iiinova — where your digital self keeps evolving

PathoGenOmics Lab @pathogenomics.bsky.social · 02/10/2026

Aun estáis a tiempo de ver el espectáculo de danza contemporánea y circo que ha puesto en marcha Álvaro Chiner. Nos cuenta lo sucedido durante una gran epidemia de forma exquisita y sugerente. Vale mucho la pena.

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PathoGenOmics Lab @pathogenomics.bsky.social · 25/09/2026

Participaremos en el espectáculo de arte y ciencia VirArt organizado por Álvaro Chiner en @teatremusical.bsky.social. @gvafisabio.bsky.social @dicv.csic.es @cipfvalencia.bsky.social

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PathoGenOmics Lab @pathogenomics.bsky.social · 15/09/2026

Want to analyse bacterial genomes yourself? ONE-BAG 2026 at @i2sysbio.es takes you from raw reads to interpretable phylogenies, with hands-on training in QC, SNPs, assembly, annotation, pangenomes, outbreaks, AMR and typing. Learn more: onebag.uv.es

onebag.uv.es

ONE-BAG 2026 | Bacterial Genomics for One Health

From raw reads to a tree you can defend. Four days in Valencia, free for EOHA full members and 300 euro for everyone else. Applications close 1 October 2026.

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Paula @paururo.bsky.social · 27/06/2026

Back from #ESM2026 in Verona, grateful and proud. Two of my research contributions, co-authored with Mireia @pathogenomics.bsky.social, were presented. Honoured to receive the Travel Award and Best Oral Presentation. Thank you, Mireia, for your guidance and support. @i2sysbio.es @esmyco.bsky.social

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European Society of Mycobacteriology @esmyco.bsky.social · 22/06/2026

🏅 Congratulations to Margo Diricks, winner of the Gertrud Meissner Award at #ESM2026! We're delighted to celebrate Margot's outstanding contribution to mycobacteriology, recognising the excellence and dedication she brings to our field. So well deserved 👏 #ESM2026 #ESMyco

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PathoGenOmics Lab @pathogenomics.bsky.social · 23/06/2026

Bouke's innovative thinking, rigorous pursuit of knowledge and colaborative way of conducting research make this recognition incredibly well-deserved. Thank you for your outstanding contributions to the field and your unique ability to inspire the mycobacterial community.

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Centro de Investigación Biomédica en Red (CIBER) @ciberisciii.bsky.social · 20/04/2026

Personal #CIBERBBN en la @upv.es desarrolla un biosensor rápido y de bajo coste para detectar #tuberculosis activa 🔎🔬 Más info en ➡️ www.upv.es/noticias-upv... @cipfvalencia.bsky.social

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CSIC @csic.es · 09/04/2026

🔬 El #CSIC e #ISGLOBAL firman un acuerdo de colaboración para reforzar la investigación en salud ➡️ Ambas entidades promoverán proyectos de investigación y asesoramiento, así como seminarios y jornadas especializadas 👉 tiny.cc/2ll1101

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Paula @paururo.bsky.social · 02/04/2026

🧬 pathotypr is now on Bioconda! @pathogenomics.bsky.social conda install -c bioconda pathotypr Alignment-free lineage classification & drug resistance genotyping from WGS. Works with any pathogen bring your own SNP markers. ⚡ Rust, ~1s/sample 🖥️ CLI + GUI 🔗 github.com/PathoGenOmics-Lab/pathotypr

bioconda.github.io

Package Recipe 'pathotypr' — Bioconda documentation

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PathoGenOmics Lab @pathogenomics.bsky.social · 02/04/2026

Un momento dulce compartiendo la mona de Pascua con los compañeros. Tradiciones que unen y alegran el día. @i2sysbio.es @paururo.bsky.social @ahmig.es

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PathoGenOmics Lab @pathogenomics.bsky.social · 30/03/2026

In benchmarking, Pathotypr showed very high concordance with phylogenetic lineage assignment and achieved very fast analysis speeds, making near real-time TB genomic surveillance feasible even on standard desktop hardware. It is available as both a command-line tool and an easy desktop GUI.

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PathoGenOmics Lab @pathogenomics.bsky.social · 30/03/2026

The toolkit integrates multiple modules in one workflow: Train / Predict for lineage classification, Split FASTQ / Classify for genotyping from reads or assemblies, and Match Ref to identify the closest reference genome for each sample.

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PathoGenOmics Lab @pathogenomics.bsky.social · 30/03/2026

Pathotypr supports all 14 currently recognised MTBC lineages, including human-adapted lineages L1-L10 and animal-adapted clades A1-A4. It also incorporates recently described diversity such as L10, helping standardise TB genomic surveillance across settings.

