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Sam Aytekin

@samaytekin.bsky.social
50 followers 68 following 31 posts

🎓 PhD @KULeuven | Mechanobiology & Microscopy 🧬 Measuring what the cells feel at home 🔬 Molecular Tension Probes • DNA Force Sensors • Biomimetic Hydrogels • TFM • STED

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Sam Aytekin @samaytekin.bsky.social · 29/03/2026
🔬New preprint out! In this study, we systematically compare FRET-based tension sensors to understand how sensor design and measurement modality shape the FRET readout, and how this impacts the resolution of molecular tension measurements in cells. Enjoy the read! www.biorxiv.org/content/10.6...
biorxiv.org
From Sensor Design to Force Maps: A Systematic Evaluation of FRET-based Vinculin Tension Sensors
Mechanical forces transmitted through focal adhesions regulate cell behavior and disease progression, yet remain difficult to quantify at the molecular level. Genetically encoded FRET-based tension probes enable measurements of piconewton-scale forces across specific proteins in living cells, but their quantitative interpretation is highly sensitive to probe design and measurement modality. Here, we systematically compared vinculin tension sensors under identical experimental conditions, evaluating unloaded reference constructs, fluorophore pairs, mechanical sensor modules, and circularly permuted variants. Unloaded controls established a common no-force baseline and validated force-dependent readout. Among the fluorophore pairs tested, the green-red combination Clover-mScarlet-I yielded a higher unloaded FRET efficiency and hence a broader measurable dynamic range. Comparison of six mechanical sensor modules identified the binary-response sensors FL and CC-S2 as the most responsive, showing the largest force-dependent FRET changes and broadest FRET distributions. At the sub-focal adhesion level, CC-S2 reported the steepest proximal-to-distal tension gradient, indicating that vinculin tension increases sharply along peripheral adhesions and exceeds 10 piconewton. Circular permutation experiments revealed that fluorophore orientation has a strong, module-dependent influence on the measured FRET readout. Together, these results establish a comparative framework for interpreting FLIM-based vinculin tension measurements and provide practical design principles for selecting and engineering molecular tension probes. ### Competing Interest Statement The authors have declared no competing interest. Research Foundation - Flanders, https://ror.org/03qtxy027, G0C2422N, G0A8L24N, G0B9922N, 1S95125N KU Leuven, C14/22/085
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Sam Aytekin @samaytekin.bsky.social · 11/02/2026
Check out the latest development for DNA-PAINT technology, from none other than the leading Jungmann(s). Such an exciting field!
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Isaac Li @isaacli.bsky.social · 12/01/2026
Our latest work on directional DNA hairpin 🧬 unzipping and mechanical anisotropy is out! Same sequence, different mechanical properties! By sequence design we can turn a classic two state folder into a soft, compliant molecule 🧸 that visit a stable transient ensemble! Have fun with the box!📦
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Sam Aytekin @samaytekin.bsky.social · 23/10/2025
Mark your calendars! Mechanobiology event of the year is around the corner. Can’t wait to return to beautiful Barcelona and reconnect with my old colleagues from IBEC.
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Sam Aytekin @samaytekin.bsky.social · 06/10/2025
Garcia Lab did it again! Such a fantastic read if you are interested in FAs mechanics and biology. Congratulations to @garcialabgt.bsky.social
science.org
Mechanochemical waves in focal adhesions during cell migration
Traction force and FAK signaling exhibit oscillatory temporal coupling in adhesive structures.
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Rocha Lab @rochalab.bsky.social · 03/10/2025
Still buzzing after the @cellmech2025.bsky.social conference in Leuven! It was great to connect with so many experts in mechanobiology and to be part of this close, dynamic community. We enjoyed the inspiring talks and left with plenty of new ideas.💡 Already looking forward to the next edition!
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Pere Roca-Cusachs @pcusachs.bsky.social · 01/04/2025
Interested in how cells respond when squeezed? Check the review paper just published by Laura Faure, @valeriaventurini.bsky.social and myself on this. Really thorough and clear revision by Laura and Valeria!
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Sam Aytekin @samaytekin.bsky.social · 01/10/2025
Always an honor to hear @johannaivaska.bsky.social share her insights, this time on how composite ECM components influence cell behavior, and how fibronectin-dense regions affect (or not) YAP/Oct-1 localization. An inspiring talk from an inspiring scientist. @cellmech2025.bsky.social.
