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Ralph Emilio Peterson

@ralphpeterson.bsky.social
511 followers 219 following 58 posts

Neuroscientist & musician interested in sensory processing, natural neuroscience, biological/artificial collective intelligence. Northeastern -> Harvard -> NYU -> Basis Research Institute

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Reposted by Ralph Emilio Peterson
Basis @basisresearch.bsky.social · 29/09/2026
Last week Basis researchers attended the National Urban Rat Summit, where ralphpeterson.bsky.social presented our work using acoustic monitoring to study rat behavior, while nickjourjine.bsky.social showcased monitoring devices on a “rat walk” 🐀. Ralph spoke with WBUR: www.wbur.org/news/2026/09...
wbur.org
Rats are constantly talking to each other. In Boston, scientists are using AI to eavesdrop
By mapping their vocal repertoire and building a rat "dictionary," nonprofit AI group Basis Research Institute hopes to help the city map where rats are, where they’ll go next and determine whether de...
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Reposted by Ralph Emilio Peterson
Nick Jourjine @nickjourjine.bsky.social · 20/09/2026
New preprint! TLDR: We mapped the genetic architecture of neonatal vocalization in deer mice, and found candidate genes expressed in the cerebellum that could be contributing to the evolution of temporal structure in infant cries #Bioacoustics #neuroskyence www.biorxiv.org/content/10.6...
biorxiv.org
The Genetic Architecture of Neonatal Deer Mouse Cries Implicates the Cerebellum in the Temporal Control of an Infant Social Behavior
Vocal communication is a conserved vertebrate social behavior that begins at birth with the cries of infants. These neonatal vocal signals vary across contexts to elicit parental care that matches inf...
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Dr. Becca @docbecca.bsky.social · 26/08/2026
My behavioral neuroscience lab at Northeastern is looking to recruit two new research techs! Job description and link to apply is here: northeastern.wd1.myworkdayjobs.com/careers/job/...
northeastern.wd1.myworkdayjobs.com
Laboratory Technician - The Shansky Lab
About the Opportunity Job Summary The Shansky Lab is seeking a full-time technician to conduct National Institutes of Health (NIH)-funded behavioral neuroscience research. The position includes lab ma...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 24/07/2026
Congratulations John! I can’t wait to see everything you get up to over there - what a great match!
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Drew Schreiner @schreinerdrew.bsky.social · 13/05/2026
Where, exactly, does learning happen in the brain? Out today in @nature.com, we identify a synaptic locus of birdsong learning and show that the circuit can be tuned to make birds learn faster - but at a cost. Read on👇 #neuroskyence 🧪 #prattle 💬 #bioacoustics Shareable link: rdcu.be/fiyrS
nature.com
A synaptic locus of song learning - Nature
Combining a computational framework and optogenetic and chemogenetic manipulations within and downstream of the cortico-basal ganglia circuit identifies the specific cortico-basal ganglia synapse...
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Felix W. Moll @mollfw.bsky.social · 07/05/2026
More control wires enable finer control. The Banerjee lab's findings on the neuroanatomical underpinnings of vocal dexterity neatly tie in with a recurring motif in brain evolution: pre-existing pathways can be selectively expanded to increase sensorimotor control and expand behavioral repertoires.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 11/02/2026
Pyramid Song by Radiohead is in some trippy incarnation of 7
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Reposted by Ralph Emilio Peterson
Drew Schreiner @schreinerdrew.bsky.social · 21/01/2026
Where does learning through imitation happen in the brain? In juvenile zebra finches, we pinpoint a synaptic locus of song learning in a cortico-basal ganglia circuit and leverage this localization to measure the timescale of consolidation and make birds learn faster! #neuroskyence (1/14)
biorxiv.org
A synaptic locus of song learning
Learning by imitation is the foundation for verbal and musical expression, but its underlying neural basis remains obscure. A juvenile male zebra finch imitates the multisyllabic song of an adult tutor in a process that depends on a song-specialized cortico-basal ganglia circuit, affording a powerful system to identify the synaptic substrates of imitative motor learning. Plasticity at a particular set of cortico-basal ganglia synapses is hypothesized to drive rapid learning-related changes in song before these changes are subsequently consolidated in downstream circuits. Nevertheless, this hypothesis is untested and the synaptic locus where learning initially occurs is unknown. By combining a computational framework to quantify song learning with synapse-specific optogenetic and chemogenetic manipulations within and directly downstream of the cortico-basal ganglia circuit, we identified the specific cortico-basal ganglia synapses that drive the acquisition and expression of rapid vocal changes during juvenile song learning and characterized the hours-long timescale over which these changes consolidate. Furthermore, transiently augmenting postsynaptic activity in the basal ganglia briefly accelerates learning rates and persistently alters song, demonstrating a direct link between basal ganglia activity and rapid learning. These results localize the specific cortico-basal ganglia synapses that enable a juvenile songbird to learn to sing and reveal the circuit logic and behavioral timescales of this imitative learning paradigm. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, K99 NS144525 (DCS), F32 MH132152 (DCS), F31 HD098772 (SB), R01 NS099288 (RM), RF1 NS118424 (RM and JP)
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 22/12/2025
Not surprised, congrats Megan!!
