Reposted by 🦋 MiLilith 🦋Stefan Pöhlmann @snpoehlm.bsky.social · 24/09/2026🦠 SARS-CoV-2 SURVEILLANCE RESOURCES AROUND THE WORLD An updated collection of useful dashboards and websites for tracking COVID-19, SARS-CoV-2 variants and wastewater surveillance. Bookmark/share. 🧵 25229 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 14/10/202666 airport SARS-CoV-2 sequences from incoming travelers were uploaded today, collected Sept 21-30, and 26 (39.4%) were PJ.2.1. 20/30 (66.7%) sequences from Latin American travelers were PJ.2.1. Seems likely that PJ.2.1 is rapidly sweeping across the entire Western hemisphere. 16222 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 09/10/2026Large upload from Ontario yesterday, providing some striking revelations about the evolution of PJ.2.1. First, there is yet another strikingly divergent branch of PJ.2.1. This isn't one variant: it's four. More and more, this resembles the emergence of BA.1/2/3. What is happening? 1/ 718773 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 06/10/2026Since Aug 31, 12.8% (10/78) airport surveillance seqs from international travelers to the US have been PJ.2.1. 45% (9/20) from Latin American travelers in that period are PJ.2.1: 4 from Cuba & 1 each from Chile, Colombia, the DR, Ecuador, & Guatemala. PJ.2.1 is the fastest variant in the world now. 14622 0
Reposted by 🦋 MiLilith 🦋WIRED @wired.com · 02/10/2026DHS agents not only tracked and intimidated people observing ICE activity in Maine, but stored information about them in a Palantir-built database, newly unsealed court filings say.wired.comICE Has Been Dumping Protester Photos Into a Palantir DatabaseDHS agents not only tracked and intimidated people observing ICE activity in Maine, but stored information about them in a Palantir-built database, newly unsealed court filings say. 9321041308 0
Reposted by 🦋 MiLilith 🦋🗽LOLGOP🗽 @lolgop.bsky.social · 03/10/2026"The doctrine that the strong dominate the weak is the doctrine of our enemies." 59228 0
Reposted by 🦋 MiLilith 🦋Abdul El-Sayed @abdulelsayed.bsky.social · 28/09/2026Keep the data centers away from our Great Lakes. 20882212262 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 29/09/2026By far the most commonly mutated CD8 T cell-epitope site in chronic infections is ORF1a:T1638, and mutations there are now far more common in circulating lineages than they ever have been. In one case (RF.5.4.1) it's paired with another major HLA*01:01 escape mutation: ORF1b:T730I. 1226 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 26/09/2026Phenomenal 🧵 (& paper) about why Omicron is less efficient at infecting the lung than previous variants. Initial ideas on this were proven wrong, & it's been an utter mystery since. Stuart, doing work on one else is doing, has largely explained it & revealed vital aspects of the SARS-2 life cycle. 05125 0
Reposted by 🦋 MiLilith 🦋c0nc0rdance @c0nc0rdance.bsky.social · 23/09/2026Video from Maura Hennelly captures her sunbeam snake named 'Vespira' in all her glory. Sunbeam snakes (genus Xenopeltis) are non-venomous snakes from SE Asia that kill small prey (frogs, rodents) by constricting. They burrow through soft dirt or leaf litter in humid jungles. (📷:@maurahennelly IG) 431283250 0
Reposted by 🦋 MiLilith 🦋Get To Know Nature @gettoknownature.bsky.social · 22/09/2026I love how Jewelweed flowers look like a big mouth, in this case chomping on a bumble bee. It’s almost like an oddly shaped Pac-Man #birds 🌿 #BeeButt #NativePlants 719926 0
Reposted by 🦋 MiLilith 🦋Mark Faghy @profmarkfaghy.bsky.social · 22/09/2026📢 Our paper is published in Oxford Open Immunology: The ERASE_LC trial evaluated whether a 5-day course of intravenous remdesivir is feasible, safe, and acceptable for people living with Long COVID. This is the first study to specifically examine remdesivir as a treatment for LC. 17324 0
Reposted by 🦋 MiLilith 🦋Adam Jewell Photography @adamjewell.bsky.social · 19/09/2026Here’s a double rainbow after an intense storm over what I believe is Wolf Mountain in the Two Medicine section of Glacier National Park in Northern Montana. #twomedicine #glacier #rainbows #nationalparks #photography #nature #gnp #wilderness #eastglacier Prints—> adamjewell.com/featured/two... 1305 0
