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Santam Chakraborty

@santam.bsky.social
3.4K followers 4.4K following 158 posts

Oncologist | Radiation Oncologist | Opinonated | Atheist | Researcher | Father | ❤️ Statistics, Books & Tech . @santam@fediscience.org @learningonco #RadOnc #MedSky #CanSky #MedTwitter #gyncsm #bcsm #sarcoma #RStats #ClinicalTrials

PostsRepliesMedia
Santam Chakraborty @santam.bsky.social · 07/04/2026
We have integrated the awesome OHIF viewer into CHAVI (chavi.ai), allowing users to view DICOM datasets. A short video explaining the method is available here youtu.be/z6b4Ihpub8U?... CHAVI is India's first publicly available oncology image bank available for the global research community.
chavi.ai
CHAVI - The first Oncology Image Bank of India
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Santam Chakraborty @santam.bsky.social · 21/03/2026
A short YouTube video is also available youtu.be/UjGWuQtW80I?...
youtu.be
COMET Intro
YouTube video by CHAVI
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Santam Chakraborty @santam.bsky.social · 21/03/2026
Excited to announce the availability of the COntour METrics (COMET) app to help users with limited coding knowledge to compute spatial overlap metrics from pairs of contours and STAPLE contours from a set of expert contours. Released under the APACHE-2.0 licence. github.com/CHAVI-India/...
github.com
GitHub - CHAVI-India/COMET: This is a repository to host the Contour Metrics (COMET) application for computing spatial overlap metrics for segmentations
This is a repository to host the Contour Metrics (COMET) application for computing spatial overlap metrics for segmentations - CHAVI-India/COMET
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Santam Chakraborty @santam.bsky.social · 06/10/2025
We have scheduled a webinar on this. Join here Overview of the SATHI : E-PROM System Sunday, 12 Oct • 11:00 am – 12:30 pm Google Meet joining info Video call link: meet.google.com/sym-aeda-itm
meet.google.com
Meet
Real-time meetings by Google. Using your browser, share your video, desktop, and presentations with teammates and customers.
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Santam Chakraborty @santam.bsky.social · 06/10/2025
Back here after a long time. Happy to report that our new electronic patient reported outcome #EPROM #HRQOL system is #opensourced and available here. github.com/CHAVI-India/.... This is free to use and we welcome users especially from #LMIC.
github.com
GitHub - CHAVI-India/SATHI: Patient Reported Outcome System
Patient Reported Outcome System. Contribute to CHAVI-India/SATHI development by creating an account on GitHub.
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Santam Chakraborty @santam.bsky.social · 03/12/2024
Thanks. Added.
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Santam Chakraborty @santam.bsky.social · 25/11/2024
So far I have essentially copy pasted your code and the result was far superior to anything I could get myself.
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Santam Chakraborty @santam.bsky.social · 25/11/2024
Thanks I am going through it slowly but the color and font sections as well as the scss files have been very useful.
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Santam Chakraborty @santam.bsky.social · 24/11/2024
🎉
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Santam Chakraborty @santam.bsky.social · 24/11/2024
Thanks this helped me to expand my starter pack of #radonc professionals go.bsky.app/9dMTnSr
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Santam Chakraborty @santam.bsky.social · 24/11/2024
+1 for #medsky labeller.
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Santam Chakraborty @santam.bsky.social · 24/11/2024
And I would like to add that prof's site is a treasure trove of knowledge that gives new information everytime I visit it.
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Santam Chakraborty @santam.bsky.social · 24/11/2024
Thanks I did not know about this.
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Reposted by Santam Chakraborty
Tom Saunders @tomsaunders.me · 24/11/2024
Want to dip your toe into #programming? This free 6 hour intro to #Rstats online curriculum is a great entry point and we get good feedback when teaching it to researchers. Don't worry about the 'for ecologists' bit, that's just the flavour of dataset. #academicsky #research #science
datacarpentry.github.io
Data Analysis and Visualization in R for Ecologists: Summary and Setup
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Santam Chakraborty @santam.bsky.social · 24/11/2024
Yes I just came across this 😅
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Santam Chakraborty @santam.bsky.social · 24/11/2024
I finished my conference presentation for #AROICON2024 exactly 1 week before the 📅 !
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Santam Chakraborty @santam.bsky.social · 24/11/2024
Thanks looks great
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Santam Chakraborty @santam.bsky.social · 24/11/2024
Such an important therapeutic option for these patients.
