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Ralph Emilio Peterson

@ralphpeterson.bsky.social
509 followers 219 following 58 posts

Neuroscientist & musician interested in sensory processing, natural neuroscience, biological/artificial collective intelligence. Northeastern -> Harvard -> NYU -> Basis Research Institute

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Reposted by Ralph Emilio Peterson
Basis @basisresearch.bsky.social · 29/09/2026
Last week Basis researchers attended the National Urban Rat Summit, where ralphpeterson.bsky.social presented our work using acoustic monitoring to study rat behavior, while nickjourjine.bsky.social showcased monitoring devices on a “rat walk” 🐀. Ralph spoke with WBUR: www.wbur.org/news/2026/09...
wbur.org
Rats are constantly talking to each other. In Boston, scientists are using AI to eavesdrop
By mapping their vocal repertoire and building a rat "dictionary," nonprofit AI group Basis Research Institute hopes to help the city map where rats are, where they’ll go next and determine whether de...
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Nick Jourjine @nickjourjine.bsky.social · 20/09/2026
New preprint! TLDR: We mapped the genetic architecture of neonatal vocalization in deer mice, and found candidate genes expressed in the cerebellum that could be contributing to the evolution of temporal structure in infant cries #Bioacoustics #neuroskyence www.biorxiv.org/content/10.6...
biorxiv.org
The Genetic Architecture of Neonatal Deer Mouse Cries Implicates the Cerebellum in the Temporal Control of an Infant Social Behavior
Vocal communication is a conserved vertebrate social behavior that begins at birth with the cries of infants. These neonatal vocal signals vary across contexts to elicit parental care that matches inf...
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Dr. Becca @docbecca.bsky.social · 26/08/2026
My behavioral neuroscience lab at Northeastern is looking to recruit two new research techs! Job description and link to apply is here: northeastern.wd1.myworkdayjobs.com/careers/job/...
northeastern.wd1.myworkdayjobs.com
Laboratory Technician - The Shansky Lab
About the Opportunity Job Summary The Shansky Lab is seeking a full-time technician to conduct National Institutes of Health (NIH)-funded behavioral neuroscience research. The position includes lab ma...
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Drew Schreiner @schreinerdrew.bsky.social · 13/05/2026
Where, exactly, does learning happen in the brain? Out today in @nature.com, we identify a synaptic locus of birdsong learning and show that the circuit can be tuned to make birds learn faster - but at a cost. Read on👇 #neuroskyence 🧪 #prattle 💬 #bioacoustics Shareable link: rdcu.be/fiyrS
nature.com
A synaptic locus of song learning - Nature
Combining a computational framework and optogenetic and chemogenetic manipulations within and downstream of the cortico-basal ganglia circuit identifies the specific cortico-basal ganglia synapse...
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Felix W. Moll @mollfw.bsky.social · 07/05/2026
More control wires enable finer control. The Banerjee lab's findings on the neuroanatomical underpinnings of vocal dexterity neatly tie in with a recurring motif in brain evolution: pre-existing pathways can be selectively expanded to increase sensorimotor control and expand behavioral repertoires.