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PathoGenOmics Lab @pathogenomics.bsky.social · 30/03/2026

Excited to share Pathotypr with @paururo.bsky.social, our open-source toolkit for rapid, harmonised MTBC lineage assignment and drug-resistance genotyping from both genome assemblies and raw reads. @i2sysbio.es. tool github.com/PathoGenOmic.... preprint: doi.org/10.64898/202...

github.com

GitHub - PathoGenOmics-Lab/pathotypr: Genome classificator using machine learning and SNP markers.

Genome classificator using machine learning and SNP markers. - PathoGenOmics-Lab/pathotypr

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Paula @paururo.bsky.social · 24/03/2026

🔬 Hoy es el Día Mundial de la Tuberculosis. Esta imagen refleja algo que rara vez se ve: las horas dentro de un BSL-3, la bioseguridad, el trabajo silencioso detrás de cada avance. @i2sysbio.es @pathogenomics.bsky.social

Interior del laboratorio BSL-3 durante trabajo rutinario con muestras de tuberculosis

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Ana Conesa @anaconesa.bsky.social · 26/03/2026

The “curse of interdisciplinarity”: Fields like bioinformatics fall between the cracks in grant evaluation. 🧬 For bios: Too little mechanistic validation 🧮 For math: Not enough new theory 💻 For computing: “Just” applied computing Interdisciplinarity is essential, but evaluation hasn’t caught up.

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PathoGenOmics Lab @pathogenomics.bsky.social · 24/03/2026

🔬 World TB Day 2026 — Behind the mask, inside BSL-3. Our team works daily to understand M. tuberculosis evolution, resistance & transmission through genomics. TB still kills 1.25M people/year. Research matters. @i2sysbio.es #WorldTBDay #EndTB #Tuberculosis

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Ⓙⓐⓥⓘⓔⓡ🇵🇸🍉 Ⓑⓤⓒⓔⓣⓐ🇺🇦🇪🇺 @javierbuceta.bsky.social · 12/03/2026

El Instituto de Biología Integrativa de Sistemas celebra su décimo aniversario con un acto conmemorativo en el Parc Científic de la Universitat de València www.i2sysbio.es/communicatio... @i2sysbio.es

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PathoGenOmics Lab @pathogenomics.bsky.social · 11/03/2026

Happy Bioinformatics Day!🧬💻Celebrate the power of data for understanding life at every level. In @pathogenomics.bsky.social we combine experiments with bioinformatics to understand bacterial evolution, virulence, and infection dynamics. #SoyBioinformatica @paururo.bsky.social @ahmig.es @i2sysbio.es

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PathoGenOmics Lab @pathogenomics.bsky.social · 10/03/2026

@i2sysbio.es 10th Aniversary Celebration, science and fun!

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PathoGenOmics Lab @pathogenomics.bsky.social · 10/03/2026

Proud to celebrate 10th anniversary of @i2sysbio.es 🎉 Being part of a community dedicated to discovery, collaboration, and advancing science is truly inspiring. Grateful to contribute, learn, and grow alongside such passionate colleagues. Here’s to many more years of knwledge and impact! 🔬✨

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PathoGenOmics Lab @pathogenomics.bsky.social · 04/03/2026

¿Quieres un impulso a tu formacion investigadora🔬? En @i2sysbio.es ofertamos beca JAE Intro @amrhubcsic.bsky.social al. Plan formativo "Frenar la adquisición de resistencia en bacterias patógenas💊". 6 meses remuneración de 600 €/mes. Aplica antes del 10 marzo en www.convocatorias.csic.es/convoca/

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European Society of Mycobacteriology @esmyco.bsky.social · 01/03/2026

🚀 #ESM2026 registration is open! 46th Annual Congress of the European Society of Mycobacteriology. 📍 Verona, Italy | 🗓️ 22–25 June 2026 🔗 www.esmycobacteriology.eu/event-home

esmycobacteriology.eu

Current meeting | ESM

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PathoGenOmics Lab @pathogenomics.bsky.social · 26/02/2026

Useful tool from the PathogenOmics Lab thanks to @paururo.bsky.social: get_mnv v1.0.1 🧬

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Ⓙⓐⓥⓘⓔⓡ🇵🇸🍉 Ⓑⓤⓒⓔⓣⓐ🇺🇦🇪🇺 @javierbuceta.bsky.social · 13/10/2025

🚨JOB ALERT Dr. Buceta at @i2sysbio.es welcome applications for 36-month postdocs on: 👉 Mechanical markers of tissue dysfunction due to ageing – digital twins & machine learning Details here: fgcsic.es/convocatoria... 📩 Contact javier.buceta@csic.es to shape your proposal! @epimechfc.bsky.social

fgcsic.es

ComFuturo Fourth Edition: ComFuturo iAGE Call - FGCSIC

The Fundación General CSIC (FGCSIC) launches the fourth edition of its ComFuturo programme: ComFuturo iAGE, a postdoctoral initiative co-financed by the Marie Skłodowska-Curie Actions COFUND scheme of...

