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Nick Jourjine

@nickjourjine.bsky.social
1.5K followers 1.4K following 70 posts

Brains and bioacoustics // postdoc using animal diversity to understand animal behavior // nickjourjine.github.io // he, him

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Reposted by Nick Jourjine
Luke Larter @lukelarter.bsky.social · 21m
New preprint 🐸! We use microphone arrays and beamformer algorithms to take a detailed look at the social structure and chorusing behavior of an arboreal African frog. This work showcases the utility of this technology for studying vocalizing animals in the wild. www.biorxiv.org/content/10.6...
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Dan Stowell @danstowell.mastodon.social.ap.brid.gy · 05/10/2026
New preprint from us! "Effects of interpulse-interval variation on deep-learning classification of bat vocalizations" arxiv.org/abs/2610.02284 #bats #bioacoustics
arxiv.org
Effects of interpulse-interval variation on deep-learning classification of bat vocalizations
Temporal context may aid automated bat-species classification, but the contribution of specific features remains unclear. We investigated whether variation in the interpulse interval (IPI)-the time between consecutive call onsets-provides species-discriminative information and whether transformer-based models are more sensitive to this information than convolutional neural networks. We created two matched datasets from European bat recordings: a natural-IPI condition retaining the original call timing and a normalized-IPI condition in which call onsets were spaced at 50-ms intervals. EfficientNet-B0 and PaSST were fine-tuned and evaluated within each condition. In an additional experiment, each architecture was trained separately on natural-IPI and normalized-IPI recordings, and evaluated on the same natural-IPI test set. Finally, the pretrained classifiers BatDetect2 and BAT were evaluated on both conditions. Within-condition IPI normalization had model-dependent effects. PaSST accuracy differed little between the natural-IPI ($71 \pm 2.3\%$) and normalized-IPI ($70 \pm 6.3\%$) conditions, whereas EfficientNet accuracy increased from $47 \pm 4.7\%$ to $57 \pm 3.9\%$. PaSST exceeded EfficientNet under both conditions. In the cross-condition evaluation, models trained on natural-IPI recordings outperformed those trained on normalized-IPI recordings on the natural-IPI test set: accuracy decreased from 54% to 50% for EfficientNet and from 65% to 57% for PaSST. BatDetect2 and BAT differed little between IPI conditions. Overall, we found limited support for the hypotheses that natural IPI variation contributes substantially to bat-species classification and that it is used more effectively by transformer-based than CNN-based models. Nevertheless, the cross-condition performance decrease shows that results obtained under normalized conditions may not transfer fully to natural recordings.
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Nick Jourjine @nickjourjine.bsky.social · 29/09/2026
Very excited to be a part of this project! Stay tuned for more about the ecology and #bioacoustics of wild rats from @basisresearch.bsky.social 🐀🔉
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Xavier Mouy @xaviermouy.bsky.social · 28/09/2026
🎙️ Meet the next generation of bioacousticians! Join the upcoming Sonic Connexions meet-up to see lightning talks by graduating PhD students in #bioacoustics followed by small-group chats with the speakers. 🗓️ Tue, Oct 6 · 3:00 PM ET · Zoom 🔗 whoi-edu.zoom.us/meeting/regi... Please share!
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Dan Stowell @danstowell.mastodon.social.ap.brid.gy · 22/09/2026
OK, I'm excited to announce our second KEYNOTE speaker for BioDCASE online workshop! On Friday 23rd Oct Sarah Beery will speak about "Targeting Human Verification for Robust Deployment of AI in Ecology". Join us online! Free registration, info here: biodcase.github.io/workshop2026 […]
mastodon.social
Original post on mastodon.social
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Justus Kebschull @justuskebschull.bsky.social · 21/09/2026
NEW PREPRINT! An evo-devo look at how new cerebellar nuclei are made. Spoiler: it’s all driven by region-specific excitatory progenitors in the early rhombic lip; inhibitory neurons fill in later. If you care about brain evolution or cerebellar development, check it out: tinyurl.com/CNdevelopment
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Nick Jourjine @nickjourjine.bsky.social · 20/09/2026
New preprint! TLDR: We mapped the genetic architecture of neonatal vocalization in deer mice, and found candidate genes expressed in the cerebellum that could be contributing to the evolution of temporal structure in infant cries #Bioacoustics #neuroskyence www.biorxiv.org/content/10.6...
biorxiv.org
The Genetic Architecture of Neonatal Deer Mouse Cries Implicates the Cerebellum in the Temporal Control of an Infant Social Behavior
Vocal communication is a conserved vertebrate social behavior that begins at birth with the cries of infants. These neonatal vocal signals vary across contexts to elicit parental care that matches inf...
