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AbstractMotivation. The Encyclopedia of Domains (TED) provides domain annotations for proteins in the AlphaFold Protein Structure Database (AFDB) using a c

Protein language models have become essential tools for engineering novel functional proteins. The emerging paradigm of family-based language models makes use of homologous sequences to steer protein ...

Abstract. The AlphaFold Protein Structure Database (AFDB; https://alphafold.ebi.ac.uk), developed by EMBL–EBI and Google DeepMind, provides open access to

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Protein structure prediction breakthroughs, notably AlphaFold2 and ESMfold, have led to an unprecedented influx of computationally derived structures. The AlphaFold Protein Structure Database now prov...

Protein structure prediction breakthroughs, notably AlphaFold2 and ESMfold, have led to an unprecedented influx of computationally derived structures. The AlphaFold Protein Structure Database now prov...

This work applies diffusion models to conditional molecule generation and shows how they can be used to tackle various structure-based drug design problems

On the deep and dark seafloor, a cryptic and yet untapped microbial diversity flourishes around hydrothermal vent systems. This remote environment of difficult accessibility exhibits extreme condition...

Researchers say the social-media platform — an alternative to X — offers more control over the content they see and the people they engage with.

The AlphaFold Protein Structure Database (AFDB) contains more than 214 million predicted protein structures composed of domains, which are independently folding units found in multiple structural and ...

Sensitive search of rapidly growing protein sequence databases for evolutionary information requires