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Afra Salazar

@salazarafra.bsky.social
202 followers 225 following 19 posts

PhD student in microbial ecology and evolution at the University of Lausanne salazarafra.github.io | Literary fiction, philosophy & cinema

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Reposted by Afra Salazar
Mark Bitter @markcbitter.bsky.social · 01/10/2026
New Perspective w/ @petrovadmitri.bsky.social and Paul Schmidt! We ask what evolution-in-action studies tell us about an old question: what genetic variation matters for fitness, and what maintains it? ecoevorxiv.org/repository/v...
ecoevorxiv.org
Common, consequential, and actively maintained: a neo-balance view of genetic variation
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Alejandro Fábregas-Tejeda @alejandrofabregastejeda.com · 30/09/2026
Have you been thinking about the main challenges or theoretical frameworks of #ALife? Do you want to discuss the current directions & future prospects of the field? Then come to Leuven & join us in a great interdisciplinary environment open to both scientists & philosophers #philsky #MolBiol #HPS 🧪
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Craig MacLean @craigmaclean.bsky.social · 30/09/2026
Postdoc position available in my group to work on ERC funded project on evolutionary biology of antibiotic resistance. Looking for someone with expertise in bacterial genetics, AMR, and evolutionary biology. www.jobs.ac.uk/job/DSZ416/p...
jobs.ac.uk
Postdoctoral Research Associate at University of Oxford
Explore an exciting academic career as a Postdoctoral Research Associate. Don't miss out on other academic jobs. Click to apply and explore more opportunities.
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Will Ratcliff @wcratcliff.bsky.social · 28/09/2026
New paper out with @kaylastoy.bsky.social: academic.oup.com/evlett/advan...
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Maria Rebolleda-Gomez @mrebolleda.bsky.social · 28/09/2026
"I believe that science derives its authority from something more than mastering the pipeline from data generation to publication. Rather, it comes from interactions within a community of people trained to interrogate evidence and answer for the conclusions they draw from it."
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EvoBio Crash Course @evobiocc.bsky.social · 23/09/2026
The Evobio Crash Course is coming back for its fifth edition! Join us from December 7 to December 18 for an incredible line up of classes and tutorials from amazing researchers in the field! The course is open to all, completely free and held online. Registration is OPEN, please share widely!
Poster for the Evobio Crash Course. Online from December 7-18, 2026.
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Chuliang Song @clsong.com · 21/09/2026
My PhD advisor Serguei Saavedra has assembled an amazing Editorial to launch a new free-to-read, free-to-publish journal in ecology!
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Instituto de Investigaciones Filosóficas @iifsunam.bsky.social · 19/09/2026
CONVOCATORIA Proceso de selección 3 plazas de investigación @iifsunam.bsky.social Epistemología, Filosofía del lenguaje, Filosofía de la mente, Lógica y filosofía de la lógica, Metafísica Límite para envíos (deadline): 30/Oct/2026 📬concursos.iifs@gmail.com filosoficas.unam.mx/sitio/convoc...
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Willem van Schaik @wvschaik.bsky.social · 20/09/2026
Brilliant paper by the labs of @epcrocha.bsky.social @jrpenades.bsky.social 'Mobile genetic elements drive a plasmid fusion and deletion lifecycle shaping evolution and antimicrobial resistance' www.nature.com/articles/s41...
nature.com
Mobile genetic elements drive a plasmid fusion and deletion lifecycle shaping evolution and antimicrobial resistance - Nature Communications
Plasmids drive bacterial adaptation, but how their diversity arises has remained unclear. Here, they show that in Staphylococcus aureus, mobile genetic elements repeatedly fuse and delete plasmids, re...
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Snorre Sulheim @sulheim.bsky.social · 18/09/2026
Finally online! Cross-feeding enables robust coexistence between four bacterial species | PNAS www.pnas.org/doi/10.1073/... #microsky
pnas.org
Cross-feeding enables robust coexistence between four bacterial species | PNAS
Resource supply is generally considered a dominant driver of microbial diversity. Here, using a four-species bacterial consortium, we asked whether...
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Ellinor Alseth @ellinoralseth.bsky.social · 11/09/2026
What a Friday, finally seeing this published in @cp-trendsmicrobiol.bsky.social! We hope this will be of interest to anyone working in the bacterial immune system field (or microbiology in general), and who wants an evolutionary take on it 🦠🧫 Open Access link: authors.elsevier.com/a/1nllx,L%7E...