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PathoGenOmics Lab @pathogenomics.bsky.social · 16/10/2025

Come and join us in Valencia next January for the meeting of the Spanish Society of Evolutionary Biology. Deadline for abstracts October 22nd. sesbe2026.es/registration/

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Paula @paururo.bsky.social · 10/10/2025

Back from #MycoVLC2025 after presenting our M. tuberculosis work. Huge thanks to Mireia for stellar mentorship. Proud of my @pathogenomics.bsky.social mycolegas for standout posters. Energized to turn ideas into results. #TB #TBResearch @i2sysbio.es

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EvoMG Program @evomg-bcn.bsky.social · 12/10/2025

Then, we Mireia Coscollà ( @pathogenomics.bsky.social ), from I2SysBio ( @i2sysbio.es ) talked about compatibility between hosts in bacterial infections.

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Paula @paururo.bsky.social · 13/08/2025

From fàstic to fantastic population genetics with @pathogenomics.bsky.social :announcing Fstic a high-performance Rust CLI that computes N×N genetic distance matrices from VCFs or allele-frequency tables at scale. (fàstic=Valencian/Catalan for annoyance)Code: github.com/PathoGenOmic... @i2sysbio.es

github.com

GitHub - PathoGenOmics-Lab/fstic: Calculates pairwise distances between samples using alelle frequencies

Calculates pairwise distances between samples using alelle frequencies - PathoGenOmics-Lab/fstic

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I2SysBio @i2sysbio.es · 18/07/2025

El #I2SysBio (@csic.es - @uv.es) ha lanzado una serie de vídeos sobre los diferentes grupos de investigación en este centro. El nuevo video es sobre el grupo Orquestación transcripcional del metabolismo vegetal de Tomas Matús @jtmatus.bsky.social 🎥🌐 youtu.be/43V4MOtAf4k?... 🧪🧬🖥️ 🌾🌱🍇 #plantscience

youtu.be

Interview of Tomás Matus, PI of the Transcriptional Orchestration of plant metabolism group

YouTube video by Institute for Integrative Systems Biology I2SysBio

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PathoGenOmics Lab @pathogenomics.bsky.social · 14/07/2025

Spanish Society Evolutionary Biology meeting January 2026 in the botanical Garden ‪@uv.es‬ in Spain. Registration 200-350€. Preliminary program with confirmed keynote speakers: sesbe2026.es/programme/. Abstract submission until September 15th. sesbe2026.es/abstract/. Come to Valencia and join us!

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Miguel 💻🧬 @ahmig.es · 30/06/2025

VIPERA v1.2.1 is here!! 🐍🐍🐍 Our workflow for SARS-CoV-2 intra-patient evolution analysis now fully supports Snakemake 8/9 (with dedicated CI tests), BIONJ trees, richer reports, added config parameters, modular Snakefiles and more! 🧪👉 github.com/PathoGenOmics-Lab/VIPERA

github.com

GitHub - PathoGenOmics-Lab/VIPERA: A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis - PathoGenOmics-Lab/VIPERA

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PathoGenOmics Lab @pathogenomics.bsky.social · 27/05/2025

‪@ahmig.es‬ presented the poster "Expanding the scope of evolution reporting and analysis: from intra patient dynamics to outbreaks" at MCEB 2025 in Granada thanks to the funding @bcbhubcsic.bsky.social and ‪@ageinves.bsky.social‬.

