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Sebi @sebi06.bsky.social · 07/10/2026

I hope to release this soon (before the OME-ZARR hackathon hopefully)

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Sebi @sebi06.bsky.social · 07/10/2026

I think yes it would work.

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Simon Cleary @simoncleary.bsky.social · 01/10/2026

Nikon: '"At this time, we don't see that any rules were violated," it said in a statement.' www.bbc.co.uk/news/article...

bbc.co.uk

Tiny image sparks big backlash in Nikon photo contest

Dr Ning Xu denies he broke the rules of Nikon's annual Small World In Motion contest.

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Sebi @sebi06.bsky.social · 30/09/2026

Hi all, prototype of a napari-zenapi-streaming plugin is working using @zeiss-microscopy.bsky.social and @napari.org. - stream pixels from ZEN into multi-dim array and display live - stream pixels from ZEN directly into OME-ZARR (see video) For viewing I used: find-nuclei.github.io

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Sebi @sebi06.bsky.social · 22/09/2026

I just learned something new at the Lab of the Future Meeting. Beyond FAIR data there is now CLEAR data. - Contextualized - Lineaged - Evaluated - Accountable - Regulated "FAIR gets the data to the machine, CLEAR let's the machine act on it." I must say I agree.

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Sebi @sebi06.bsky.social · 11/09/2026

There might be a middle ground where research engineers use LLMs to create customized UIs etc but explicitly set up rails tfor the LLMs to use established algorithms?

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jerome mutterer @jmutterer.bsky.social · 28/08/2026

I've made a video about Fig_Space, the next version of FigureJ. It has nice new features, I hope you like it. youtu.be/bTKcXN4p-JM

youtu.be

FigSpace Fiji plugin demo

YouTube video by jerome mutterer

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Sebi @sebi06.bsky.social · 25/08/2026

I extended the pypi.org/project/czit... package with a little extra tool that allows to quickly inspect all the well & HCS data from a CZI file. Very useful as a pre-flight check for further processing or when converting to on #OME-ZARR with HCS layout.

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Sebi @sebi06.bsky.social · 24/08/2026

Hi all, I updated pypi.org/project/czit... (0.21.0) and pypi.org/project/napa... (0.12.1) again. Now in @napari.org also opening large CZI files should work much better when using the plugin. The image shown in the video is about 100 GB on disk.

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Sebi @sebi06.bsky.social · 19/08/2026

ZEISS arivis Cloud preprint is now available on bioRxiv! We are excited to share that our manuscript preprint on ZEISS arivis Cloud is now available on bioRxiv. www.biorxiv.org/content/10.6... Kudos to my colleagues for this.

Annotation interface in ZEISS arivis Cloud showing partial annotations for mitochondria (yellow) and background (purple) classes on a FIB-SEM slice of a HeLa cell. Partial annotations allow users to label only the most informative regions rather than every pixel in the training image. Sample courtesy of Anna Steyer and Yannick Schwab, EMBL.

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Sebi @sebi06.bsky.social · 02/08/2026

czitools 0.20.1 is out! 🎉 Improved CZI/HCS → OME-Zarr export, lazy Dask reading, lighter imports, better napari notebook support, and NDV visualization. Github: github.com/sebi06/czito... PyPi: pypi.org/project/czit...

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#DerApotheker 🥷 @derapotheker.bsky.social · 11/07/2026

Es spielt keine Rolle, wie beliebt die Homöopathie ist, ob sie erstattet wird oder nicht, SIE HAT KEINE WIRKUNG, DIE ÜBER DEN PLACEBOEFFEKT HINAUSGEHT. Heute nicht, morgen nicht und übermorgen auch nicht. Das wird sich auch niemals ändern. Niemals. #DerApotheker 🥷

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Sebi @sebi06.bsky.social · 12/06/2026

Sounds almostvto goid to be true :-) Congrats!

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Danielle Beckman @daniellebeckman.bsky.social · 20/05/2026

Beautiful work published by my new Lab at @nature.com today! @dorie00.bsky.social et al. created MouseMapper, an AI-powered tool that identifies & maps cells/tissues throughout the whole mouse body. We can now use this for different diseases, such as #LongCovid. This is AI being used the right way!