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Drew Schreiner @schreinerdrew.bsky.social · 21/01/2026
Where does learning through imitation happen in the brain? In juvenile zebra finches, we pinpoint a synaptic locus of song learning in a cortico-basal ganglia circuit and leverage this localization to measure the timescale of consolidation and make birds learn faster! #neuroskyence (1/14)
biorxiv.org
A synaptic locus of song learning
Learning by imitation is the foundation for verbal and musical expression, but its underlying neural basis remains obscure. A juvenile male zebra finch imitates the multisyllabic song of an adult tutor in a process that depends on a song-specialized cortico-basal ganglia circuit, affording a powerful system to identify the synaptic substrates of imitative motor learning. Plasticity at a particular set of cortico-basal ganglia synapses is hypothesized to drive rapid learning-related changes in song before these changes are subsequently consolidated in downstream circuits. Nevertheless, this hypothesis is untested and the synaptic locus where learning initially occurs is unknown. By combining a computational framework to quantify song learning with synapse-specific optogenetic and chemogenetic manipulations within and directly downstream of the cortico-basal ganglia circuit, we identified the specific cortico-basal ganglia synapses that drive the acquisition and expression of rapid vocal changes during juvenile song learning and characterized the hours-long timescale over which these changes consolidate. Furthermore, transiently augmenting postsynaptic activity in the basal ganglia briefly accelerates learning rates and persistently alters song, demonstrating a direct link between basal ganglia activity and rapid learning. These results localize the specific cortico-basal ganglia synapses that enable a juvenile songbird to learn to sing and reveal the circuit logic and behavioral timescales of this imitative learning paradigm. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, K99 NS144525 (DCS), F32 MH132152 (DCS), F31 HD098772 (SB), R01 NS099288 (RM), RF1 NS118424 (RM and JP)
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Reposted by Ralph Emilio Peterson
Chris Rodgers @chrisxrodgers.bsky.social · 20/12/2025
1/4 New preprint! We designed an open-source system for auditory brainstem response (ABR), a research & clinical auditory test. Costs $400 to build (vs $10K to buy a proprietary one) and works great! All open-source if you want to make one for your lab or classroom. www.biorxiv.org/content/10.6...
A figure from our preprint showing ABR data as a line plot for sounds from the left and right at different sound levels.
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Arkarup Banerjee @arkarupbanerjee.bsky.social · 19/11/2025
As a longtime fan of cool papers in @currentbiology.bsky.social, I am really thrilled to see this out! This study sets the stage for understanding the origins of novel (vocal) behaviors. Big shout out to the main architects of this work @xmikezheng20.bsky.social and @cliffscience.bsky.social
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Cedric Boeckx @cedricboeckx.bsky.social · 19/11/2025
Great @currentbiology.bsky.social study by @xmikezheng20.bsky.social @cliffscience.bsky.social @arkarupbanerjee.bsky.social 🧪🧠🐭🎶 Vocal repertoire expansion in singing mice by co-opting a conserved midbrain circuit node www.cell.com/current-biol...
cell.com
Vocal repertoire expansion in singing mice by co-opting a conserved midbrain circuit node
Zheng and Harpole et al. show that singing mice produce two major vocal modes: ancestral USVs and novel songs that follow a linearly decelerating rhythm. Although acoustically distinct, songs and USVs...
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Reposted by Ralph Emilio Peterson
Carla Golden @goldenneurons.bsky.social · 11/11/2025
Thrilled to share our new paper, out now in @natneuro.nature.com, uncovering how estradiol, the most potent estrogen, modulates reinforcement learning and reward prediction errors across biological levels. www.nature.com/articles/s41... #blueprint 1/7
nature.com
Estrogen modulates reward prediction errors and reinforcement learning - Nature Neuroscience
Dopamine encoding of reward prediction errors naturally fluctuates over females’ reproductive cycles with estrogenic signaling due to reduced expression of dopamine reuptake proteins.
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Estelle in ‘t Zandt @eintzandt.bsky.social · 27/10/2025
Super excited to share the first part of my thesis work! Perhaps how you might be able to both recognize someone’s voice *and* understand what they’re saying, we find that both social identity and vocalization category can be decoded from gerbil auditory cortex activity👂🧠 tinyurl.com/4fba6wk4
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Ari Strandburg-Peshkin @arispeshkin.bsky.social · 26/10/2025
Less than a week left to apply!