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Reposted by Ralph Emilio Peterson
Chris Rodgers @chrisxrodgers.bsky.social · 20/12/2025
1/4 New preprint! We designed an open-source system for auditory brainstem response (ABR), a research & clinical auditory test. Costs $400 to build (vs $10K to buy a proprietary one) and works great! All open-source if you want to make one for your lab or classroom. www.biorxiv.org/content/10.6...
A figure from our preprint showing ABR data as a line plot for sounds from the left and right at different sound levels.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 12/12/2025
Honestly a great combo
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 20/11/2025
Congrats Banerjee lab! Beautiful work
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Reposted by Ralph Emilio Peterson
Arkarup Banerjee @arkarupbanerjee.bsky.social · 19/11/2025
As a longtime fan of cool papers in @currentbiology.bsky.social, I am really thrilled to see this out! This study sets the stage for understanding the origins of novel (vocal) behaviors. Big shout out to the main architects of this work @xmikezheng20.bsky.social and @cliffscience.bsky.social
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Cedric Boeckx @cedricboeckx.bsky.social · 19/11/2025
Great @currentbiology.bsky.social study by @xmikezheng20.bsky.social @cliffscience.bsky.social @arkarupbanerjee.bsky.social 🧪🧠🐭🎶 Vocal repertoire expansion in singing mice by co-opting a conserved midbrain circuit node www.cell.com/current-biol...
cell.com
Vocal repertoire expansion in singing mice by co-opting a conserved midbrain circuit node
Zheng and Harpole et al. show that singing mice produce two major vocal modes: ancestral USVs and novel songs that follow a linearly decelerating rhythm. Although acoustically distinct, songs and USVs...
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Carla Golden @goldenneurons.bsky.social · 11/11/2025
Thrilled to share our new paper, out now in @natneuro.nature.com, uncovering how estradiol, the most potent estrogen, modulates reinforcement learning and reward prediction errors across biological levels. www.nature.com/articles/s41... #blueprint 1/7
nature.com
Estrogen modulates reward prediction errors and reinforcement learning - Nature Neuroscience
Dopamine encoding of reward prediction errors naturally fluctuates over females’ reproductive cycles with estrogenic signaling due to reduced expression of dopamine reuptake proteins.
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Estelle in ‘t Zandt @eintzandt.bsky.social · 27/10/2025
Super excited to share the first part of my thesis work! Perhaps how you might be able to both recognize someone’s voice *and* understand what they’re saying, we find that both social identity and vocalization category can be decoded from gerbil auditory cortex activity👂🧠 tinyurl.com/4fba6wk4
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Ari Strandburg-Peshkin @arispeshkin.bsky.social · 26/10/2025
Less than a week left to apply!