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Dan Stowell @danstowell.mastodon.social.ap.brid.gy · 13/08/2026
Job alert! Postdoctoral Researcher in Machine Learning for Wildlife Audio careers.universiteitleiden.nl/job/P… - here at the University of Leiden with me & my #bioacoustics team. Please share! #university #leiden […]
mastodon.social
Original post on mastodon.social
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Behavioural and Acoustics Research for K9 Sounds @barkslab.bsky.social · 22/05/2026
🎉Check our new study🎉 We found that: - dogs respond more strongly to a caller’s social motivation than to their emotional state. - the processing mechanisms for conspecific vocalizations might not directly generalize to cross-species vocalizations. www.nature.com/articles/s41...
nature.com
Dogs’ reactions to motivations and emotions in conspecific and heterospecific vocalizations - Scientific Reports
Scientific Reports - Dogs’ reactions to motivations and emotions in conspecific and heterospecific vocalizations
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Lucia DI IORIO @diioriolucia1.bsky.social · 18/05/2026
I am happy to share Marine ETHEVE's first PhD publication on the effect of environmental parameters on acoustic communities in a kelp forest. What are the drivers? Do acoustic communities reflect species assemblages? link.springer.com/article/10.1... 🦑🌎🧪 🔈 #prattle 💬 #bioacoustics
link.springer.com
Diel and tidal rhythms drive fish acoustic communities in a European kelp forest - BMC Ecology and Evolution
Changes in marine animal communities shape ecological processes and ecosystem functioning. Monitoring temporal community dynamics is increasingly important under global change, yet remains challenging...
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Dan Stowell @danstowell.mastodon.social.ap.brid.gy · 24/04/2026
Call for papers: DCASE 2026 (28-29 Oct, Boston, USA) dcase.community/workshop2026/call-f… -- #DCASE is the workshop for audio intelligence R&D #audio
dcase.community
DCASE2026 Workshop, Call for Papers - DCASE
The workshop aims to provide a venue for researchers working on computational analysis of sound events and scene analysis to present and discuss their results. The 11th Workshop on Detection and Classification of Acoustic Scenes and Events, DCASE 2026, will be held in Boston on 28-29 October. It is co-organized …
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Earth Species Project (ESP) @earthspecies.bsky.social · 21/04/2026
ESP is heading to ICLR 2026, where we’ll be presenting our paper on AVEX! We've also just added nine new usage examples and an interactive Model Selector to the AVEX project page. 🗓 Learn more: iclr.cc/virtual/2026... 📄 Project page: projects.earthspecies.org/avex/
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Anna N Osiecka 🍉 @aosiecka.bsky.social · 18/04/2026
🔊Fun new paper from the Many Parrots: pet parrots learn names from their caretakers: doi.org/10.1371/jour...
doi.org
Name use by companion parrots
Humans organize social interactions in part by referring to others using proper names (hereafter “names”). Names might also facilitate the complex social lives of animals. Several animal species produ...
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Anna N Osiecka 🍉 @aosiecka.bsky.social · 12/04/2026
🔊Out now with @lsburchardt.bsky.social @marcosqoliva.bsky.social, Kouřil & Petrusková: Yellowhammer males sing using individual isochronous rhythms & maximise rhythmic dissimilarity with their neighbours. www.sciencedirect.com/science/arti...
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Earth Species Project (ESP) @earthspecies.bsky.social · 09/04/2026
We just updated our interactive demo of NatureLM-audio with a new version of the model, v1.1. To learn what you can do with it now, check out our Prompting Guide! 🤗Demo: huggingface.co/spaces/Earth... 📄Guide: projects.earthspecies.org/naturelm-aud...
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Dan Stowell @danstowell.mastodon.social.ap.brid.gy · 07/04/2026
BioDCASE challenge now open! Datasets and code for SIX computational tasks in animal sound: biodcase.github.io/challenge2026 (Do share it to students etc!) #bioacoustics #machinelistening #ai4good #DCASE
biodcase.github.io
BioDCASE Challenge - BioDCASE
Tasks We are excited to announce the 2026 BioDCASE task line up! Multi-Channel Alignment Alignment Task 1 Bioacoustic and environmental recordings are often captured using multiple devices operating simultaneously, for example with passive autonomous recorders or animal-borne loggers. When such recordings are not temporally aligned, analyses that rely on relative …
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Carlos Araújo @carlao.bsky.social · 07/04/2026
I wish to share our package monitoraSom which is now published in Bioacoustics, and provides a flexible workflow for detecting, validating, and analyzing acoustic events in sound recordings. #PAM #Ecoacoustics #OpenScience
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FishSounds @fishsounds.bsky.social · 05/04/2026
🔉 Major FishSounds Website Update!! The beta version of the new FishSounds.net is live now and will be finalized over the next month. Most of the updates won’t necessarily be noticeable on first glance, so a few of the more consequential changes are outlined below. 🧵1/7
Screenshot of the FishSounds home page with a pop up banner announcing that changes have been made.