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Kelsey Tyssowski @kelseytea.bsky.social · 22/10/2025
🧠🌟🐭 Excited to share some of my postdoc work on the evolution of dexterity! We compared deer mice evolved in forest vs prairie habitats. We found that forest mice have: (1) more corticospinal neurons (CSNs) (2) better hand dexterity (3) more dexterous climbing, which is linked to CSN number🧵
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Ari Strandburg-Peshkin @arispeshkin.bsky.social · 03/10/2025
⭐PhD position available!⭐ Come join us @imprs-qbee.bsky.social to study communication and collective behavior in animal groups! We're looking for someone excited to use computational approaches to tackle biological questions, using our full-group tracking datasets imprs-qbee.mpg.de/121465/analy...
imprs-qbee.mpg.de
Analysis of communication and collective behavior in animal groups
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Scientific American @sciam.bsky.social · 15/09/2025
A new preprint field study reveals that New York City’s rats aren’t just survivors—they’re talkative city dwellers with their own hidden nightlife. Mapping their movements and conversations could offer insights to transform urban planning and pest control
scientificamerican.com
New York City’s Rats Have a Secret Nightlife—And a Language Humans Can’t Hear
A new preprint field study reveals that New York City’s rats aren’t just survivors—they’re talkative city dwellers with their own hidden nightlife. Mapping their movements and conversations could offe...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 15/09/2025
🌆🐀Scientific American article about the project we're starting on NYC rats!! scientificamerican.com/article/scie... w/ Emily Mackevicius, Dima Batenkov, @zamakany.bsky.social, @basisresearch.bsky.social Seeking collaborators and funders 🐀🌆
scientificamerican.com
New York City’s Rats Have a Secret Nightlife—And a Language Humans Can’t Hear
A new preprint field study reveals that New York City’s rats aren’t just survivors—they’re talkative city dwellers with their own hidden nightlife. Mapping their movements and conversations could offe...
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Felix W. Moll @mollfw.bsky.social · 11/09/2025
New paper on precise tool use learning in carrion crows @currentbiology.bsky.social. We show that—like New Caledonian crows—expert carrion crows pay close attention to the working end of their tool, suggesting tool integration into their peripersonal space. 🧵 & vids! 👇 www.cell.com/current-biol...
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Ann Kennedy @antihebbiann.bsky.social · 22/08/2025
Can't wait to read this preprint from Misha Ahrens and team. Calcium imaging in larval zebrafish, in every cell in the body! Amazing. www.biorxiv.org/content/10.1...
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The Transmitter @thetransmitter.bsky.social · 19/08/2025
What do neuroscience labs and the streets of New York City have in common? They are both commonly home to rats, a feature this research team is leveraging to study rat social cognition in the wild. By @martajhill.bsky.social #neuroskyence www.thetransmitter.org/social-cogni...
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Nick Audette (He/His) @njaudette.bsky.social · 01/08/2025
The lab is growing! Our team is seeking talented scientists to study flexible sensory processing. We design freely-moving and head-fixed acoustic behaviors alongside acute and wireless neural recordings. PD and grad roles available Please help spread the word 🙏🧠🎵🐭 neurojobs.sfn.org/job/38911/po...
neurojobs.sfn.org
Postdoctoral Neuroscience Researcher - Storrs Mansfield, Connecticut job with Audette Lab, University of Connecticut | 38911
Fully funded postdoctoral research position studying context-dependent sensory processing in the mouse motor and auditory thalamus and cortex.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
New preprint!

 tl;dr — We ran around late at night to record wild rats in NYC and figured out how to quantify their behavior and environment. 🧵 w/ Dima Batenkov, @zamakany.bsky.social, Emily Mackevicius www.biorxiv.org/content/10.1...
biorxiv.org
Computational Urban Ecology of New York City Rats
Urban rats are highly adaptable, thriving in the dynamic and often inhospitable conditions of modern cities. Despite substantial mitigation efforts, they remain an enduring presence in urban environme...