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Kelsey Tyssowski @kelseytea.bsky.social · 22/10/2025
🧠🌟🐭 Excited to share some of my postdoc work on the evolution of dexterity! We compared deer mice evolved in forest vs prairie habitats. We found that forest mice have: (1) more corticospinal neurons (CSNs) (2) better hand dexterity (3) more dexterous climbing, which is linked to CSN number🧵
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Ari Strandburg-Peshkin @arispeshkin.bsky.social · 03/10/2025
⭐PhD position available!⭐ Come join us @imprs-qbee.bsky.social to study communication and collective behavior in animal groups! We're looking for someone excited to use computational approaches to tackle biological questions, using our full-group tracking datasets imprs-qbee.mpg.de/121465/analy...
imprs-qbee.mpg.de
Analysis of communication and collective behavior in animal groups
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Scientific American @sciam.bsky.social · 15/09/2025
A new preprint field study reveals that New York City’s rats aren’t just survivors—they’re talkative city dwellers with their own hidden nightlife. Mapping their movements and conversations could offer insights to transform urban planning and pest control
scientificamerican.com
New York City’s Rats Have a Secret Nightlife—And a Language Humans Can’t Hear
A new preprint field study reveals that New York City’s rats aren’t just survivors—they’re talkative city dwellers with their own hidden nightlife. Mapping their movements and conversations could offe...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 15/09/2025
🌆🐀Scientific American article about the project we're starting on NYC rats!! scientificamerican.com/article/scie... w/ Emily Mackevicius, Dima Batenkov, @zamakany.bsky.social, @basisresearch.bsky.social Seeking collaborators and funders 🐀🌆
scientificamerican.com
New York City’s Rats Have a Secret Nightlife—And a Language Humans Can’t Hear
A new preprint field study reveals that New York City’s rats aren’t just survivors—they’re talkative city dwellers with their own hidden nightlife. Mapping their movements and conversations could offe...
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Reposted by Ralph Emilio Peterson
Felix W. Moll @mollfw.bsky.social · 11/09/2025
New paper on precise tool use learning in carrion crows @currentbiology.bsky.social. We show that—like New Caledonian crows—expert carrion crows pay close attention to the working end of their tool, suggesting tool integration into their peripersonal space. 🧵 & vids! 👇 www.cell.com/current-biol...
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Ann Kennedy @antihebbiann.bsky.social · 22/08/2025
Can't wait to read this preprint from Misha Ahrens and team. Calcium imaging in larval zebrafish, in every cell in the body! Amazing. www.biorxiv.org/content/10.1...
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The Transmitter @thetransmitter.bsky.social · 19/08/2025
What do neuroscience labs and the streets of New York City have in common? They are both commonly home to rats, a feature this research team is leveraging to study rat social cognition in the wild. By @martajhill.bsky.social #neuroskyence www.thetransmitter.org/social-cogni...
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Nick Audette (He/His) @njaudette.bsky.social · 01/08/2025
The lab is growing! Our team is seeking talented scientists to study flexible sensory processing. We design freely-moving and head-fixed acoustic behaviors alongside acute and wireless neural recordings. PD and grad roles available Please help spread the word 🙏🧠🎵🐭 neurojobs.sfn.org/job/38911/po...
neurojobs.sfn.org
Postdoctoral Neuroscience Researcher - Storrs Mansfield, Connecticut job with Audette Lab, University of Connecticut | 38911
Fully funded postdoctoral research position studying context-dependent sensory processing in the mouse motor and auditory thalamus and cortex.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 28/07/2025
Thank you Jonny! Nice to see you back on here, I hope all is well.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 27/07/2025
Thanks! We use an AudioMoth and have really liked the quality/ease of use.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 27/07/2025
lol…loved the big rat appearance, very topical
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 26/07/2025
Thank you! Some interesting vocalization observations… bsky.app/profile/ralp...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 26/07/2025
Thank you!
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 26/07/2025
Thank you! We are hosting someone on sabbatical now, so yes!
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 26/07/2025
Thank you John!
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 26/07/2025
Exactly.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
We are piloting V2 of this work and would be excited to brainstorm next directions. Please be in touch if you have comments, questions, or would like to collaborate!