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Sam Aytekin @samaytekin.bsky.social · 30/09/2025
Great experience presenting my work at @cellmech2025.bsky.social, where I shared how TFM and FRET sensors reveal the relationship between cellular tractions and focal adhesion tension. Sacrificed the food and drinks, but the (rather intense) discussions made up for it 💪🏻
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Sam Aytekin @samaytekin.bsky.social · 30/09/2025
Exciting week ahead! @cellmech2025.bsky.social is looking truly incredible and we are happy to be here as @rochalab.bsky.social. Let’s share some quality science! 🔬
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Sara Wickstrom @sarawickstrom.bsky.social · 29/09/2025
How do #stemcells integrate information to coordinate fate decisions? Delighted to finally see our work showing how growth factors regulate the mechano-osmotic state of the #nucleus and #chromatin to control #pluripotency exit out! www.nature.com/articles/s41... see 🧵 👇
nature.com
Mechano-osmotic signals control chromatin state and fate transitions in pluripotent stem cells - Nature Cell Biology
McCreery, Stubb et al. show that mechano-osmotic changes in the nucleus induce general transcriptional repression and prime chromatin for cell fate transitions by relieving repression of specific differentiation genes.
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Sara Wickstrom @sarawickstrom.bsky.social · 07/08/2025
Very happy to see our preprint on how the mechanosensitive ion channel Piezo1 controls intercellular junction maturation by balancing cortex and membrane tension now published in @jcellsci.bsky.social Congratulations to Ahsan & team! journals.biologists.com/jcs/article/...
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Sam Aytekin @samaytekin.bsky.social · 22/07/2025
Huge respect for this technically wild study from the Oakes lab👏 Combining laser ablation, TFM, vinculin tension probes, optogenetics and FRAP, they show that the recruitment of zyxin & paxillin, but not of vinculin and its tension, correlate with local tension changes. Interesting and challenging!
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Xavier Trepat @xaviertrepat.bsky.social · 30/06/2025
How to turn a layer of fibroblasts into a tulip 🌷? Check out our new pre-print on shape-programmable living surfaces. Led by @pauguillamat.bsky.social‬ www.biorxiv.org/content/10.1...
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Sam Aytekin @samaytekin.bsky.social · 26/06/2025
One major drawback of DNA force sensors is their super short lifetime—making them rather unsuitable for most bio studies. Huge congrats (and thanks) to isaacli.bsky.social’s team for solving one more problem for the field! Looks like it’s time to image some integrin forces 😎
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Cecilia Zaza @ceciliazaza.bsky.social · 30/05/2025
Can we break past the usual limits of #SuperResolution #Microscopy—achieving deep-imaging, high-res, large FOV imaging without the trade-offs? 🧬🔬 YES: with #DNA_PAINT + Spinning Disk Confocal + Optical Photon Reassignment (#SDC-OPR)! 📄 www.nature.com/articles/s41... @natcomms.nature.com! 🧵👇
nature.com
Super-resolution imaging in whole cells and tissues via DNA-PAINT on a spinning disk confocal with optical photon reassignment - Nature Communications
Zaza and colleagues demonstrate that DNA-PAINT on a spinning disk confocal microscope with optical photon reassignment enables high-resolution imaging across large fields and imaging depths, resolving...
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Sam Aytekin @samaytekin.bsky.social · 07/06/2025
Hydrogels are essential in mechanobiology—and PIC is a game changer. Fully synthetic yet highly biomimetic, PIC opens new possibilities for 3D cell culture applications. Congrats to Hongbo Yuan, Kouwer Lab, and rochalab.bsky.social on this detailed Nature Protocols guide! 👏📜
nature.com
Fibrous polyisocyanide hydrogels for 3D cell culture applications - Nature Protocols
Methods to use polyisocyanide as a model matrix for 3D cell culture. Polyisocyanide gels closely mimic the physical properties of biogels such as collagen and fibrin and, as fully synthetic materials,...
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Jelle Hendrix @profjelle.bsky.social · 29/05/2025
Me: I see lines in my 🔬 confocal images! 💊 Doctor: please read this paper! doi.org/10.1016/j.bb...
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Sam Aytekin @samaytekin.bsky.social · 25/05/2025
This months #GRC on Fibronectin, Integrins and Related Molecules 🔬was a reminder of how powerful in-person science can be. Lots of unpublished research, discussions and brainstorming; making friends and making collaborators too. GRC is a unique experience and I’m still processing it all!