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Chuliang Song @clsong.com · 10/09/2026
A wonderful review by Stefano on 100 years of Lotka–Volterra models. Don’t miss the incredibly detailed Supplement, truly the “War and Peace” of LV models. I really wish it had existed when I was a grad student! doi.org/10.1146/annu...
doi.org
One Hundred Years of Lotka–Volterra Models
Over the past century, the generalized Lotka–Volterra (GLV) model has grown from a mathematical curiosity to a cornerstone of theoretical ecology. Here we celebrate the enduring legacy of Lotka and Vo...
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Anna S. Weiss @annasophieweiss.bsky.social · 08/09/2026
Over the past year, I’ve been thinking a lot about functional redundancy. A concept that seems so intuitive it almost feels boring, until you really start thinking it through. So excited to see the results of this brain-twisting thought process now out 🥳 authors.elsevier.com/sd/article/S...
authors.elsevier.com
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Hanna Kokko @kokkonut.bsky.social · 04/09/2026
Are you into mathematical modelling of ecological and evolutionary systems? Look at this job ad for a senior lecturer in Lund. I've visited many times, splendid compact city, splendid department! lu.varbi.com/en/what:job/...
lu.varbi.com
Senior Lecturer in Computational Biology
Lund University welcomes applicants with different backgrounds and experiences. Gender equality, equal opportunities and diversity are fundamental principles in all parts of the University’s activit
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Chuliang Song @clsong.com · 04/09/2026
Very grateful to the editorial board for the opportunity to write about a topic I care deeply about. This review is deliberately opinionated, a personal view of where theory in community ecology stands and where it might go next. Pushback and disagreement are very welcome! doi.org/10.1146/annu...
doi.org
Toward a Conceptual Commons for Theory in Community Ecology
Community ecology has developed a rich and increasingly diverse body of theory, but its rapid expansion has outpaced efforts to compare and synthesize competing frameworks. As a result, semantic ambig...
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Alejandro Fábregas-Tejeda @alejandrofabregastejeda.com · 02/09/2026
New 📃🚨! @rosetrappes.bsky.social & I explore how #environment & #niche concepts are understood & mobilized across the life sciences & beyond, highlighting similarities & differences through a rich range of examples! 👇 philsci-archive.pitt.edu/30940/ #HPbio #philsci #philsky #evobio #envhum #HPS
A diamond-grid collage of photographs depicting diverse environments and organisms across the biosphere. From top to bottom and left to right: a lush green hillside, giraffes on an African savanna with acacia trees, rolling sand dunes of a desert, zebras grazing on open grassland, a close-up of a frog partially submerged in wetland vegetation, a temperate mountain landscape with a river valley and rocky peaks, a misty tropical rainforest canopy, a sea turtle swimming over a coral reef, an aerial view of a meandering river delta bordered by sparse woodland, a snow-dusted rocky mountain summit, and a close-up of tangled fallen tree trunks in a forest.
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Hanna Kokko @kokkonut.bsky.social · 26/08/2026
Come and work with us (the Kokkonuts) as a postdoc! Our research within (theory-evo-eco) is broad; let's say it's implicitly defined by the journal club papers we read. Which is why the application process includes a JC-related task, I hope it'll be a fun one for you! www.evoldir.net/brian/evoldi...
evoldir.net
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Christina Tudor-Sideri @dreamsofbeing.bsky.social · 21/08/2026
As I return to some of my bookmarks for the current manuscript, I also return to the words and images in the inaugural issue of Draught journal—an unceasing dialogue between past and present. draughtjournal.com/article/on-b...
draughtjournal.com
On Bookmarks and Other Ruins
<p>There is something indescribably intimate about the act of interrupting one’s reading, the act of marking one’s place in a book, a subtle gesture t
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Alejandra Ramirez @ma-ramirez.bsky.social · 12/08/2026
What happens when chaos meets noise in evolutionary game theory? 🌀🎲 We’ll explore the interplay between complexity and stochasticity in my upcoming talk at @juliacon.org Join us live on YouTube! 🔗 www.youtube.com/@TheJuliaLan... (Main stage - Tent) #ComplexSystems #EvoSky
Chaos and noise in evolutionary game dynamics. Juliacon 2026.
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Alejandro Fábregas-Tejeda @alejandrofabregastejeda.com · 11/08/2026
As simulations grow in complexity, a set of non-trivial issues emerge: diminished identifiability as free parameters become too numerous relative to exp. constraints & difficulties grasping causality. In our new 📄, we point to potential avenues to move #CellBio forward 👇 arxiv.org/abs/2608.06998
arxiv.org
Simulating is not always understanding: When model complexity obscures biology
In cell biology, computational models of biological systems range from minimal representations with a handful of parameters to whole-cell simulations tracking thousands of molecular species across a c...