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Peter Cook @pfcook.bsky.social · 12/03/2026
🧠🧪🧵1/37 Our new paper on how pinniped (seal and sea lion) brains evolved to unlock vocal plasticity is this week's @science.org cover. www.science.org/doi/10.1126/...
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Earth Species Project (ESP) @earthspecies.bsky.social · 03/02/2026
Exciting news: our “What Matters for Bioacoustic Encoding” paper has been accepted to ICLR 2026! 🎉 We’ve also open-sourced the models and released AVEX, a new Python package for training and evaluating bioacoustics representation learning models. 📃 Documentation: earthspecies.github.io/avex/
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Katie Tschida @katietschida.bsky.social · 30/01/2026
So psyched for this year's Neural Mechanisms of Acoustic Communication (NMAC) GRC! Come join us in May, and please RT!
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 30/01/2026
Big thanks to today‘s speakers and to everyone who joined live! If you couldn’t make it, recordings of both talks are now up on our website, where you can find out the answer to one of life‘s most enigmatic questions: fish or fart? www.braincoustics.com
A picture of a funny cartoon fish with the words “Fish or Fart?!”
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 30/01/2026
Learn about fish bioacoustics in 1 hour (12:30pm EST)! Still time to register at braincoustics.com
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 29/01/2026
Seminar Tomorrow! These talks are going to be fishtastic, you can get the link to join by registering here: braincoustics.com
braincoustics.com
HOME | Braincoustics
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NMAC GRC 2026 @nmac2026.bsky.social · 27/01/2026
We are excited to announce that registration is open for the 2026 Neural Mechanisms of Acoustic Communication Gordon Research Conference. The preliminary program is now live: www.grc.org/neural-mecha... We invite everyone to apply! See you @ Sunday River, Maine, May 31-June 5, 2026.
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 26/01/2026
Reminders! 1. We have a fantastic seminar on fish sounds coming up this Friday the 30th @ 12:30 ET! Details/registration here: braincoustics.com 2. **Fuck ICE** It is so important for our community (for humanity!) that this fascist organization is abolished, prosecuted, and punished 1/5
braincoustics.com
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 22/01/2026
📣 New Bridging Brains and Bioacoustics Seminar next week! Join us to learn about the ecology and neuroscience of soniferous fish from Audrey Looby and Brooke Vetter 🐟🐠🐡 @FishSounds.bsky.social #bioacoustics #neuroskyence #prattle 💬 🗓️ January 30th, 12:30 ET ✅ Register here: www.braincoustics.com
Bridging Brains and Bioacoustics Seminar announcement for Friday, January 30th at 12:30 ET

From Audrey Looby, University of Victoria:
"The Prevalence and Important of Soniferous Fishes"

From Brooke Vetter, University of St. Thomas
"Anthropogenic Noise and Fish Hearing: From Ecological Impacts to Invasive Species Management"
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Drew Schreiner @schreinerdrew.bsky.social · 21/01/2026
Where does learning through imitation happen in the brain? In juvenile zebra finches, we pinpoint a synaptic locus of song learning in a cortico-basal ganglia circuit and leverage this localization to measure the timescale of consolidation and make birds learn faster! #neuroskyence (1/14)
biorxiv.org
A synaptic locus of song learning
Learning by imitation is the foundation for verbal and musical expression, but its underlying neural basis remains obscure. A juvenile male zebra finch imitates the multisyllabic song of an adult tutor in a process that depends on a song-specialized cortico-basal ganglia circuit, affording a powerful system to identify the synaptic substrates of imitative motor learning. Plasticity at a particular set of cortico-basal ganglia synapses is hypothesized to drive rapid learning-related changes in song before these changes are subsequently consolidated in downstream circuits. Nevertheless, this hypothesis is untested and the synaptic locus where learning initially occurs is unknown. By combining a computational framework to quantify song learning with synapse-specific optogenetic and chemogenetic manipulations within and directly downstream of the cortico-basal ganglia circuit, we identified the specific cortico-basal ganglia synapses that drive the acquisition and expression of rapid vocal changes during juvenile song learning and characterized the hours-long timescale over which these changes consolidate. Furthermore, transiently augmenting postsynaptic activity in the basal ganglia briefly accelerates learning rates and persistently alters song, demonstrating a direct link between basal ganglia activity and rapid learning. These results localize the specific cortico-basal ganglia synapses that enable a juvenile songbird to learn to sing and reveal the circuit logic and behavioral timescales of this imitative learning paradigm. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, K99 NS144525 (DCS), F32 MH132152 (DCS), F31 HD098772 (SB), R01 NS099288 (RM), RF1 NS118424 (RM and JP)
