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Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷

@ppalagi.bsky.social
247 followers 233 following 15 posts

Director of the SIB Training Group at the SIB Swiss Institute of Bioinformatics. A passionate advocate for bioinformatics training and effective training practices. Animal lover with a special affection for cats and dogs.

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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Daan de Groot @dhdegroot.bsky.social · 1h
Update to @golobor.bsky.social message: distortion-free Bonsai trees >> umaps > quick trees Picture shows realistic simulated scRNA-seq data and how well Bonsai represents its structure, while another tree-representation does not. It shows that a tree is not all you need. You actually have to
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
🗽LOLGOP🗽 @lolgop.bsky.social · 29/09/2026
“You don’t have to stretch to paint this picture: OpenAI models are attacking websites and taking anything they can out of them because that is the business model of the company.”
prospect.org
Why Is Sam Altman a Free Man? - The American Prospect
OpenAI’s models aren’t “going rogue” from their creators as much as they are mimicking them.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Ursula von der Leyen @vonderleyen.ec.europa.eu · 28/09/2026
Today, science became a target for Russia. My heart goes out to the heroes searching for people trapped inside Ukraine’s National Academy of Sciences. As well as to the families and loved ones of the victims of horrific attacks across the country.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Marc Robinson-Rechavi @marcrr.bsky.social · 28/09/2026
I'm not writing in the NYT and I won't word it carefully: it's clear that AI companies are stealing researchers' work (and why wouldn't they? they steal artists' and journalists' work with no consequences), and I warned my group about it this morning.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Stephen Turner @stephenturner.us · 26/09/2026
Personal essay, weekend edition. My relationship with AI is changing. 1.8k words, 8 min reading time. doi.org/10.59350/bh7...
doi.org
My relationship with AI is changing
When the facts change, I change my mind. What do you do, sir?
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Ming Tommy Tang @tommytang.bsky.social · 26/09/2026
"The bioinformatician is not being replaced. The job is what it always was: understand the biology, know where the tools fail, and trust output only as we understand and can measure what it is generating. " read 👉 www.linkedin.com/pulse/what-...
linkedin.com
What AI Actually Changes for the Working Bioinformatician
After watching and participating in developing several generations of tooling in biology, the honest question about AI and careers isn't whether the bioinformatician gets replaced. It's which part of the work changed, what the bioinformatician now had to understand, and what teaching has to change t
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Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷 @ppalagi.bsky.social · 25/09/2026
🎉 The ELIXIR-GOBLET Train-the-Trainer handbook is now openly available! Practical guidance for anyone who trains others. Huge thanks to Allegra Via, @elixir-europe.org Training Platform, GOBLET & all contributors 💙 elixir-europe-training.github.io/ELIXIR-TrP-G... #TrainTheTrainer #OpenScience
Screenshot of the ELIXIR-GOBLET Train-the-Trainer handbook in GitHub.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 16/09/2026
Happy to see this one out in @plos.org #Computational #Biology | Ten simple rules for suggesting reviewers during a paper submission | #Education #PLOSCBTSR #Writing #Reviewing #Rule10PayItForward | 🧪🔓 🇺🇸🇨🇭🇧🇷🇨🇦 CC/ @ppalagi.bsky.social @fmacg.bsky.social ⬇️ journals.plos.org/ploscompbiol...