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Glen Dsouza @nonresidentdesi.bsky.social · 10/08/2026
📣 We’re hiring a postdoc for @hot-mes-asu.bsky.social ! 🦠🔬 We’re looking for someone excited about microbial interactions, ecology & evolution, and using molecular genetics and microfluidics to understand microbial communities. Come do fun science with us! apply.interfolio.com/190859
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Paul Rainey @paulbrainey.bsky.social · 09/08/2026
Ever wondered how new evolutionary individuals arise? Wanted to engineer communities so the parts integrate to form a new whole? Or impose conditions that cause simple chemistries to become Darwinian? New MS shows how. Psst… don’t tell AI www.biorxiv.org/content/10.6...
biorxiv.org
Forging an evolutionary individual from separate replicators
A central puzzle in the evolution of individuality is the origin of heredity. Egalitarian transitions integrate formerly independent replicators into a higher-level individual, but this requires the c...
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Charles Mullon @charlesmullon.bsky.social · 03/08/2026
Looking for an Associate Prof position? Interested in behavioural ecology & cultural evolution? Come join us at the Dpt of Ecology and Evolution in Lausanne🇨🇭 @dee-unil.bsky.social @unil.bsky.social! Great department & great place to live. Pls RP. Apply here: wwwfbm.unil.ch/releve/appli...
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Gaurav Athreya @gauravathreya.bsky.social · 29/07/2026
wanna read the latest overview of “internal evolutionary conflicts” — scenarios where genes spread despite being organism-deleterious? and wanna learn how to model them? look at our new preprint! we introduce unifying ideas, and try hard to write accessibly. small 🧵 www.biorxiv.org/content/10.6...
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Santa Fe Institute @sfiscience.bsky.social · 27/07/2026
Applications are open for SFI's 2027 Complexity Postdoctoral Fellowships. SFI is looking for recent Ph.D. graduates with strong quantitative and computational skills who want to pursue independent, transdisciplinary research. Deadline: September 30, 2026 Apply: santafe.edu/sfifellowship
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Joanna Masel @joannamasel.bsky.social · 16/05/2026
Our paper unpacking "fitness" is out doi.org/10.1093/gene.... How to define fitness depends on what question you ask. Selection acts on organismal vital rates, longer-term outcomes make sense for genetic lineages, models link them. "Invasion fitness" = speed, but sometimes probability matters more.
doi.org
Why there are so many definitions of fitness in models
Abstract. Evolutionary “fitness” is operationalized in many different ways in models. Its role is to quantify that which is favored by natural selection. G
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Ben Kawam @benkawam.bsky.social · 23/07/2026
For those of you at #ISBE2026, I will be presenting some of my work tomorrow (Friday the 24th) at 13:15, in the Auditorium Agnelli. Would love to see you there!
Title slide: "Inferring the causes of animal social network structure from time-series data", Ben Kawam, ISBE 2026, July 24th, 2026.
Features a drawing by Laure Pigeon.State transition diagram for four dyadic behavioural states: (i) no body contact; (ii) body contact without grooming; (iii) grooming from a to b; (iv) grooming from b to a.
Each state is illustrated by a watercolor painting painting created by S. M. Pereira & J. von Nordheim.
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 21/07/2026
1/4 Every good defence needs a backup! 🛡️⚔ Out now in @natrevmicro.nature.com our Comment on "𝗶𝗺𝗺𝘂𝗻𝗲 𝘀𝗮𝗳𝗲𝗴𝘂𝗮𝗿𝗱𝗶𝗻𝗴"! 🎉 🔗 www.nature.com/articles/s41...
nature.com
Immune safeguarding as a conserved principle of antiviral defence - Nature Reviews Microbiology
All organisms defend against viral infections through active immunity mechanisms that clear the virus or population-level mechanisms that cause regulated cell death. Recent research increasingly shows...
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c. @frederikruysch.bsky.social · 16/02/2025
Nostos: il ritorno (1989), Franco Piavoli.
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Sara Mitri @saramitri.bsky.social · 16/07/2026
Beautiful new pre-print by @lambdapp.bsky.social! Rather than asking whether microbial interactions are mainly positive or negative, Prajwal asks: how strong or weak are they and why? The answer: not Gaussian, but skewed. This is similar to larger organisms, but not for the same reason. Read it!