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John Pearson @jmxpearson.bsky.social · 24/07/2025
Ok, reinforcement learning fans: RL is great, but what do we do when there's no obvious reward from the environment? What about perfecting a golf swing or a foxtrot or a musical performance? We may have an answer. A tale of 🐦 🎶 + 🧠. 🧵1/ #bioacoustics #prattle 💬 #neuroai #compneuro
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Felix Baier @felixbaier.bsky.social · 23/07/2025
🚨Very happy that my PhD work is now out in @nature.com! We discovered that evolution, by acting in the midbrain, shifted the threshold to escape in Peromyscus mice, to fine-tune defensive strategies in different environments www.nature.com/articles/s41... This was a truly collaborative effort! 🧵⬇️
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Marcelo Mattar @marcelomattar.bsky.social · 02/07/2025
Thrilled to see our TinyRNN paper in @nature! We show how tiny RNNs predict choices of individual subjects accurately while staying fully interpretable. This approach can transform how we model cognitive processes in both healthy and disordered decisions. doi.org/10.1038/s415...
doi.org
Discovering cognitive strategies with tiny recurrent neural networks - Nature
Modelling biological decision-making with tiny recurrent neural networks enables more accurate predictions of animal choices than classical cognitive models and offers insights into the underlying cog...
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Sonica Saraf @sonicasaraf.bsky.social · 29/06/2025
In many brain areas, neuronal tuning is heterogeneous. But how does this diversity help behavior? We show how tuning diversity shapes representational geometry and boosts coding efficiency for perception in our new preprint: www.biorxiv.org/content/10.1... (w/ @sueyeonchung.bsky.social&Tony Movshon)
biorxiv.org
Variations in neuronal selectivity create efficient representational geometries for perception
Our visual capabilities depend on neural response properties in visual areas of our brains. Neurons exhibit a wide variety of selective response properties, but the reasons for this diversity are unkn...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 20/06/2025
cheap speaker playback system for field experiments!
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Nick Jourjine @nickjourjine.bsky.social · 18/06/2025
Very happy to share the latest from my postdoc‬! 10 yrs of mouse social networks + 1.25 yrs of acoustic data ➡️ insight into vocalization & sociality in a wild population of your favorite lab model 🐁 paper: bit.ly/4n93yyD data: bit.ly/4lfFBEk code: bit.ly/4kNnMwx #bioacoustics #neuroskyence 1/8
Graphical abstract for "Vocal communication is seasonal in social groups of wild, free-living house mice."

The abstract has, from top to bottom, a title, four middle image panels, and two bottom text panels.

Image title: "Vocal communication in social groups of wild-free living house mice"

Middle image panels from left to right: (1) An aerial snap shot of the region where the study site is located, an agricultural landscape in rural Switzerland. (2) An image of the study site, a small barn in the forest inhabited by mice. (3) An image of a radio frequency identification (RFID) box used to track mouse social interactions. A mouse is entering the box from the left while another sits outside. (4) A spectrogram showing example vocalizations - one low frequency squeak and one ultrasonic call - recorded from an RFID box.

Bottom panels:
Left: Data Collection 
- 10 years of RFID-based tracking data (from 6,946 mice)
- 15 months of acoustic monitoring (totaling 6,594 hours)
- Machine learning for vocal detection and labeling (CNN)

Right: Key Findings
- Vocalization is seasonal (most in spring and summer)
- Vocalization is associated with the presence of pups
- Vocalization is correlated with social group dynamics
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Hannah Payne @hannahpayne.bsky.social · 11/06/2025
My latest Aronov lab paper is now published @Nature! When a chickadee looks at a distant location, the same place cells activate as if it were actually there 👁️ The hippocampus encodes where the bird is looking, AND what it expects to see next -- enabling spatial reasoning from afar bit.ly/3HvWSum
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Constantinople lab @constantinoplelab.bsky.social · 21/05/2025
David Hocker’s paper about compositional pretraining for RNNs that efficiently produces animal-like behaviors! Modeling cognitive tasks in RNNs requires thinking about latent abilities that animals bring to an experiment. Funded by NIH/CRCNS. www.nature.com/articles/s42...
nature.com
Compositional pretraining improves computational efficiency and matches animal behaviour on complex tasks - Nature Machine Intelligence
Hocker et al. demonstrate a method for training recurrent neural networks, which they call ‘kindergarten curriculum learning’, involving pretraining on simple cognitive tasks to improve learning effic...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 09/05/2025
I’m a Dr now! (And new dad 😊). Thanks to all my mentors, colleagues, friends, and family past and present.