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Santam Chakraborty @santam.bsky.social · 24/11/2024
#RStats folks please share your favourite resources for jazzing up your #quarto #revealjs presentations.
media.tenor.com
a man stands in front of a white board that says " give it to me please "
Alt: a man stands in front of a white board that says " give it to me please "
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Santam Chakraborty @santam.bsky.social · 24/11/2024
I wonder if they would have invented cooking if they had been evolved to live on land instead of water. www.popsci.com/dolphins-thr... #dolphins #octopus #MarineSky
popsci.com
Dolphins beat up octopuses before eating them, and the reason is kind of horrifying
In general, it’s best for your food to not kill you. Dolphins agree, which is why they thrash their octopus around a bit before they chow down. Read on:
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Reposted by Santam Chakraborty
Devlyn Angel, ETQ 😈😇 @devlynangel.bsky.social · 23/11/2024
This is the latest list of people with less than 1000 followers. It's been updated since yesterday to include everyone that asked. Please follow all and keep strengthen our community! There's still some room if you have less than 1000 followers and would like to be added 💙💙💙 go.bsky.app/RXHjDai
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Beautiful explanation of why using bar plots for representing summary stats is a bad idea.
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Santam Chakraborty @santam.bsky.social · 23/11/2024
interesting research on using LLMs for guiding #bcsm #BreastCancer #EBRT #radonc decision-making for three types of cases for breast radiotherapy. Not surprised that these "stochastic parrots" don't know what they are spewing out. www.medrxiv.org/content/10.1101/202…
medrxiv.org
Large Language Models Fail to Reproduce Level I Recommendations for Breast Radiotherapy | medRxiv
This study evaluates the reliability of the largest public-facing large language models in providing accurate breast cancer radiotherapy recommendations. We assessed ChatGPT 3.5, ChatGPT 4, ChatGPT 4o, Claude 3.5 Sonnet, and ChatGPT o1 in three common clinical scenarios. The clinical cases are as follows: post-lumpectomy radiotherapy in a 40 year old woman, (2) postmastectomy radiation in a 40 year old woman with 4+ lymph nodes, and (3) postmastectomy radiation in an 80 year old woman with early stage tumor and negative axillary dissection. Each case was designed to be unambiguous with respect to the Level I evidence and clinical guideline-supported approach. The evidence-supported radiation treatments are as follows: (1) Whole breast with boost (2) Regional nodal irradiation (3) Omission of post-operative radiotherapy. Each prompt is presented to each LLM multiple times to ensure reproducibility. Results indicate that the free, public-facing models often fail to provide accurate treatment recommendations, particularly when omission of radiotherapy was the correct course of action. Many recommendations suggested by the LLMs increase morbidity and mortality in patients. Models only accessible through paid subscription (ChatGPT o1 and o1-mini) demonstrated greatly improved accuracy. Some prompt-engineering techniques, rewording and chain-of-reasoning, enhanced the accuracy of the LLMs, while true/false questioning significantly worsened results. While public-facing LLMs show potential for medical applications, their current reliability is unsuitable for clinical decision-making. ### Competing Interest Statement The authors have declared no competing interest. ### Funding Statement This study did not receive any funding ### Author Declarations I confirm all relevant ethical guidelines have been followed, and any necessary IRB and/or ethics committee approvals have been obtained. Yes I confirm that all necessary patient/participant consent has been obtained and the appropriate institutional forms have been archived, and that any patient/participant/sample identifiers included were not known to anyone (e.g., hospital staff, patients or participants themselves) outside the research group so cannot be used to identify individuals. Yes I understand that all clinical trials and any other prospective interventional studies must be registered with an ICMJE-approved registry, such as ClinicalTrials.gov. I confirm that any such study reported in the manuscript has been registered and the trial registration ID is provided (note: if posting a prospective study registered retrospectively, please provide a statement in the trial ID field explaining why the study was not registered in advance). Yes I have followed all appropriate research reporting guidelines, such as any relevant EQUATOR Network research reporting checklist(s) and other pertinent material, if applicable. Yes All data produced in the present work are contained in the manuscript
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Thanks this is very useful.
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Is the methodology to grow the cells proprietary? Is this something another lab can think of investing funds in replicating?
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Can we use this to see the effect of radiation therapy also ? Particularly low dose radiation (<100 cGy) as a sensitizer for other drugs ?
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Welcome 🤗
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Santam Chakraborty @santam.bsky.social · 23/11/2024
This is important people. I had used it over firefox since the past year .