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Claudia Wascher @wascherclaudia.bsky.social · 06/01/2026
If you work on corvid ecology, behaviour, cognition, or conservation, this might be useful for you 👇 I’ve just published CORVIDATA in Scientific Data 🐦 doi.org/10.1038/s415... (1/4)
doi.org
CORVIDATA: A global dataset of morphology, ecology, sociality, and life-history in Corvidae - Scientific Data
Scientific Data - CORVIDATA: A global dataset of morphology, ecology, sociality, and life-history in Corvidae
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animal prattle @animal-prattle.bsky.social · 06/01/2026
Using neural networks to analyze animal communication? Check out this new #python package from @masonyoungblood.bsky.social, provides a full workflow; builds on approaches from @timsainburg.bsky.social @jmxpearson.bsky.social @nilomr.bsky.social & others #prattle 💬 #bioacoustics
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Earth Species Project (ESP) @earthspecies.bsky.social · 05/01/2026
⏰ Reminder: Task proposals for the 2026 #BioDCASE Challenge are due Jan 8. Submit your idea and help define the next set of challenge tasks! 🔗Learn more & submit: biodcase.github.io/challenge2026/ #bioacoustics #AIforconservation #animalcommunication
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Xeno-canto @xeno-canto.bsky.social · 22/12/2025
Check out this write-up on sound producing Grasshoppers in Europe, and their availability on XC www.researchgate.net/publication/... . #bioacoustics #grasshoppers #orthoptera
researchgate.net
(PDF) A list of sound producing European grasshoppers and the availability of their sounds in Xeno-canto
PDF | On Dec 8, 2025, Baudewijn Odé and others published A list of sound producing European grasshoppers and the availability of their sounds in Xeno-canto | Find, read and cite all the research you n...
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Chris Rodgers @chrisxrodgers.bsky.social · 20/12/2025
1/4 New preprint! We designed an open-source system for auditory brainstem response (ABR), a research & clinical auditory test. Costs $400 to build (vs $10K to buy a proprietary one) and works great! All open-source if you want to make one for your lab or classroom. www.biorxiv.org/content/10.6...
A figure from our preprint showing ABR data as a line plot for sounds from the left and right at different sound levels.
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animal prattle @animal-prattle.bsky.social · 15/12/2025
what's in a meow?? 🐈 New from @berlinbatlab.bsky.social! 1. "we examined meows and purrs to establish how individual identity is encoded" 2. stronger individual signature in purrs than in meows 3. domestic cat meows more variable than those of wild felids #bioacoustics #prattle 💬 #neuroskyence
Fig. 1.   Spectrograms and oscillograms of (A) two meows and (B) two purrs. Oscillograms depict sound
pressure over time, and spectrograms depict frequency over time. All spectrograms were created with a
1024-point FFT, 16-bit depth, and a Hamming Window with 87.5% overlap (sampling rate: 96 kHz, frequency  resolution: 94 Hz, time resolution: 1.33 ms). The two pictures on the right depict Koda, a 15-year-old male
Ragdoll cat, meowing and purring (credit: Marisa Idolo).
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Xavier Mouy @xaviermouy.bsky.social · 04/12/2025
Excited to see this paper out! onlinelibrary.wiley.com/doi/10.1111/... > 1,000 fish calls from 8 fish species identified including 5 whose wild calls had never been documented. The paper shows species-specific sound characteristics that offers a foundation for future species-specific detectors 🐟🔊🧪
onlinelibrary.wiley.com
Knock knock, who's there? Identifying wild species‐specific fish sounds with passive acoustic localization and random forest models
Passive acoustic monitoring (PAM) is a useful non-destructive tool for evaluating species presence, diversity and abundance. However, in marine environments, a dearth of tools and methods for identif....
