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Santam Chakraborty

@santam.bsky.social
3.4K followers 4.4K following 158 posts

Oncologist | Radiation Oncologist | Opinonated | Atheist | Researcher | Father | ❤️ Statistics, Books & Tech . @santam@fediscience.org @learningonco #RadOnc #MedSky #CanSky #MedTwitter #gyncsm #bcsm #sarcoma #RStats #ClinicalTrials

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Santam Chakraborty @santam.bsky.social · 07/04/2026
We have integrated the awesome OHIF viewer into CHAVI (chavi.ai), allowing users to view DICOM datasets. A short video explaining the method is available here youtu.be/z6b4Ihpub8U?... CHAVI is India's first publicly available oncology image bank available for the global research community.
chavi.ai
CHAVI - The first Oncology Image Bank of India
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Santam Chakraborty @santam.bsky.social · 21/03/2026
Excited to announce the availability of the COntour METrics (COMET) app to help users with limited coding knowledge to compute spatial overlap metrics from pairs of contours and STAPLE contours from a set of expert contours. Released under the APACHE-2.0 licence. github.com/CHAVI-India/...
github.com
GitHub - CHAVI-India/COMET: This is a repository to host the Contour Metrics (COMET) application for computing spatial overlap metrics for segmentations
This is a repository to host the Contour Metrics (COMET) application for computing spatial overlap metrics for segmentations - CHAVI-India/COMET
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Santam Chakraborty @santam.bsky.social · 06/10/2025
Back here after a long time. Happy to report that our new electronic patient reported outcome #EPROM #HRQOL system is #opensourced and available here. github.com/CHAVI-India/.... This is free to use and we welcome users especially from #LMIC.
github.com
GitHub - CHAVI-India/SATHI: Patient Reported Outcome System
Patient Reported Outcome System. Contribute to CHAVI-India/SATHI development by creating an account on GitHub.
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Santam Chakraborty @santam.bsky.social · 24/11/2024
+1 for #medsky labeller.
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Tom Saunders @tomsaunders.me · 24/11/2024
Want to dip your toe into #programming? This free 6 hour intro to #Rstats online curriculum is a great entry point and we get good feedback when teaching it to researchers. Don't worry about the 'for ecologists' bit, that's just the flavour of dataset. #academicsky #research #science
datacarpentry.github.io
Data Analysis and Visualization in R for Ecologists: Summary and Setup
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Santam Chakraborty @santam.bsky.social · 24/11/2024
I finished my conference presentation for #AROICON2024 exactly 1 week before the 📅 !
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Santam Chakraborty @santam.bsky.social · 24/11/2024
#RStats folks please share your favourite resources for jazzing up your #quarto #revealjs presentations.
media.tenor.com
a man stands in front of a white board that says " give it to me please "
Alt: a man stands in front of a white board that says " give it to me please "
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Santam Chakraborty @santam.bsky.social · 24/11/2024
I wonder if they would have invented cooking if they had been evolved to live on land instead of water. www.popsci.com/dolphins-thr... #dolphins #octopus #MarineSky
popsci.com
Dolphins beat up octopuses before eating them, and the reason is kind of horrifying
In general, it’s best for your food to not kill you. Dolphins agree, which is why they thrash their octopus around a bit before they chow down. Read on:
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Devlyn Angel, ETQ 😈😇 @devlynangel.bsky.social · 23/11/2024
This is the latest list of people with less than 1000 followers. It's been updated since yesterday to include everyone that asked. Please follow all and keep strengthen our community! There's still some room if you have less than 1000 followers and would like to be added 💙💙💙 go.bsky.app/RXHjDai
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Beautiful explanation of why using bar plots for representing summary stats is a bad idea.