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Miguel 💻🧬 @ahmig.es · 20/05/2025

Just back from MCEB 2025 in Granada! I presented our year-long work expanding VIPERA🐍 to help us better track pathogen evolution, here at @pathogenomics.bsky.social - @i2sysbio.bsky.social. I learned so much and returned full of ideas! Thanks to @bcbhubcsic.bsky.social for funding my attendance! 🧪

A photo of a group of people with the Alhambra in the back

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I2SysBio @i2sysbio.es · 10/05/2025

Today, I2SysBio researchers were busy with #scienceoutreach activities at #Expociencia. Here are photos of the Pathogenomics lab @pathogenomics.bsky.social explaning in a playful way how our immune system works 🧬🖥🦠🧫🧪

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Paula @paururo.bsky.social · 10/05/2025

Nuestro 4to año superado con creces, #expociencia2025 @pathogenomics.bsky.social @i2sysbio.bsky.social

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PathoGenOmics Lab @pathogenomics.bsky.social · 04/04/2025

🔬 Beca JAE Intro en Bioinformática Desarrolla HaploScope, una pipeline híbrida (Illumina + Nanopore/PacBio) para reconstrucción de haplotipos bacterianos y virales en @i2sysbio.bsky.social Código: JAEINT25_EX_1603 🗓️ Solicita hasta 2 mayo 🔗 rb.gy/c6c8p2 #Bioinformática #Nextflow #JAEIntro #CSIC #TFM

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PathoGenOmics Lab @pathogenomics.bsky.social · 25/03/2025

HubBCB-01 @CSIC.es. Impacto del microbioma respiratorio humano en la introducción de un nuevo patógeno. IP Mireia Coscolla (I2SYSBIO, Valencia) Cinco meses, cinco mensualidades de 600€, 20 horas/semana. Nota media de grado al menos 7. Si grado terminado, matriculado master bioinformática o similar.

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UCL-TB @ucltb.bsky.social · 24/03/2025

Today: Online link for World TB Day symposium 9-5 GMT: lshtm.zoom.us/j/92519123639. Programme information at ucl.ac.uk/tb/events/wo...

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PathoGenOmics Lab @pathogenomics.bsky.social · 24/03/2025

🧬 Estudiamos la genética tras la compatibilidad patógeno-hospedador en tuberculosis (laboratorios BSL2/BSL3). Dale play al vídeo: ¡que lo contagioso sea la ciencia! #EndTB #DíaMundialTuberculosis, Desde @csic.es, @ptisg.bsky.social, @i2sysbio.bsky.social y @paururo.bsky.social

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PathoGenOmics Lab @pathogenomics.bsky.social · 24/03/2025

🦠 ¿Amigos o enemigos? La infección por tuberculosis depende de la compatibilidad patógeno-hospedador. Si encajan bien, la bacteria prospera; si no, fracasa. ¡Cuestión de genética! #EndTB #DíaMundialTuberculosis

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PathoGenOmics Lab @pathogenomics.bsky.social · 24/03/2025

🦠 Friends or foes? Tuberculosis infection depends on host-pathogen compatibility. If they're genetically compatible, bacteria thrive; if not, they fail. It’s all about matching genes! #EndTB #WorldTBDay

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PathoGenOmics Lab @pathogenomics.bsky.social · 24/03/2025

🔬 On World TB Day, we show you how we study tuberculosis genomes safely in BSL2/BSL3 labs to understand and stop its spread. Hit play—spread science, not TB! #EndTB #WorldTBDay @i2sysbio.bsky.social & @paururo.bsky.social,

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PathoGenOmics Lab @pathogenomics.bsky.social · 03/03/2025

Visit to I2SysBio by ESTALMAT, the programme of mathematical talent promotion www.i2sysbio.es/communicatio...

i2sysbio.es

i2sysbio -

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I2SysBio @i2sysbio.es · 23/02/2025

#ESTALMAT is a project of the Spanish Royal Academy of Sciences @raciencias.bsky.social for detection and encouragement of mathematical talent in 12-13 years old students. They visited our research institite to learn about #DNA 🧪💻🧬 #outreach @javierbuceta.bsky.social @pathogenomics.bsky.social

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PathoGenOmics Lab @pathogenomics.bsky.social · 22/11/2024

Check out our tools for genomic analisis at github.com/PathoGenOmic... • get_MNV: Reclassifies SNVs as MNVs and predicts amino acid changes. • snpick: SNP extraction for large alignments. • VIPERA: Workflow for SARS-CoV-2 evolution. • mycolorsTB: R color palette for M. tuberculosis.

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PathoGenOmics Lab @pathogenomics.bsky.social · 21/11/2024

And PathoGenOmics lab re-publish a video interview highlighting the problem of drug resistance in Mycobacterium tuberculosis youtu.be/VqSWUJmP01w

youtu.be

Las Resistencias, Día Mundial de la Tuberculosis 2023

YouTube video by Paula Ruiz

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Maria Dzunkova @dzunkovam.bsky.social · 20/11/2024

New bioinformatic tool SNPick for detection of SNPs developed at @i2sysbio.bsky.social @pathogenomics.bsky.social 🦠🔬🧫🧬🖥

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