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Glen Dsouza @nonresidentdesi.bsky.social · 12/07/2026
Excited to share that I've been awarded a 5-year NIH MIRA (R35) from the National Institute of General Medical Sciences! The lab is growing! We're recruiting postdocs and research techs interested in microbial ecology, quantitative microscopy, microfluidics, and molecular biology. Please share!
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 09/07/2026
🚨Join us at the University of Geneva! We're seeking an outstanding junior researcher to apply for an ERC or SNSF Starting Grant with our institutional support in host–pathogen interactions, bacteriology, virology, parasitology, or mycology. www.unige.ch/medecine/mim... Please share!
unige.ch
Open call : MIMOL Junior Group Leader’s application for a Starting Grant - Microbiology and molecular medicine - UNIGE
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Sorek Lab @soreklab.bsky.social · 07/07/2026
Discovery of bacterial immunity against plasmid conjugation. Massive effort, impressive work
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Pedro Beltrao @pedrobeltrao.bsky.social · 06/07/2026
My department @eth-dbiol.bsky.social at ETH Zurich is hiring for a tenured professor in mol cell bio and biochemistry (associate/full). The position is within the Institute of Biochemistry (www.bc.biol.ethz.ch) and it is fairly open within their scope of research. www.nature.com/naturecareer...
nature.com
Professor of Molecular Cell Biology and Biochemistry - Zurich, Switzerland job with ETH Zurich | 12861386
The Department of Biology at ETH Zurich invites applications for the above-mentioned tenured professorship at the Institute of Biochemistry
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Michael Sieber @michaelsieber.bsky.social · 01/07/2026
Have ideas for your own, independent research program in Theoretical Biology? Then come and join us as a Group Leader at the @mpi-evolbio.bsky.social in Plön, Germany!
mpg.de
Group Leader in Theoretical Biology (m/f/d)
Experience in Theoretical Biology, Applied Mathematics, Theoretical Physics
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C. Brandon Ogbunu @cbo.bsky.social · 26/06/2026
1/3 🚨New Perspective🚨 (@genetics-gsa.bsky.social) "When evolvability meets constraint: reflections on empirical fitness landscapes after Weinreich et al. (2006)" 20 years after a seminal study, I discuss the forces that both constrain evolution + make it possible academic.oup.com/genetics/adv...
academic.oup.com
When evolvability meets constraint: reflections on empirical fitness landscapes after Weinreich et al. (2006)
Abstract. In 2006, a manuscript appeared with a provocative title: “Darwinian evolution can follow only very few mutational paths to fitter proteins.” Twen
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Nature Microbiology @natmicrobiol.nature.com · 29/06/2026
Out Now! Epistatic interactions inform rational design of synthetic microbial communities for bioremediation #MicroSky
go.nature.com
Epistatic interactions inform rational design of synthetic microbial communities for bioremediation
Nature Microbiology, Published online: 29 June 2026; doi:10.1038/s41564-026-02386-4By taking into account the impacts of species presence, absence and potential interactions, synthetic soil microbial consortia are designed to degrade the toxic environmental contaminant bisphenol-A.
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Craig MacLean @craigmaclean.bsky.social · 27/06/2026
New #microsky#AMR Perspective paper with @penamiller.bsky.social rdcu.be/fqBJo ANTIBIOTIC RESISTANCE (IE MIC) AND TOLERANCE ARE NOT BACTERIAL TRAITS! Please read on if you want an explanation for this provocative claim.
rdcu.be
Beyond resistance and tolerance: rethinking evolutionary responses to antibiotics from the perspective of individual bacterial cells
Nature Communications - Beyond resistance and tolerance: rethinking evolutionary responses to antibiotics from the perspective of individual bacterial cells
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fbm-unil.bsky.social @fbm-unil.bsky.social · 23/06/2026
🎉 Félicitations aux professeures 𝗦𝗮𝗿𝗮 𝗠𝗶𝘁𝗿𝗶 @saramitri.bsky.social @dmf-unil.bsky.social et 𝗧𝗮𝗻𝗷𝗮 𝗦𝗰𝗵𝘄𝗮𝗻𝗱𝗲𝗿 au Département d’écologie et évolution @fbm-unil.bsky.social @unil.bsky.social qui reçoivent chacune un ERC Advanced Grant @erc.europa.eu 👉 www.unil.ch/news/fr/1781...
unil.ch
Deux ERC Advanced Grants pour la FBM
Les professeures Sara Mitri, au Département de microbiologie fondamentale, et Tanja Schwander, au Département d’écologie et évolution de l’Unil, reçoivent chacune un ERC Advanced Grant de l’European R...