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Santam Chakraborty @santam.bsky.social · 23/11/2024
interesting research on using LLMs for guiding #bcsm #BreastCancer #EBRT #radonc decision-making for three types of cases for breast radiotherapy. Not surprised that these "stochastic parrots" don't know what they are spewing out. www.medrxiv.org/content/10.1101/202…
medrxiv.org
Large Language Models Fail to Reproduce Level I Recommendations for Breast Radiotherapy | medRxiv
This study evaluates the reliability of the largest public-facing large language models in providing accurate breast cancer radiotherapy recommendations. We assessed ChatGPT 3.5, ChatGPT 4, ChatGPT 4o, Claude 3.5 Sonnet, and ChatGPT o1 in three common clinical scenarios. The clinical cases are as follows: post-lumpectomy radiotherapy in a 40 year old woman, (2) postmastectomy radiation in a 40 year old woman with 4+ lymph nodes, and (3) postmastectomy radiation in an 80 year old woman with early stage tumor and negative axillary dissection. Each case was designed to be unambiguous with respect to the Level I evidence and clinical guideline-supported approach. The evidence-supported radiation treatments are as follows: (1) Whole breast with boost (2) Regional nodal irradiation (3) Omission of post-operative radiotherapy. Each prompt is presented to each LLM multiple times to ensure reproducibility. Results indicate that the free, public-facing models often fail to provide accurate treatment recommendations, particularly when omission of radiotherapy was the correct course of action. Many recommendations suggested by the LLMs increase morbidity and mortality in patients. Models only accessible through paid subscription (ChatGPT o1 and o1-mini) demonstrated greatly improved accuracy. Some prompt-engineering techniques, rewording and chain-of-reasoning, enhanced the accuracy of the LLMs, while true/false questioning significantly worsened results. While public-facing LLMs show potential for medical applications, their current reliability is unsuitable for clinical decision-making. ### Competing Interest Statement The authors have declared no competing interest. ### Funding Statement This study did not receive any funding ### Author Declarations I confirm all relevant ethical guidelines have been followed, and any necessary IRB and/or ethics committee approvals have been obtained. Yes I confirm that all necessary patient/participant consent has been obtained and the appropriate institutional forms have been archived, and that any patient/participant/sample identifiers included were not known to anyone (e.g., hospital staff, patients or participants themselves) outside the research group so cannot be used to identify individuals. Yes I understand that all clinical trials and any other prospective interventional studies must be registered with an ICMJE-approved registry, such as ClinicalTrials.gov. I confirm that any such study reported in the manuscript has been registered and the trial registration ID is provided (note: if posting a prospective study registered retrospectively, please provide a statement in the trial ID field explaining why the study was not registered in advance). Yes I have followed all appropriate research reporting guidelines, such as any relevant EQUATOR Network research reporting checklist(s) and other pertinent material, if applicable. Yes All data produced in the present work are contained in the manuscript
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Santam Chakraborty @santam.bsky.social · 23/11/2024
This is important people. I had used it over firefox since the past year .
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Su-In Lee @suinlee.bsky.social · 23/11/2024
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!
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Johanna Joyce @johannajoyce.bsky.social · 23/11/2024
Both #Cancer #Research starter packs are now completely full! ~300 researchers, oncologists, students, postdocs, patient advocates, and organizations supporting cancer research 🧪🔬⚕️ I hope you'll find these useful to build our community here Pack 1: go.bsky.app/FEoaJMc Pack 2: go.bsky.app/6EcjWNA
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Some additional accounts added to Isocenter starter pack. Please message / like / repost / reply so I can add you. This is meant to be a general list of professionals of #radonc #ClinOnc #medphys #radther #rmeddosim #brachytherapy #EBRT #IGRT #IMRT #IORT #ProtonRT #SBRT #StereoRT go.bsky.app/9dMTnSr
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Mike Thompson, MD, PhD, FASCO @mtmdphd.bsky.social · 18/11/2024
Radiation Oncology Tag Ontology [RTO]: Collaborative Design Integrating Hashtags Across Cancer Care [May 23, 2019] Matthew S. Katz, MD @subatomicdoc in @symplur blog ow.ly/9nNG30oOtaY #RadOntPro #radonc
ow.ly
Radiation Oncology Tag Ontology: Collaborative Design Integrating Hashtags Across Cancer Care
In the five years since the patient-centered Cancer Tag Ontology (CTO) came into being, conversations about cancer on Twitter continue to grow. The
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Tyler Seibert MD PhD @tylersbrt.bsky.social · 22/11/2024
🚨🚨Prostate and UREthra on MRI (PURE-MRI): Try to contour (outline) the prostate and urethra on MRI for 1 patient After everyone is done, we will enable the “answer key” And you help us learn how to help doctors and AI do better Sign up here: redcap.link/PURE-MRI 🙏🏼
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Why are people surprised / shocked by this. The whole purpose of a for profit insurance company is to generate profits for its shareholders. Denying claims is the only way to maximize profitability. Its is absolutely bonkers that we think private insurance will somehow be "fair".
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Santam Chakraborty @santam.bsky.social · 23/11/2024
If you are looking to get started with #MedSky #CanSky #Medicine #Healthcare related accounts to follow.
