecentric or as close as possible. If you have a correction collar and expect varying media, being non-telecentric would mean that you have medium-dependent magnification (because the chief ray get's refracted differently at the cover slip) - that's annoying
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
You can still design tube lens + objective as a matched pair in the latter case and it will make the whole thing a little easier to balance. As usual, it's a high dimensional design space and there's many solutions that can make biologists happy
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
This is what Dan Flickinger did for the system that became the Janelia/Thorlabs multiphoton mesoscope: elifesciences.org/articles/14472
elifesciences.org
A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging
An optical microscopy approach with an ultra-large field of view but retained subcellular resolution allows simultaneous imaging of neural activity in widely dispersed brain regions.
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
In my view, the trade-off is not really worth it. My suggestion would be to not just design the objective, but a whole objective/tubelens/scan lens combo that works together - this way, you can balance aberrations (in particular chromatic etc.) between them.
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voigtvision.bsky.social @voigtvision.bsky.social · 19/12/2025
Yes, you can force a different pupil location onto an objective - essentially that's what's happening in a misaligned laser scanning scope or an OPM with a wrongly matched O1/O2 combo. The trade-off is that you might see other artifacts - for example vignetting, higher aberrations...
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voigtvision.bsky.social @voigtvision.bsky.social · 18/12/2025
This figure is from Sup Figure 1 of the 2019 @mesospim.bsky.social paper: www.nature.com/articles/s41...
nature.com
The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue - Nature Methods
The mesoSPIM is an open hardware axially scanned light-sheet microscope for the rapid imaging of large cleared samples with isotropic resolution.
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voigtvision.bsky.social @voigtvision.bsky.social · 18/12/2025
Telecentricity will make integration into custom scopes much easier. Not being telecentric means that your magnification/FOV depends on the working distance: Now imagine building an OPM with it: If it's not telecentric, the lightsheet will change its lateral width along its propagation direction
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Reposted by @voigtvision.bsky.social
Doug Shepherd @dpshepherd.bsky.social · 10/12/2025
We're still exploring how to improve LSFM performance with "big" detection air objectives, where field curvature often limits achievable FOV. Here, Steven introduces curvedASLM, a method to dynamically correct field curvature (along one axis) in axially scanned setups www.biorxiv.org/content/10.6...
Schematic on how to correct field curvature along light-sheet propagation axis.
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EMBO @embo.org · 03/12/2025
The EMBO Practical Course "Hack your microscope" in Oeiras, PT, 20–25 Apr 2026 aims to innovate, democratize advanced #imaging technologies and shape the future of open-source #microscopy – Apply now! Deadline: 12 Dec meetings.embo.org/event/26-microsco… #EMBOmicroscope #EMBOevents 🧪
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voigtvision.bsky.social @voigtvision.bsky.social · 02/12/2025
Supercool work! What's the difference between the lite version ( github.com/uhlmanngroup... ) and the original version ( github.com/uhlmanngroup... ) from a user perspective? Also, how complicated/painful would it be to extend this to 3D?
github.com
GitHub - uhlmanngroup/ShapeEmbedLite: ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis
ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis - uhlmanngroup/ShapeEmbedLite
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voigtvision.bsky.social @voigtvision.bsky.social · 17/11/2025
Say hi to Alain! Hope you all have a fun SfN!
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voigtvision.bsky.social @voigtvision.bsky.social · 23/10/2025
As far as I understand, it's a complete redesign with the same specs and mechanical housing as the CRS8k to allow backward-compatibility.
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voigtvision.bsky.social @voigtvision.bsky.social · 22/10/2025
The long wait is finally over: The @thorlabs.bsky.social 8 kHz resonant scanner is available 🔬! It would be lovely if there would be a 30 mm cube compatible & acoustically shielded mount as well, but I'm sure that's going to come eventually! #Microscopy www.thorlabs.com/newgrouppage...
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voigtvision.bsky.social @voigtvision.bsky.social · 29/09/2025
Philipp Keller, Benquan Wang, and Dan Flickinger at Janelia have designed a mirror objective for expansion samples that has NA 1 over a 12 mm FOV - a superimpressive setup! The only thing that's out about it is a patent application: www.freepatentsonline.com/y2023/000398...
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voigtvision.bsky.social @voigtvision.bsky.social · 29/09/2025
Thomas Naert recently published a paper on a toolbox for DNA editing with some Schmidt objective data: www.nature.com/articles/s41...
nature.com
Precise, predictable genome integrations by deep-learning-assisted design of microhomology-based templates - Nature Biotechnology
Genomic integration of DNA templates is made more precise through microhomology-focused design.
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voigtvision.bsky.social @voigtvision.bsky.social · 22/08/2025
One of the people I'm indebted the most for creating stunningly beautiful #mesoSPIM samples was Martina Schaettin - who tragically passed away in March this year. To honor her memory, Elkhan Yusifov created an award - submit your best #microscopy images & videos! www.linkedin.com/company/mart...
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voigtvision.bsky.social @voigtvision.bsky.social · 22/08/2025
Thanks to @nvladimus.bsky.social the @mesospim.bsky.social #lightsheet #Microscope community is now on forum.image.sc/tag/mesospim !
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voigtvision.bsky.social @voigtvision.bsky.social · 21/08/2025
Definitely the most unexpected @mesospim.bsky.social #lightsheet #microscopy application of the past years: Hunting dark matter with a lightsheet microscope! #astronomy 🔭🔬https://arxiv.org/abs/2503.20732
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voigtvision.bsky.social @voigtvision.bsky.social · 13/08/2025
#Deeplearning-based #CRISPR DNA integration and editing by Thomas Naert & Sören Lienkamp & Co with lots of @mesospim.bsky.social #lightsheet #Microscopy data of tadpoles (and some taken with the #Schmidt #multiimmersion objective prototype!) 🔬🐸 www.nature.com/articles/s41...
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voigtvision.bsky.social @voigtvision.bsky.social · 14/07/2025
The @thorlabs.bsky.social LCPA2 lines are a little more straight, but a little wider as well...
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