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Kishore Kuchibhotla @kishoreneuro.bsky.social · 14/04/2025
🦇👂🧠Our first bat paper is out! 🧠👂🦇 How do bats tell navigation from social calls? Led by the fearless Dr. Jenni Lawlor, we used 2P imaging to show that the auditory midbrain encodes categorical primitives. Check it out @natneuro.nature.com: rdcu.be/ehEgz
rdcu.be
Spatially clustered neurons in the bat midbrain encode vocalization categories
Nature Neuroscience - Using two-photon imaging in awake bats, the authors show that the inferior colliculus encodes vocalization categories as categorical primitives—spatially clustered,...
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Catherine Dulac @dulaclab.bsky.social · 15/04/2025
I highly recommend this inspiring new book by Nahum Ulanovsky! A plea for neuroscientists to embrace “Natural Neuroscience”: use emerging technologies to uncover meaningful behavior and neural representations in free-roaming animals exposed to real-world stimuli. mitpress.mit.edu/978026204499...
mitpress.mit.edu
Natural Neuroscience
Natural neuroscience departs from the classical reductionist approach, which emphasizes control at the expense of natural behaviors, by proposing a shift tow...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 09/04/2025
would love to embed some existing *ultrasonic* audio recordings into some pre-trained ANN feature space — anyone know of any *ultrasonic* networks out there? cc @animal-prattle.bsky.social @earthspecies.bsky.social @timsainburg.bsky.social @nicholdav.bsky.social @nickjourjine.bsky.social
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Arkarup Banerjee @arkarupbanerjee.bsky.social · 06/04/2025
Our first look at midbrain PAG’s role in singing mouse vocal control. When near each other, these mice produce two divergent vocal modes. Same circuits for USVs and Songs—or different ones? Bets were made..some of us bought beers for others! Led by @xmikezheng20.bsky.social & Clifford Harpole. 👇🏽
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Kelsey Anbuhl @anbuhlk.bsky.social · 04/04/2025
Excited to share my latest work just out in @pnas.org! This NIH MOSAIC K99-funded project identifies a top-down cortical circuit—from cingulate to auditory cortex—that supports auditory perceptual performance in challenging listening conditions: www.pnas.org/doi/10.1073/...
pnas.org
The cingulate cortex facilitates auditory perception under challenging listening conditions | PNAS
We often exert greater cognitive resources (i.e., listening effort) to understand speech under challenging acoustic conditions. This mechanism can ...
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animal prattle @animal-prattle.bsky.social · 21/03/2025
Finally, a stochastic parrot I care about Mike Long's group shows a topological mapping in budgie brain area that projects to vocal motorneurons, similar to what we see in analogous area of human speech motor cortex, unlike what we see in the same area in zebra finches #prattle 💬 #bioacoustics
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Steve Shea @neuroshea.bsky.social · 11/03/2025
Everything sucks. Let’s carve out a little space for something that doesn’t. Music League is an app for making collaborative themed playlists. Looking forward to hearing the music that inspires you in times of rage, anxiety, and heartbreak. app.musicleague.com/l/8093706cca... Please RT
app.musicleague.com
Music League | Login
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Jeremy Magland @jeremymagland.bsky.social · 27/02/2025
Neurosift v2 has been released, check it out! neurosift.app @dandiarchive.org @nwb.org @openneuro.bsky.social #openscience #opensource #neurophysiology
neurosift.app
Neurosift
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Nixon Lab @nixonlab.bsky.social · 03/01/2025
Thanks to NIH funding that allowed us to appreciate this relationship. www.cnn.com/2025/01/03/h...
cnn.com
US Surgeon General sounds alarm about link between alcohol and cancer | CNN
The advisory “highlights alcohol use as a leading preventable cause of cancer in the United States, contributing to nearly 100,000 cancer cases and about 20,000 cancer deaths each year.”