Reposted by 🦋 MiLilith 🦋Barry Cliver @barrycliver.bsky.social · 19/09/202674° North off the coast of Western Greenland. #greenland #travel #landscapephotography #photography #arctic 2171 0
Reposted by 🦋 MiLilith 🦋AndyBeavisPhoto @andybeavisphoto.bsky.social · 12/09/2026In Senja, Norway, at the iconic Segla Mountain in late afternoon light. #landscape #Landscapephotography #Norway #Senja #sunset #mountain 1513 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 11/09/2026Great thread on the PJ.2.1 variant situation, what we do & do not know, & where it stands now. Worth emphasizing that a recent Yunlong Cao preprint found PJ.2.1 has very high ACE2 affinity, meaning that, like BA.2.75 or BA.2.86, it has plenty of space to acquire new Ab-evading spike mutations. 15926 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 20/08/2026I can finally reveal the rest of our World Cup surveillance. While we were working away on wastewater metagenomics, the other side of lung.fish was on the ground doing air sampling with team Canada. Preprint just out. www.medrxiv.org/content/10.6...lung.fishLungfishDedicated to improving environmental surveillance and tackling viruses through innovative detection strategies. 1237 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 12/08/2026The truth: getting Covid early in pregnancy can cause fetal brain hemorrhaging, w/direct detection of virus in the hemorrhages. This decreased when the UK approved vaccines for pregnant women—& increased when they removed the vax recommendation for pregnant women. Hugely overlooked finding. 1/3 49148 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 06/08/2026FYI, the most elevated viruses in the US last week were once again Parechovirus 6 and Coxsackievirus A9. Both are elevated nationwide. 1388 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 29/07/2026This is excellent. "The 'rogue AI' narrative helps obscure some pretty ugly truths.... Like the fact that OpenAI lost $38.5 billion last year, will likely never make a profit, & is facing total collapse or acquisition as an AI bubble looms." Also, a vision of an even dumber near future: 1/2 3159 0
Reposted by 🦋 MiLilith 🦋Dr. Jeroen W.P. Wijnendaele @drdragases.bsky.social · 27/07/2026Good grief, this hits home. 324138034874 0
Reposted by 🦋 MiLilith 🦋Danielle Beckman @daniellebeckman.bsky.social · 27/07/2026Our review covering the major Neuroinflammatory events in Long Covid is finally online and open access here! www.nature.com/articles/s41... #NeuroCovid #LongCovid 🤓🧠 213867 0
Reposted by 🦋 MiLilith 🦋Sho Hoshino @shophotography.bsky.social · 27/11/2024Witnessing phenomena like this is why I can never stop capturing landscapes. 381051112 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 21/07/2026This chronic-infection variant now has a name: PJ.2.1. You can see how divergent it is from other current lineages in the @neher.io/Roemer BA.2.86 tree below. It originated in Ontario but has been detected in wastewater by @solidevidence.bsky.social in New York, Florida, Alabama, & Utah I think. 1/3 26023 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 18/07/2026The full paragraph this quote comes from is gold, like the rest of the book. "Who was the first man to look at a house full of objects and immediately assess them only in terms of what he could get for them in the market? Surely, he can only have been a thief." - David Graeber 112247 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 16/07/2026Great thread here. Really looking forward to digging into this paper by @mghafari.bsky.social, @spyroslytras.bsky.social, and Sanni Översti. 1102 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 16/07/2026ORF6 is a SARS-2 protein that shuts down traffic between the nucleus & cytoplasm in host cells, inhibiting host mRNA export & immune responses. But in all variants since early 2023, ORF6's abilities are hampered by the ORF6:D61L mutation. Two newish ORF6 observations.... 1/15 14515 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 10/07/2026We performed a metagenomic sprint this week. Samples that arrived on Tues were prepped overnight, loaded on a 10B plate Wed (25 h run), and output today. The same summer viruses continue to surge: Parechovirus 6, Rhinovirus A54, Parainfluenzavirus 3 and Coxsackievirus A9. 