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
This is probably also a good time to announce that I have parlayed this literal PhD moonlight project into a postdoc at @basisresearch.bsky.social, where I am working on Collaborative Intelligent Systems (biological and artificial) with Emily Mackevicius.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
Together, we show that it's possible to make high-resolution behavioral measurements of rats in their natural urban envt and apply modern ML tools for behavior + envt quant. We are working on more methods to map the sensory world and frameworks for inferring cognitive strategies within these worlds.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
Finally, we used a wireless ultrasonic mic to record vocalizations. We observed an amazing diversity of calls which have acoustic features that lay outside of the standard distribution reported in the lab. Also, we see interesting usage of the classically negative affect 22 kHz call during foraging.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
It's hard to interpret observations like this because in the field we cannot control environmental factors that might be causing movement. Instead, we built 3D reconstructions of the environment using gaussian splatting with the goal of building causal models that can link environment + behavior.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
We noticed periods of coordinated collective movement where some, but not all, animals appeared to participate. We implemented multi-animal tracking and a size-estimation model to show that larger rats move faster and are more likely to participate in collective bursts than smaller animals.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
Thermal imaging worked great at our sites. High SNR and able to see through vegetation in parks.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
We mined NYC311 reports of rat sightings to pick a time and place to perform the field studies. We settled on 3 recording locations in distinct environments (subway, park, sidewalk): Union Square Station, Central Park (Ramble), and W 125th St.
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 25/07/2025
New preprint!

 tl;dr — We ran around late at night to record wild rats in NYC and figured out how to quantify their behavior and environment. 🧵 w/ Dima Batenkov, @zamakany.bsky.social, Emily Mackevicius www.biorxiv.org/content/10.1...
biorxiv.org
Computational Urban Ecology of New York City Rats
Urban rats are highly adaptable, thriving in the dynamic and often inhospitable conditions of modern cities. Despite substantial mitigation efforts, they remain an enduring presence in urban environme...
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John Pearson @jmxpearson.bsky.social · 24/07/2025
Ok, reinforcement learning fans: RL is great, but what do we do when there's no obvious reward from the environment? What about perfecting a golf swing or a foxtrot or a musical performance? We may have an answer. A tale of 🐦 🎶 + 🧠. 🧵1/ #bioacoustics #prattle 💬 #neuroai #compneuro
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Felix Baier @felixbaier.bsky.social · 23/07/2025
🚨Very happy that my PhD work is now out in @nature.com! We discovered that evolution, by acting in the midbrain, shifted the threshold to escape in Peromyscus mice, to fine-tune defensive strategies in different environments www.nature.com/articles/s41... This was a truly collaborative effort! 🧵⬇️
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 18/07/2025
No thank YOU for making VocalPy! I’ve liked it so much that I used it in a ~main~ figure in my next paper
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Marcelo Mattar @marcelomattar.bsky.social · 02/07/2025
Thrilled to see our TinyRNN paper in @nature! We show how tiny RNNs predict choices of individual subjects accurately while staying fully interpretable. This approach can transform how we model cognitive processes in both healthy and disordered decisions. doi.org/10.1038/s415...
doi.org
Discovering cognitive strategies with tiny recurrent neural networks - Nature
Modelling biological decision-making with tiny recurrent neural networks enables more accurate predictions of animal choices than classical cognitive models and offers insights into the underlying cog...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 30/06/2025
One of the truly great sensorimotor transformations
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Sonica Saraf @sonicasaraf.bsky.social · 29/06/2025
In many brain areas, neuronal tuning is heterogeneous. But how does this diversity help behavior? We show how tuning diversity shapes representational geometry and boosts coding efficiency for perception in our new preprint: www.biorxiv.org/content/10.1... (w/ @sueyeonchung.bsky.social&Tony Movshon)
biorxiv.org
Variations in neuronal selectivity create efficient representational geometries for perception
Our visual capabilities depend on neural response properties in visual areas of our brains. Neurons exhibit a wide variety of selective response properties, but the reasons for this diversity are unkn...
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 23/06/2025
Amazing, congrats Dan!
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Ralph Emilio Peterson @ralphpeterson.bsky.social · 20/06/2025
cheap speaker playback system for field experiments!
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