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David Schoppik @schoppik.com · 02/01/2025
Big paper from @paigel.bsky.social in our lab: Sensory feedback is always crucial for proper development, right? Wrong! Crazier still, the motor system is the slowest part of a developing reflex circuit! Surprises abound in this bluetorial c’mon along…. www.science.org/doi/10.1126/... 1/19
science.org
Sensation is dispensable for the maturation of the vestibulo-ocular reflex
Vertebrates stabilize gaze using a neural circuit that transforms sensed instability into compensatory counterrotation of the eyes. Sensory feedback tunes this vestibulo-ocular reflex throughout life....
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 02/01/2025
Ty for the shoutout @animal-prattle.bsky.social! Had a great time getting feedback on this work at #NeurIPS2024
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 26/12/2024
Thanks @elife.bsky.social for featuring our work with an eLife digest! elifesciences.org/digests/8989...
elifesciences.org
Eavesdropping on gerbil dialects
Families of Mongolian gerbils communicate using different vocal patterns, which may help individuals identify their relatives.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 26/12/2024
Happy holidays, happy new year, happy to reintroduce our gerbil vocal dialect paper! Final version now available in eLife elifesciences.org/articles/89892
elifesciences.org
Unsupervised discovery of family specific vocal usage in the Mongolian gerbil
Gerbils exhibit stable, family-specific vocal dialects over weeks, suggesting vocal communication may play a key role in representing kinship in natural social groups.
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Talmo Pereira @talmo.bsky.social · 03/12/2024
In case you haven't seen it yet, movement is one of the most interesting and well engineered toolkits working with pose tracking data like from sleap.ai! Strong recommend 🤙
sleap.ai
Social LEAP Estimates Animal Poses (SLEAP) — SLEAP (v1.3.3)
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Cristian Gutierrez-Ibañez @gallinaciega.bsky.social · 18/12/2024
I was very honoured to have been invited to speak at the 2025 GRC conference in Neuroethology. Join us from June 29 - July 4 in Italy!! www.grc.org/neuroetholog...
grc.org
2025 Neuroethology: Behavior, Evolution and Neurobiology Conference GRC
The 2025 Gordon Research Conference on Neuroethology: Behavior, Evolution and Neurobiology will be held in Lucca (Barga), Lucca Italy. Apply today to reserve your spot.
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The Transmitter @thetransmitter.bsky.social · 13/12/2024
“Neuroscience has never been better positioned to make transformative discoveries about how intelligence emerges from neural circuits … But to truly harness them, we need a new research model that can drive systematic breakthroughs,” argues @davidamarkowitz.bsky.social bit.ly/3ZO2hUa #neuroskyence
thetransmitter.org
Solving intelligence requires new research and funding models
Our research ecosystem isn't built to deliver the breakthroughs needed to understand intelligence at scale. We need a dedicated research institution to take up the task.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 10/12/2024
Excited to share our #NeurIPS2024 paper on deep learning models and benchmark datasets for localizing + attributing vocalizations in social interactions! Please come visit the poster on Friday 11am-1pm PST in West Ballroom A-D #5406. Paper link: www.biorxiv.org/content/10.1...
biorxiv.org
Vocal Call Locator Benchmark (VCL) for localizing rodent vocalizations from multi-channel audio
Understanding the behavioral and neural dynamics of social interactions is a goal of contemporary neuroscience. Many machine learning methods have emerged in recent years to make sense of complex vide...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 10/12/2024
Hi 🔵☁️! My name is Ralph - I am working on my PhD in neuroscience at NYU where I research auditory processing and vocal communication. I’m generally interested in how the brain controls behavior, perception, and understanding neural function in natural contexts (e.g. social interactions, in the wild)
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 17/10/2023
Are you in the midst of neuroscience PhD program applications? Want an extra pair of eyes on your application? If you’re applying to NYU, students have organized a program to review your app with you before you submit and give general advice! forms.gle/JdeQb2tTmeLo...
forms.gle
NYU Application Support Group Matching Form 2023
Dear Prospective NYU Neuroscience PhD Students, We are a group of current NYU Neuroscience PhD students who would like to help you with your PhD applications. We want to support anyone who is applyin...
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