journals.plos.org
Ten simple rules for suggesting reviewers during a paper submission
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Kobal2 @paskobal2.bsky.social · 12/09/2026
y a des chances assez largement >0 qu'iel crève de faim ou de froid dans les semaines qui suivent... et ce, même sans exécution pour homosexualité dans le milieu.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 01/09/2026
From Greg Wilson in arXiv | Twelve Quick Tips for Managing IT Disasters in Small Research Software Teams | #Informatics #OpenScience #Research #IT #DisastersPlanning #NotYetAPLOSCBQT | 🖥️🧪🔥🔓 ⬇️ arxiv.org/abs/2608.27196
arxiv.org
Twelve Quick Tips for Managing IT Disasters in Small Research Software Teams
In 2025, the US government launched an unprecedented series of attacks on its own scientific research groups. A year later GitHub dropped below 90% availability for the first time, while wildfires in ...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Pedro Beltrao @pedrobeltrao.bsky.social · 04/09/2026
Another AI agent swarm cooperation example discovered on a wiki. That these things are not atracting more public discussion is beyond me. collusion.wiki
collusion.wiki
Discovery of a new OpenAI agent message board
A swarm of autonomous AI agents, self-identifying as OpenAI agents, used a small German volunteer wiki to save answers, coordinate live, and share sandbox bypasses. OpenAI noticed and said nothing.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
European Conference on Computational Biology @eccb-europe.bsky.social · 04/09/2026
ECCB ended yesterday with tutorials & workshops on a range of bioinformatics topics: eccb2026.org/tutorials-wo... Thank you organizers, speakers and participants for the demonstrations, discussions and exercises. #ECCB2026
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
European Conference on Computational Biology @eccb-europe.bsky.social · 04/09/2026
Bioinformatics communities continued discussions and advances today, in satellite ECCB events, including on: - pathogen data sharing; - best practices for single-cell and spatial omics; - FAIRification at scale. See the programme: eccb2026.org/communities-... #ECCB2026
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 03/09/2026
From #OUP s @bioinfoadv.bsky.social journal | Usage and impact of global biodata resources | #Bioinformatics #Database #OpenScience #OpenData #GlobalBiodataCoalition | 🧬🖥️🧪🔓 CC/ @ebi.embl.org @elixir-europe.org ⬇️ academic.oup.com/bioinformati...
academic.oup.com
Usage and impact of global biodata resources
AbstractMotivation. Biodata resources constitute a critical, large-scale, and globally distributed infrastructure underpinning life science research, yet t
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Nav @naveed-ishaque.bsky.social · 01/09/2026
I am thrilled to share that today I was promoted to Professor of Cancer Bioinformatics at @bihatcharite.bsky.social! It's been an emotional day reflecting on everyone who dedicated their time, energy, and trust in me. So much to be grateful for, and so much excitement for the adventures ahead.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
European Conference on Computational Biology @eccb-europe.bsky.social · 01/09/2026
This morning we remembered four computational biology pioneers, who the world sadly lost over the past year. Thank you to all speakers for your moving tributes at ECCB. #ECCB2026 #Bioinformatics
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Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷 @ppalagi.bsky.social · 31/08/2026
I’m on my way to #ECCB2026 in Geneva, by bus ☺️. So nice to have such a conference at home. Pass by the @sib.swiss booth to say hello and talk about #training if you are around!
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Chappatte Cartoons @chappatte.bsky.social · 30/08/2026
Canada’s response - © Chappatte in @nzz.ch am Sonntag, Zürich - 👉 chappatte.com
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Ecotype @ecotype.bsky.social · 30/08/2026
So many great Canada cartoons out there right now, but @chappatte.bsky.social is today’s winner for sure. Make sure to follow him. 🤣🧡
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Nick Young @nickofnz.bsky.social · 26/08/2026
Adapting to climate change without ending the fossil fuel industry.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
EMBL-EBI @ebi.embl.org · 27/08/2026
Congratulations to our former Director, Dame Janet Thornton! @royalsociety.org has awarded Janet the Croonian Medal and Lecture for her pioneering work in protein & structural bioinformatics. The award recognises the key role of big data & bioinformatics in the life sciences. tinyurl.com/3sdr3xhp
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 27/08/2026
From @plosone.org | Diamond Open Access publishing practices among researchers in #Ghana | #OpenScience #OpenAccess #DiamondOpenAccess #DOA #OA #Research | 🧪 🔓 🇬🇭 ⬇️ journals.plos.org/plosone/arti...