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Sebi @sebi06.bsky.social · 14/04/2026

I just got our new stickers from our COP Python at Zeiss (@zeiss-microscopy.bsky.social is of course part of It). Cool, isn't it :-)

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Sebi @sebi06.bsky.social · 02/04/2026

Amazing to see you go all in.

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Sebi @sebi06.bsky.social · 29/03/2026

Since @napari.org just released 0.7.0 I also checked if my to little plugins still work and released new versions with some small updates. pypi.org/project/napa... pypi.org/project/napa...

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Sebi @sebi06.bsky.social · 27/03/2026

Friday fun with: pyapp-kit.github.io/ndv/latest/ pymmcore-plus.github.io/ome-writers/ github.com/zeiss-micros... - run an acquisition in ZEN - capture the pixel stream via ZEN API - write it directly to an OME-ZARR using ome-writers - display it in the NDV viewer. Also works with @napari.org 😉

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Sebi @sebi06.bsky.social · 19/03/2026

Hi all fans of #smart #microscopy, we from @zeiss-microscopy.bsky.social have just published a new application note: "Study Mitotic Progression with Guided Acquisition – Rare Event Detection" go2.zeiss.com/ODk2LVhNUy03... For more details: forum.image.sc/t/applicatio...

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Sebi @sebi06.bsky.social · 16/03/2026

Any slides available already?

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Sebi @sebi06.bsky.social · 12/03/2026

I tried out my updated image readers for CZI files with the new (at least for me) NDV viewer: github.com/pyapp-kit/ndv and I am really impressed. This several GBs multi-dimension stack open super quickly (dask lazy arrays) and navigation works nicely.

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Sebi @sebi06.bsky.social · 11/03/2026

Congratulations and all the best for you!

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Sebi @sebi06.bsky.social · 15/01/2026

Cool. What is the major advantage over pyapp-kit.github.io/magicgui/ ?

pyapp-kit.github.io

magicgui

Type-based GUI creation for Python

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Sebi @sebi06.bsky.social · 16/12/2025

Congrats! This is really cool.

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Sebi @sebi06.bsky.social · 15/12/2025

Amazing and super, super important!

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Dr. Lucky Tran @luckytran.com · 19/11/2025

I really hate it when scientists keep saying that “we need to rebuild trust in science,” because it implies that scientists are to blame for the mistrust rather than the millions of dollars of dark money that have funded political attacks on science in order to advance a far right agenda.

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Sebi @sebi06.bsky.social · 19/11/2025

I am still digesting all the info from the OME-NGFF hackathon last week. So I decided to make a little UI for some of the code created there (just to play around), which one can easily show to interested colleagues 😜. CZI --> OME-ZARR with some options ... By far not perfect but still fun!

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ZEISS Microscopy @zeiss-microscopy.bsky.social · 19/11/2025

ZEISS Lightfield 4D has been nominated for the prestigious Thuringian Innovation Award! 🎉The jury has made their selections - now it's your turn to decide on the "Audience Award 2025". 👉 Support us with a "thumbs up" : zeiss.ly/innovationspreis2025-voting Voting is open until Nov 21, 2025. ⌛

ZEISS Microscopy development team of ZEISS Lightfield 4D microscope system

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Sebi @sebi06.bsky.social · 19/11/2025

Vote for this really cool system (totally biased opinion) :-)

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Sebi @sebi06.bsky.social · 18/11/2025

It was an amazing event and I learned a lot which will help me to drive our discussions about OME-ZARR at @zeiss-microscopy.bsky.social Thanks for having me there.

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Sebi @sebi06.bsky.social · 07/11/2025

Hi Fans of Feedback Microscopy, what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org? Btw, it works as well in Fiji&ImageJ :-) Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.

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Sebi @sebi06.bsky.social · 03/11/2025

I honestly think that a clear and smart regulation of AI can be a strong competive advantage for Europe. Unregulated AI in contrast might destroy the world we know and love ... I count on you @florianjug.bsky.social

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Sebi @sebi06.bsky.social · 27/10/2025

I just meant that a while ago i started to read CZI images into Xarrays. Before that I had to use custom code to label the axis sliders in Napari, but now this just works out-of-the-box thanks to labelled arrays.

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Sebi @sebi06.bsky.social · 24/10/2025

This works already, doesn't it. In my (experimental) github.com/sebi06/napar... I was nicely surprised to see that using Xarrays made my custom code to label axes in Napari based on dimension order useless :-) It works now out of the box