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Santam Chakraborty @santam.bsky.social · 23/11/2024
📌
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Su-In Lee @suinlee.bsky.social · 23/11/2024
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Yes although the sign clearly says CPAP. Why is this happening 😭
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Santam Chakraborty @santam.bsky.social · 23/11/2024
All accounts followed
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Johanna Joyce @johannajoyce.bsky.social · 23/11/2024
Both #Cancer #Research starter packs are now completely full! ~300 researchers, oncologists, students, postdocs, patient advocates, and organizations supporting cancer research 🧪🔬⚕️ I hope you'll find these useful to build our community here Pack 1: go.bsky.app/FEoaJMc Pack 2: go.bsky.app/6EcjWNA
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Some additional accounts added to Isocenter starter pack. Please message / like / repost / reply so I can add you. This is meant to be a general list of professionals of #radonc #ClinOnc #medphys #radther #rmeddosim #brachytherapy #EBRT #IGRT #IMRT #IORT #ProtonRT #SBRT #StereoRT go.bsky.app/9dMTnSr
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Mike Thompson, MD, PhD, FASCO @mtmdphd.bsky.social · 18/11/2024
Radiation Oncology Tag Ontology [RTO]: Collaborative Design Integrating Hashtags Across Cancer Care [May 23, 2019] Matthew S. Katz, MD @subatomicdoc in @symplur blog ow.ly/9nNG30oOtaY #RadOntPro #radonc
ow.ly
Radiation Oncology Tag Ontology: Collaborative Design Integrating Hashtags Across Cancer Care
In the five years since the patient-centered Cancer Tag Ontology (CTO) came into being, conversations about cancer on Twitter continue to grow. The
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Reposted by Santam Chakraborty
Tyler Seibert MD PhD @tylersbrt.bsky.social · 22/11/2024
🚨🚨Prostate and UREthra on MRI (PURE-MRI): Try to contour (outline) the prostate and urethra on MRI for 1 patient After everyone is done, we will enable the “answer key” And you help us learn how to help doctors and AI do better Sign up here: redcap.link/PURE-MRI 🙏🏼
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Santam Chakraborty @santam.bsky.social · 23/11/2024
Why are people surprised / shocked by this. The whole purpose of a for profit insurance company is to generate profits for its shareholders. Denying claims is the only way to maximize profitability. Its is absolutely bonkers that we think private insurance will somehow be "fair".
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Santam Chakraborty @santam.bsky.social · 23/11/2024
If you are looking to get started with #MedSky #CanSky #Medicine #Healthcare related accounts to follow.
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Kyle Swanson, MD, FAANS, FCNS @kiswanson.medsky.network · 19/11/2024
Looking for medical professionals to follow? Just added the 6th installment *Medsky Sanguine Six* #medsky 🩺🧪 Round 1 go.bsky.app/Qg2TA9p Round 2 go.bsky.app/9ziyYqt Round 3 go.bsky.app/9WQtZh6 Round 4 go.bsky.app/HRaNhEt Round 5 go.bsky.app/DvGjDh6 Round 6 go.bsky.app/TzRhec3
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Santam Chakraborty @santam.bsky.social · 23/11/2024
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Santam Chakraborty @santam.bsky.social · 23/11/2024
That is actually a better way (version C) and much more understandable at the cost of adding one extra +. Thanks. Did not know this was possible.
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Santam Chakraborty @santam.bsky.social · 22/11/2024
What Overall survival is being targeted?
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Santam Chakraborty @santam.bsky.social · 20/11/2024
There is no better example of a failed healthcare system driven by profit. sadly it is the role model for many countries especially #India
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Reposted by Santam Chakraborty
Dr. Richard Pan @drpanmd.bsky.social · 19/11/2024
Thrilled to join so many child & public health advocates on #BlueSky. It is a tragedy that the variation in life expectancy at birth by census tract in the U.s. spans 40 years and the U.S. life expectancy lags other developed countries. #publichealth
Life Expectancy at Birth for U.S. Census Tracts, 2010-2015
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Santam Chakraborty @santam.bsky.social · 20/11/2024
📌
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BK. Titanji @boghuma.bsky.social · 20/11/2024
I can't find African Scientists and researchers easily on here. As the second largest continent with 1.3 billion inhabitants our perspectives matter. I'm creating a starterpack to find folks, follow them and amplify them. If you are an African Scientist let me know below so I can add you. Thanks.
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Santam Chakraborty @santam.bsky.social · 19/11/2024
Question for #visualization #Rstats #ggolot2 folks what is the best visualization that can be used to show differences in proportion of grades (ordinal 4 levels) of toxicity reported by patients and clinicians ?
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Fionna O’Leary @fascinatorfun.bsky.social · 18/11/2024
Huge cohort A total of 11,010,764 births before & 7,060,626 births during the pandemic were analysed. The number of births with a congenital heart condition increased from 56.5 per 100k births pre pandemic to 65.4 per 100k births after pandemic year 1 - a 16% increase.
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democracyfreedom.bsky.social @democracyfreedom.bsky.social · 17/11/2024
"Male heat treatmebt contraception" hot tubs. Hot baths. The potential of mild testicular heating as a safe, effective and reversible contraceptive method for men. Ancient Greece had hot baths for a reason. pubmed.ncbi.nlm.nih.gov/7995654/
pubmed.ncbi.nlm.nih.gov
The potential of mild testicular heating as a safe, effective and reversible contraceptive method for men - PubMed
A preliminary assessment of the contraceptive efficacy of a daily mild increase (1-2 degrees C) in testicular temperature during waking hours is reported in nine couples using two techniques of non-su...
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