journals.plos.org
Diamond Open Access publishing practices among researchers in Ghana
The rise of Diamond Open Access (DOA) represents a major transformation in scholarly communication, redefining traditional systems of knowledge distribution. Diamond open access model has gained recog...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 22/08/2026
From @plos.org #Computational #Biology | Eleven quick tips for Biomedical Federated Learning | #Bioinformatics #Education #PLOSCBQT #ML #FL CC/ @ppalagi.bsky.social | 🧬🖥️🧪🔓 ⬇️ journals.plos.org/ploscompbiol...
journals.plos.org
Eleven quick tips for Biomedical Federated Learning
Modern statistical and machine learning techniques are effective at describing, testing hypotheses and making predictions from complex data. This effectiveness is strongly influenced by the volume and...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 19/08/2026
From #NCBI Insight | NCBI Taxonomy Has a New Home | #OpenScience #OpenData #Bioinfornatics #Genomics #Proteomics #Taxonomy #TaxID #Taxon | 🧬🖥️🧪🔓 ⬇️ ncbiinsights.ncbi.nlm.nih.gov/2026/08/19/n...
ncbiinsights.ncbi.nlm.nih.gov
NCBI Taxonomy Has a New Home - NCBI Insights
We are excited to introduce the new NCBI Taxonomy, with updated tools and resources to improve how you browse taxonomic information and access NCBI data, including sequences, genomes, and other resour...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
fbm-unil.bsky.social @fbm-unil.bsky.social · 17/08/2026
🧬 Les partenaires se ressemblent davantage que ce que le hasard présagerait, ce qui laisse des traces dans le génome de leurs enfants. Des scientifiques @fbm-unil.bsky.social @sib.swiss ont développé une nouvelle méthode permettant de déduire ce phénomène. Lire la suite 👉 www.unil.ch/news/fr/1786...
unil.ch
Qui se ressemble, s’assemble! La génétique le démontre
Les partenaires se ressemblent davantage que ce que le hasard présagerait, ce qui laisse des traces dans le génome de leurs enfants. Des scientifiques de l’Unil ont développé une nouvelle méthode perm...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
artificialscience.bsky.social @artificialscience.bsky.social · 20/08/2026
Claude designed protein binders for 14 of 15 targets. The most capable protein designer in commercial use is also the one most restricted in virology. Here's what that means for pandemic preparedness. #Claude #Binders #Pandemicpreparedness #Virology artificialscience.org/2026/08/clau...
artificialscience.org
Claude can design proteins, but it can't help you study viruses — Artificial Science
Anthropic published a wet-lab-validated protein binder result on 18 August 2026, then disclosed an 11-month biosecurity classifier gap. The two stories together explain why the world's most capable pr...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Biodiversity Meets Data @bmd-project.eu · 19/08/2026
The #Datarium exhibition, organised by @sib.swiss, had its official opening event on 12 August 2026 🎉 👉 Read more: www.sib.swiss/news/datariu... Check out the BMD poster live at Rotonde du Mont-Blanc, Geneva until 30 August or online at datarium.ch/en/environme... 🌱
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Rob Waterhouse @rmwaterhouse.bsky.social · 13/08/2026
Officially launched today in #Geneva, #Datarium is a free open-air exhibition explaining #bioinformatics and its little-known contributions to society through engaging #Swiss examples. www.sib.swiss/news/datariu...
sib.swiss
Datarium: the data science behind health, environmental and AI advances
Officially launched today in Geneva, Datarium is a free open-air exhibition explaining bioinformatics and its little-known contributions to society through engaging Swiss examples. The exhibition was ...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 13/08/2026
From @danstowell.mastodon.social.ap.brid.gy & colleagues in @plos.org #Computational #Biology | Twelve quick tips for applying deep learning to animal sounds | #Bioinformatics #ML #Acoustics #Sounds #Education #PLOSCBQT | 🧬🖥️🧪🔓 ⬇️ journals.plos.org/ploscompbiol...