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Sara Mitri @saramitri.bsky.social · 16/06/2026
Eye-opening work by @olimeacock.bsky.social (former postdoc, now PI in Sheffield). He presents an exact mapping from steady-state consumer-resource to generalized Lotka-Volterra models, revealing that cross-feeding can lead to competition for other limiting resources. Feedback pls!
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Alejandra Manjarrez @lecteroide.bsky.social · 09/06/2026
¿Cómo explicar ese calorcito que se siente al morder un jalapeño? ¿O ese picor sabroso del jengibre? Aquí les comparto mi ensayo más reciente, que explora estas y otras preguntas sobre (casi) todo lo que pica, duele y acalora. 🌶️ 🥵 www.revistadelauniversidad.mx/articles/dc9...
revistadelauniversidad.mx
Quemazón con notas de pimienta y habanero | Alejandra Manjarrez
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Craig MacLean @craigmaclean.bsky.social · 03/06/2026
Excited to share this new paper from the lab: academic.oup.com/ismej/articl...! See thread below
academic.oup.com
Eco-evolutionary responses to plasmid-dependent phage constrain the spread of multidrug-resistance plasmids
Abstract. Phage therapy offers an alternative to antibiotics for treating multidrug-resistant infections. Plasmid-dependent phages (PDPs) are promising the
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Shikhara Bhat @shikharabhat.bsky.social · 27/05/2026
Really excited to share that one part of my PhD research is now publicly accessible on preprint servers! Here is a thread explaining our (@kokkonut.bsky.social and I) work on ageing and stochastic damage/failure accumulation, available as a preprint at www.biorxiv.org/content/10.6...
biorxiv.org
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Oliver Meacock @olimeacock.bsky.social · 25/05/2026
Delighted to see this out in its final form! doi.org/10.1093/isme... We established a discussion group focussed on the history of community ecology and how it informs our understanding of microbiota. This review distils those discussions to provide a guide for microbiologists entering the field
doi.org
A microbiologist’s field guide to community ecology
Abstract. Many microbiological outcomes are shaped by the determinants of community composition, including the factors that allow pathogens to invade healt
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Charles Mullon @charlesmullon.bsky.social · 21/05/2026
New paper with the brilliant @ewanflintham.bsky.social How fast does recombination suppression evolve among sex chromosomes? We show that even weak sexual antagonism (so hard to detect) makes this fast, often via inversions fixing on X/Z depending on mating system: doi.org/10.1093/evle...
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Sara Mitri @saramitri.bsky.social · 22/05/2026
Check out our pre-print led by the fantastic Massimo Amicone, collaborating with the Bollenbach lab! tinyurl.com/4h9p8mfb We build a simple intuition on how ecological interactions affect resistance evolution by expanding evolutionary rescue theory and testing it with two large sets of experiments
tinyurl.com
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 19/05/2026
1(9 Great preprint from @wcratcliff.bsky.social @elibbyscience.bsky.social on obligate multicellularity and collective adaptation in snowflake yeast. Thought-provoking results! But I think the paper also highlights a deeper conceptual issue in the #multicellularity field. Let me explain:
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Alejandro Fábregas-Tejeda @alejandrofabregastejeda.com · 18/05/2026
I am genuinely humbled by the kind words from the first readers of my book! The 📗 is fully #openaccess, made possible by the generosity of libraries worldwide and @mitpress.bsky.social's D2O program: direct.mit.edu/books/oa-mon... Please help spread the word! #booksky #philsci #philsky #histsci
direct.mit.edu
The Organism-Environment Pairing: A Historical and Philosophical Reappraisal
A historical and philosophical exploration of the organism-environment relationship and its role in shaping biological thought.In this first systematic boo
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RUB History & Philosophy of Science @roto-rub.bsky.social · 12/05/2026
Interested in herbaria, plants and digitization? Come work with us! 3 PhD & Postdoc Positions in History & Phil. of Biology & Digital Humanities! #ERC Project BOTLEG; @ruhr-uni-bochum.de! Deadline: 25 May '26 #HistSci #PhilSci #HPBio #EnvHist #DigitalHumanities #AcademicSky #PhDSky Details below 👇
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Richard Lenski @relenski.bsky.social · 11/05/2026
New book "A Primer for Experimental Evolution" with coauthors Michael Rose, Margarida Matos, and Joe Graves. www.worldscientific.com/worldscibook... A compact primer for students and colleagues interested in planning and designing experiments to address questions in evolutionary biology.
worldscientific.com
A Primer for Experimental Evolution
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