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Kyle Swanson, MD, FAANS, FCNS @kiswanson.medsky.network · 19/11/2024
Looking for medical professionals to follow? Just added the 6th installment *Medsky Sanguine Six* #medsky 🩺🧪 Round 1 go.bsky.app/Qg2TA9p Round 2 go.bsky.app/9ziyYqt Round 3 go.bsky.app/9WQtZh6 Round 4 go.bsky.app/HRaNhEt Round 5 go.bsky.app/DvGjDh6 Round 6 go.bsky.app/TzRhec3
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Santam Chakraborty @santam.bsky.social · 23/11/2024
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Santam Chakraborty @santam.bsky.social · 20/11/2024
There is no better example of a failed healthcare system driven by profit. sadly it is the role model for many countries especially #India
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Dr. Richard Pan @drpanmd.bsky.social · 19/11/2024
Thrilled to join so many child & public health advocates on #BlueSky. It is a tragedy that the variation in life expectancy at birth by census tract in the U.s. spans 40 years and the U.S. life expectancy lags other developed countries. #publichealth
Life Expectancy at Birth for U.S. Census Tracts, 2010-2015
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BK. Titanji @boghuma.bsky.social · 20/11/2024
I can't find African Scientists and researchers easily on here. As the second largest continent with 1.3 billion inhabitants our perspectives matter. I'm creating a starterpack to find folks, follow them and amplify them. If you are an African Scientist let me know below so I can add you. Thanks.
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Santam Chakraborty @santam.bsky.social · 19/11/2024
Question for #visualization #Rstats #ggolot2 folks what is the best visualization that can be used to show differences in proportion of grades (ordinal 4 levels) of toxicity reported by patients and clinicians ?
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Fionna O’Leary @fascinatorfun.bsky.social · 18/11/2024
Huge cohort A total of 11,010,764 births before & 7,060,626 births during the pandemic were analysed. The number of births with a congenital heart condition increased from 56.5 per 100k births pre pandemic to 65.4 per 100k births after pandemic year 1 - a 16% increase.
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democracyfreedom.bsky.social @democracyfreedom.bsky.social · 17/11/2024
"Male heat treatmebt contraception" hot tubs. Hot baths. The potential of mild testicular heating as a safe, effective and reversible contraceptive method for men. Ancient Greece had hot baths for a reason. pubmed.ncbi.nlm.nih.gov/7995654/
pubmed.ncbi.nlm.nih.gov
The potential of mild testicular heating as a safe, effective and reversible contraceptive method for men - PubMed
A preliminary assessment of the contraceptive efficacy of a daily mild increase (1-2 degrees C) in testicular temperature during waking hours is reported in nine couples using two techniques of non-su...
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Santam Chakraborty @santam.bsky.social · 18/11/2024
Ok this is niche but if you are looking for a QR Code generator and are modestly adept at #RStats then there is a package for that thierryo.github.io/qrcode/ . Works very well with #posterdown package to create better posters.
thierryo.github.io
Generate QRcodes with R
Create static QR codes in R. The content of the QR code is exactly what the user defines. We don't add a redirect URL, making it impossible for us to track the usage of the QR code. This allows to gen...
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Kellie Machlus @kmachlus.bsky.social · 17/11/2024
Finally- the starter pack we have all been waiting for is here … Hematopoiesis 🎉❤️🩸🦴 So excited to have reached a critical mass of this community on here. 🙌🏻 Let me know if you want to be added!! go.bsky.app/KWdX5w7
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Santam Chakraborty @santam.bsky.social · 17/11/2024
I have started putting together a starter pack of #RadOnc #MedicalPhysics #RadiationTherapist #Dosimetrist and allied professionals. Please join. go.bsky.app/9dMTnSr
go.bsky.app
Isocentre
Join the conversation
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Santam Chakraborty @santam.bsky.social · 17/11/2024
Today's #RStat learning ! Using rowwise to get minimum/maximum values across several columns. #tidyverse
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Santam Chakraborty @santam.bsky.social · 17/11/2024
Let's get this done #MedSky
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Santam Chakraborty @santam.bsky.social · 17/11/2024
It feels extra nice when you realise your publication being refenced in a sytematic review is the only one from your country. But it is also worrisome as it is on such an important part of #RadOnc #QA. academic.oup.com/bjr/article-...
academic.oup.com
Enhancing quality assurance in radiotherapy for gynaecological cancers: implementation of an on-demand peer review process
AbstractObjectives. Ensuring high-quality radiotherapy requires peer-reviewing target volumes. The Royal College of Radiologists recommends peer review spe
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Santam Chakraborty @santam.bsky.social · 17/11/2024
It is interesting how algorithms curtail or amplify your reach on social media. Here I have more followers than twitter despite not changing my posting patterns. Being on starter packs help but there is no algorithm hiding you arbitrarily helps.
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Santam Chakraborty @santam.bsky.social · 16/11/2024
open.substack.com/pub/donmoynihan/p… If there is a case for increasing the quality of education for the general public it is this. Unless they understand these nuances grifters will always be able to rule over them.