journals.plos.org
Twelve quick tips for applying deep learning to animal sounds
Deep learning is transforming the study of animal sound, enabling the automated identification of species, individuals, behaviors, and ecological patterns from large collections of recordings. While b...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 13/08/2026
From @jfy133.genomic.social.ap.brid.gy @maxibor.bsky.social @christinawarinner.bsky.social et al., in @plos.org #Computational #Biology | De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag | #Education #Genomics #Microbes | 🧬🖥️🧪🔓 ⬇️ journals.plos.org/ploscompbiol...
journals.plos.org
De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag
Author summary Advancements in genomic sequencing analyses are increasingly allowing researchers to reconstruct the genomes of microbial ‘dark matter’—those microbial species that are difficult to iso...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
EMBL Events @events.embl.org · 31/07/2026
Get your calendars, because the new 2027 EMBL Annual Poster has arrived: s.embl.org/2027-poster Whether you'd like to enhance your skills in a practical course or engage with the latest research at one of our conferences, we've got you covered. See you at EMBL in 2027! 🙌 #LifeSciences #EMBL
The image depicts the 2027 EMBL Annual Poster featuring the new events programme for 2027. On the left side is a colorful banner, on the right is the list of events sorted by month
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Biodiversity Meets Data @bmd-project.eu · 30/07/2026
Meet our partners: @lifewatcheric.bsky.social 🌿🇪🇺 LifeWatch ERIC will lead the design, development and operation of BMD’s Biodiversity Explorer and maintain the BMD data catalogue. They will also host the BMD training materials. 📚 Their research here: bmd-project.eu/resources/li... #BMDpartners
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Rob Waterhouse @rmwaterhouse.bsky.social · 27/07/2026
Coming to #Geneva for @eccb-europe.bsky.social ? Register by August 14th eccb2026.org #GenevaLovesData
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Jenna Norton @jenna-m-norton.bsky.social · 22/07/2026
Remember when NIH Director Jay Bhattacharya said there were no banned words and NIH Program Officers were making them up? Here’s the proof he lied: apnews.com/article/cali... I know, Jay Bhattacharya lying is not news. But it’s still really validating to have the admission.
apnews.com
White House admits it used keywords to kill billions worth of California research grants
Federal agencies that terminated more than a thousand research grants at the University of California last year admitted that they used keywords related to diversity, gender, vaccine hesitancy and COV...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Le Temps @letemps.ch · 23/07/2026
OPINION. En adoptant le Programme d’allègement budgétaire 2027, le parlement veut couper dans la formation et la recherche au moment où la Suisse aurait le plus besoin de ses compétences pour affronter les transitions....
l.letemps.ch
Sacrifier le savoir, c’est renoncer aux transitions
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
BF Francis Ouellette @bffo.bsky.social · 21/07/2026
From @biologyjoe87.bsky.social & colleagues in @plos.org #Computational #Biology | Eight quick tips for data-model integration in ecology | #Bioinformatics #Education #DataModel #Ecology #PLOSCBQT CC/ @ppalagi.bsky.social | 🧬🖥️🧪🔓 ⬇️ journals.plos.org/ploscompbiol...
journals.plos.org
Eight quick tips for data-model integration in ecology
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
The Guardian @theguardian.com · 20/07/2026
Al-altered images on birdwatching forums putting research at risk
theguardian.com
Al-altered images on birdwatching forums putting research at risk
Experts warn increase in enhanced photos on birding platforms creating fake sightings, threatening credibility of tool used by scientists For many birdwatchers, recording a species outside its normal range is the holy grail. In the UK, the discoveries often make national headlinesThe western reef heron, for example, usually found in Africa and southern Europe, spotted in a seaside town in north Wales in June, which was widely celebrated on birding forums. But a new scourge is threatening to disrupt the fun: AI slop. Continue reading...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 20/07/2026
Because of course, AI is breaking citizen science 😠 #citizenscience #genAI #iNaturalist www.theguardian.com/environment/202…
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
unil.bsky.social @unil.bsky.social · 16/07/2026
L'été en replays
dlvr.it
L'été en replays
Que regarder à la télévision par ces chaudes soirées d'été ? La Faculté des lettres vous recommande 3 émissions auxquelles ont participé des membres de notre institution, qui abordent des sujets d'histoire et de société. Bon visionnage !