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Ben Goult @bengoult.bsky.social · 23/05/2025
Registration is now open, come join us in beautiful Zadar (Croatia) in September for Adhere2. event.fourwaves.com/adhere2/pages
event.fourwaves.com
2nd International Conference Focused on Cell Adhesion - ADHERE 2
Fourwaves - 2nd International Conference Focused on Cell Adhesion - ADHERE 2
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Ben Goult @bengoult.bsky.social · 23/05/2025
The GRC on Fibronectin, Integrins and Related Molecules earlier this month was a fantastic meeting. Good work @tanentzapflab.bsky.social and @sarawickstrom.bsky.social for organising. www.grc.org/fibronectin-...
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Sam Aytekin @samaytekin.bsky.social · 25/05/2025
Such a well deserved award. Congratulations to @johannaivaska.bsky.social and her fantastic team 👏🏻👏🏻👏🏻
utu.fi
Finnish Science Award to Professor Johanna Ivaska
The Finnish Science Award 2025 has been awarded to Johanna Ivaska, Professor of Molecular Cell Biology at the University of Turku.
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Carsten Schulte @carstenschulte4.bsky.social · 18/05/2025
Very important publication highlighting the need for more realistic cell culture disease models that recapitulate better (patho)physiological conditions.
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Michal Dibus @midibu.bsky.social · 09/05/2025
Happy to share our Tensin 1 phase separation project is now on bioRxiv. www.biorxiv.org/content/10.1... This wouldn't be possible without @johannaivaska.bsky.social @ivaskalab.bsky.social #VattulainenLab #MSCA by @ec.europa.eu @turkubioscience.bsky.social @inflames-flagship.bsky.social
biorxiv.org
Adhesion-derived condensates control component availability to regulate adhesion dynamics
Integrin adhesion complexes mediate cell-extracellular matrix (ECM) interactions and undergo dynamic remodelling to regulate cell adhesion and migration. Here, we demonstrate that tensin 1 (TNS1), a m...
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Sam Aytekin @samaytekin.bsky.social · 07/05/2025
What a view for science! ☀️⛰️ #GRC on #Fibronectin, #Integrins and Related Molecules is going strong in Renaissance Tuscany Il Ciocco with a beautiful backdrop. I am happy to share my work on focal adhesion mechanics in my first-time Gordon conference with the brightest minds in the field. 🔬
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Sam Aytekin @samaytekin.bsky.social · 02/05/2025
We did it! 🧪 After years of fiddling with gels, lasers, cells, and infinite lines of custom codes, our first preprint is out! We integrated TFM & FRET-based tension probes into one workflow to zoom in on focal adhesions mechanics 🔬 Already 400 downloads and I’m only mildly panicking 😅
biorxiv.org
Linking Molecular Tension and Cellular Tractions: A Multiscale Approach to Focal Adhesion Mechanics
Focal adhesions (FAs) are mechanosensitive structures that mediate force transmission between cells and the extracellular matrix. While Traction Force Microscopy (TFM) quantifies cellular tractions ex...
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CellMech2025 @cellmech2025.bsky.social · 04/03/2025
🌞 Today, the old Cloth Hall is the university’s policy center. ☕ Inside you can visit a tiny museum, a university shop and a coffee bar. It is still the central place of enrollment, and one of its halls is still regularly used for public PhD defenses and amazing conferences like CELLMECH!! (5/5)
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Sam Aytekin @samaytekin.bsky.social · 01/05/2025
@oozguc.bsky.social has many talents—science, art, and making the rest of us jealous, just to name a few. That Cell-estial Bloom image is simply stunning. Truly congratulations!
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Sam Aytekin @samaytekin.bsky.social · 01/05/2025
DNA-PAINT based tension probes (while being extremely challenging) has seen remarkable advances in the last decade, with the latest being the qtPAINT, allowing force quantification at super-resolution! Check out the new publication from Li Lab @UBC. Congratulations!
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Sam Aytekin @samaytekin.bsky.social · 01/05/2025
What an incredible line-up of speakers! Can't be more excited to finally be a part of GRC on Fibronectin, Integrins and Related Molecules. Just two more days to go!
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Sam Aytekin @samaytekin.bsky.social · 01/05/2025
Why do the same nanoparticles behave differently across tumors? The latest study from @rochalab.bsky.social reveals the tumor-biology and the proteomic profiles alter NP uptake and diffusion—changing the standard pipeline in cancer nanomedicine. Congratulations to my colleagues and lunch-mates! 👏
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