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animal prattle @animal-prattle.bsky.social · 24/11/2025
How do you build a brain that lets mice sing? 🎤🐭 If you enjoyed @cliffscience.bsky.social's talk @braincoustics.bsky.social on this work, now you can read it in @currentbiology.bsky.social! (w / 1st author @xmikezheng20.bsky.social, @arkarupbanerjee.bsky.social group) #prattle 💬 #neurosky
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Xeno-canto @xeno-canto.bsky.social · 22/11/2025
... & while you're at perhaps also support the platform & community sharing the sounds used to kickstart and train most of all that passive monitoring wizardry. Which platform? You guessed it: xeno-canto.org/donate
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 21/11/2025
Thanks so much to this week‘s speakers and to everyone who joined for the discussion! Recordings of the talks are now up on our website for those who missed them live - enjoy! www.braincoustics.com #prattle 💬 #bioacoustics #neuroskyence
braincoustics.com
HOME | Braincoustics
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 13/11/2025
Big week for mouse squeaks coming up! 🐁 💬 🗓️11/18: BBB seminar with @emilyjanedennis.bsky.social and Stuart Newson of the @btobirds.bsky.social ✅ braincoustics.com 🗓️11/20-21: 4th Annual Ultrasonic Vocalization Conference (free!) ✅ bit.ly/3JRVOCu #bioacoustics #neuroskyence #prattle 💬
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Nick Jourjine @nickjourjine.bsky.social · 06/11/2025
FYI! #bioacoustics #neuroskyence
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Yuki Haba @yukihaba.bsky.social · 25/10/2025
How does life evolve to adapt to modern cities? Out now in Science, my PhD work with @lindymcbr.bsky.social uncovers the ancient origin of the “London Underground mosquito” – one of the most iconic examples of urban adaptation. 🧵(1/n) @science.org www.science.org/doi/10.1126/science.ady4515
science.org
Ancient origin of an urban underground mosquito
Understanding how life is adapting to urban environments represents an important challenge in evolutionary biology. In this work, we investigate a widely cited example of urban adaptation, Culex pipie...
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Julio Hechavarria @talking-bat.bsky.social · 25/10/2025
Our new preprint is out! This time with a focus on prevocal spiking in the AC and how it encodes single and multi-syllabic vocalizations before they occur!
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ascalaphid @ascalaphid.com · 24/10/2025
40% off sale on all my stickers because I was up until 1AM revamping my shop. discount code is PEPO ko-fi.com/ascalaphid/l...
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 24/10/2025
Thanks to yesterday‘s speakers and to everyone who joined in! Recordings of Cliff and Léo‘s fantastic talks are now up on our website, where you can also register early for next month‘s seminar (mice, part 2!) www.braincoustics.com
braincoustics.com
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Earth.fm @earth-fm.bsky.social · 24/10/2025
Quiet and lovely nocturnal sounds with mating calls of midwife toads and tawny owls 🌙 Recording by @melissapons.bsky.social earth.fm/recordings/m...
earth.fm
Midwife toads and tawny owls mating calls - earth.fm
A warm October evening in this region is when one is more likely to hear the midwife toad (Alytes) because, even though they can sing throughout the summer, here in Alentejo, the months between June…
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Nick Jourjine @nickjourjine.bsky.social · 23/10/2025
Ground breaking work here from my esteemed colleague @kelseytea.bsky.social ! Natural behavior + neural mechanism + genetics tell a beautiful story about the evolution of an adaptive behavior in wild mice Read it! #neuroskyence
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 22/10/2025
Join us tomorrow for two great neuro-eco-evo talks! Sign up here: braincoustics.com #bioacoustics #neuroskyence
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Bridging Brains and Bioacoustics @braincoustics.bsky.social · 16/10/2025
One week until this fantastic seminar with speakers @cliffscience.bsky.social and @leo-perrier.bsky.social Register here for the link! braincoustics.com #bioacoustics #neuroskyence
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John McCafferty @jdmccafferty.bsky.social · 14/10/2025
Two mice, Joris Hoefnagel, 1594 Hoefnagel made this drawing especially for his friend Johannes Muisenhol from Frankfurt. The image refers to his surname. The extinguished candle & eaten walnut represent the transience of life.
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Nicholdav @nicholdav.bsky.social · 11/10/2025
When part of a word is replaced by noise, humans still hear the whole word. How do brains do this? New from Meliza group in @natcomms.nature.com Le et al. study this in zebra finches, a model system for vocal learning www.nature.com/articles/s41... #prattle 💬 #neuroskyence 1/5
nature.com
The zebra finch auditory cortex reconstructs occluded syllables in conspecific song - Nature Communications
Neural mechanisms underlying auditory restoration are not fully understood. Here authors show that, neural populations of the zebra finch in the equivalent of auditory cortex respond to song with deleted syllables as if the missing syllables were actually present, indicating that information about the temporal structure of song is stored in this area. Their findings suggest that the internal model has a generalized representation of species-typical syntax.
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