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Jason “Obstacle to Progress” Williams @jasonwilliamsny.bsky.social · 16/07/2026
Starting in about one hour, the first #ISMB @iscb.bsky.social town hall event for pathogen-related datasets. Come learn about new tools and approaches, and share in an interactive discussion on what the community needs to keep pace. Jefferson East/11:00am. #ismb20206 pathogendatanetwork.org/network
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
ELIXIR Europe @elixir-europe.org · 16/07/2026
📈 During 2025, ELIXIR supported over 140 research publications and preprints. This support 🙌 included ELIXIR-funded internal projects, funding received by ELIXIR Nodes at the national level and funding through ELIXIR-coordinated EU projects. Read the news: loom.ly/vAMQF8I #OpenScience
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Stephen Turner @stephenturner.us · 15/07/2026
Ten quick tips to SNIFF out sustainable and secure scientific software journals.plos.org/ploscompbiol... 🧬💻🧪
journals.plos.org
Ten quick tips to SNIFF out sustainable and secure scientific software
Modern computational biology depends heavily on open-source software tools, analysis pipelines, and containerized workflows developed and shared by the research community. While there is extensive gui...
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
allie10.bsky.social @allie10.bsky.social · 28/06/2026
Climate.us 💥🌪️☀️❄️🌬️💦💧🌊🍀
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
PETA @peta.org · 29/06/2026
@nypost.com is breaking down PETA Asia's newest investigation into the cruelty hidden behind badger hair makeup, paint, & shaving brushes. An eyewitness visited eight badger farms & documented disturbing abuse at every single farm. What they found will shock you ⤵️ www.peta.vg/47ya
peta.vg
Exclusive | Major retailers stop selling brushes made with badger hair
Major retailers, including Neiman Marcus, Ulta, Kohl’s and Michael’s, quietly stopped selling brushes made from badger hair over the past couple of months, The Post has learned.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
PETA @peta.org · 29/06/2026
A badger may have suffered for your brush 💔 An eyewitness went undercover to expose where some paint, makeup, and shaving brush bristles come from. What they found was so disturbing that we had to blur the footage. See it to believe it!
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
ELIXIR Europe @elixir-europe.org · 29/06/2026
🎉 ELIXIR 2025 Annual Report is out! The annual report highlights 🙌 infrastructure development and international collaboration during the second year of the 2024–28 Scientific Programme: 👇 Read on to discover more about #ELIXIR in 2025: loom.ly/DvTxKHY
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Torsten Schwede @torstenschwede.bsky.social · 22/06/2026
“Plato observed that a state characterized by significant wealth disparity is not a state at all but rather two states, the one of poor, the other of rich men, and they are living on the same spot and always conspiring against one another.” D. Williams @nytimes.com www.nytimes.com/2026/06/21/o...
nytimes.com
Opinion | Elon Musk Confirms Ancient Concerns About the Superrich
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Chappatte Cartoons @chappatte.bsky.social · 22/06/2026
La semaine de #canicule record débute ! - © Chappatte dans La Tribune Dimanche 👉 www.chappatte.com
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
unil.bsky.social @unil.bsky.social · 22/06/2026
Projets de recherche interdisciplinaire de la FBM : découvrez les récipiendaires
dlvr.it
Projets de recherche interdisciplinaire de la FBM : découvrez les récipiendaires
La Commission de la recherche de la Faculté de biologie et de médecine (CRec-FBM) et le Décanat de la Faculté de biologie et de médecine (FBM) de l'Unil adressent toutes leurs félicitations aux trois équipes de récipiendaires du fonds pour les projets de recherche interdisciplinaire.
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Reposted by Patricia Palagi 🐙🐱🦒-🇨🇭🇧🇷
Chappatte Cartoons @chappatte.bsky.social · 02/06/2026
La guerre se poursuit au #Liban - © Chappatte dans Le Temps, Genève @letemps.ch 👉 chappatte.com/fr/images/la...
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