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Ian Davis @profiand.bsky.social · 16/11/2024
GU starter pack… started! Let me know if you want to be added. go.bsky.app/DtoXvaD #Genitourinary #Oncology #GUonc #ProstateCancer #KidneyCancer #Urothelial #BladderCancer #PenileCancer #TesticularCancer #pcsm #kcsm #blcsm #tcsm #Medsky #Medtwitter
Genitourinary oncology starter pack

https://go.bsky.app/DtoXvaD
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Rafael Santana-Davila @valdesan.bsky.social · 16/11/2024
@lizzysmyth.bsky.social added you to this list. Please share and spread the word. go.bsky.app/GKXp9Fy
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Santam Chakraborty @santam.bsky.social · 16/11/2024
I would have signed this if I was in #US . I am very concerned what this will do to Indians with our limited health literacy and sold out media.
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Brooke Jarvis @brookejarvis.bsky.social · 15/11/2024
Today in relatable science: Gulls making a mysterious daily trip that turned out to be to a potato chip factory
A map of flight paths emanating from breeding colony of gulls, with this caption: Early on, LifeWatch noticed something odd. Most gulls were making daily trips to Mouscron, a city on the French border 65 km away. They went to investigate and found the birds bingeing on discarded snacks at the Roger & Roger potato factory.
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Ann Petersen-Kane @anniegirl.bsky.social · 15/11/2024
Just any fyi, if you want to help a mutual get their news, message, or just a cute thing out into the bluesky, reshare them. Hearting them doesn't do this because there is no algorithm here. Get into the habit of reposting to boost others.
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Yani Bellini Saibene @yabellini.bsky.social · 16/11/2024
1/ While waiting for the bus to finally get home, here are My 3 Favorite Newsletters For Learning #RStats RWeekly: rweekly.org What’s new in R? rfortherestofus.com/whatsnew/ And of course @rOpenSci.hachyderm.io.ap.brid.gy monthly newsletter: ropensci.org/news/ Which one are yours favorites?
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Hugo Flávio @hugoflavio.com · 16/11/2024
Me, please! 🙋 I work with aquatic animal tracking and I maintain the #Rstats package actel (for acoustic telemetry data analysis).
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Santam Chakraborty @santam.bsky.social · 16/11/2024
My favourite corner of @bsky.app feeds
Screenshot of feeds list in Bluesky showing StatsSky, Marine Life !,  #rstats and other statistics related feeds.
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Santam Chakraborty @santam.bsky.social · 16/11/2024
Ok! I dont know how many of you read Phantom comics but if you are not you are missing a very interesting storyline involving how the Phantom is going to give Ian Mollusk a hiding along with his company the Space Ox. #Phantom #Comics comicskingdom.com/phantom/2024...
comicskingdom.com
The Phantom Comic Strip 2024-11-13 | Comics Kingdom
Read the The Phantom comic strip from November 13, 2024, and check out other The Phantom comics by T. Depaul, M. Manley & J. Weigel.
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Santam Chakraborty @santam.bsky.social · 16/11/2024
I never thought about how the myths of cryptids could be tied to colonialism and racism. 👇
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Ben Gross @bhgross144.bsky.social · 16/11/2024
Are the skies clear in your neck of the woods? Be sure to go outside and look at the #BeaverSupermoon! (What's a #Supermoon? And what do #beavers have to do w/astronomy? Here's a NASA blog post w/more info: blogs.nasa.gov/Watch_the_Sk...) #histSTM #astronomy 🔭 🗃️📜 #histastro #BeaverMoon 🦫🌕
Engraving of a beaver from Claude Perrault, Description anatomique d'un cameleon, d'un castor, d'un dromadaire, d'un ours, et d'une gazelle (1669), Linda Hall Library: https://catalog.lindahall.org/discovery/delivery/01LINDAHALL_INST:LHL/1291118980005961#page=83Wilhelm Beer and Johann Heinrich Mädler, Mappa selenographica (1834),  Linda Hall Library.

More info: https://www.lindahall.org/experience/digital-exhibitions/the-face-of-the-moon/d-1800-1900/11-beer-wilhelm-and-madler-johann-heinrich/
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Sara Conroy, PhD @episconroy.bsky.social · 15/11/2024
Requesting opinions: “This study followed STROBE reporting guidelines“ seems a little off target. The guidelines aren’t meant to inform the study, but what/how it is reported. It is almost as if this has just become a default sentence to get published. #episky #statsky
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Santam Chakraborty @santam.bsky.social · 15/11/2024
Lots of new people joining in and following me in the past couple of day ! Thanks you all. I am a #RadOnc working in #Kolkata (India). I am interested in #bcsm #gyncsm and #sarcoma. I am also deeply interested in #ClinicalResearch and #Statistics. Proponent of Universal Health Care.
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Alexander Verbeek @alexverbeek.bsky.social · 14/11/2024
If you have any reach on Bluesky, please consider reposting so I can find old and new friends (and then I’ll follow you back 😊). I'm Alexander Verbeek and publish about the climate crisis, environment, the beauty of nature, science, walking, sustainability, wildlife, photography, water, and energy.
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