0394 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 06/07/2026@ryanhisner.bsky.social I did some scavenging to see if it was in any other sewersheds in the last month. Found 3 more, 2 more from NYC (different sewersheds) and 1 from Utah. I can't say it's taking off, but it moving around pretty quickly. 25714 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 05/07/2026World Cup virus wastewater update. While I wait ‘patiently’ for the sequences from this week (which was supposed to be done already), here is a summary of the 4 lineages that have been on the rise since the games began across our 43 sampling sites. 1/ 26521 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 04/07/2026A mysterious, unusually diverse saltation lineage descended from KP.3.1.1 (last seen early 2025) has circulated at a low level for ~8 months in Ontario (see 🧵 on next post). Seemed a local anomaly, but @solidevidence.bsky.social just spied a weird spike in NYC wastewater—& it's the same one! 1/14 48923 0
Reposted by 🦋 MiLilith 🦋Carl Quintanilla @carlquintanilla.bsky.social · 04/07/2026“.. Members of the group Patriot Front ride the metro on the 250th anniversary of U.S. independence in Washington, D.C.” @reuters.com 149078682941 0
Reposted by 🦋 MiLilith 🦋Adam Cohen (My Personal Views Only) @axidentaliberal.bsky.social · 04/07/2026“Those who profess to favor freedom, and yet depreciate agitation,are men who want..the ocean without the awful roar..This struggle may be a moral one; or it may be a physical one; or it may be both..but it must be a struggle. Power concedes nothing without a demand” Frederick Douglass America 250 18023 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 04/07/2026I was wrong. What I thought was a cryptic lineage from NYC was actually a new highly divergent JN.1 (branched off about a year ago). Probably derived from a persistent infection. BTW, it was in 2 different sewersheds, and the most recent one was 40% of the signal. 1408 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 03/07/2026This is kind of weird. A new cryptic showed up in two different NYC sewersheds this month. Low coverage. RBD piece is: 403K-405N-408S-417N-435S-439N-445P-446T-450D-452K-455S-456L. Also a deletion at 621-622. 1/ 25111 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 26/06/2026Successfully appealed the biorxiv rejection and today our paper (co-authors @darrenmartin.bsky.social & Ravi Gupta) is posted. The paper's too long to do a single summary thread, but I'll do a cursory overview here, then more detailed subsection threads later. 1/16 www.biorxiv.org/content/10.6...biorxiv.orgCoevolving Mutations in Chronic SARS-CoV-2 InfectionsThe SARS-CoV-2 pandemic has been marked by two outstanding features that have had major impacts on global public health: the repeated emergence and growth of highly divergent saltation variants with n... 711743 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 24/06/2026This is so awesome. Here's a different view of the last 6 months of wastewater metagenomics from 41 sites (color coded by site). We were able to predict the sewershed each sample came from based solely on the virome present with 99% accuracy. 1316 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 24/06/2026Cheat sheet for those wondering what the various new lineages @siamosolocani.bsky.social refers to are, or who (like me) often forget or get them mixed up. My ability to make this is utterly dependent on @angieshinrichs.bsky.social's invaluable Usher tree work. TA.1 still too new to be included. 1347 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 19/06/2026First World Cup wastewater metagenomics had nothing out of the ordinary. Parainfluenzavirus 3 and a couple enteric viruses are high (typical for early summer). The most exotic virus we saw was a Largemouth Bass Bunyavirus. Waiting 'patiently' for data from the second plate. 14915 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 19/06/202655 of the last 75 outbreaks of H5N1/HPAI/avian bird flu in the US affecting at least 1000 birds have occurred in counties in Northeast Indiana with large Amish populations: Lagrange, Elkhart, Adams, and Jay. I do not know if there is a connection here, but it seems worth looking into. 1/4 25815 0
Reposted by 🦋 MiLilith 🦋Isabel, booonyavirus wonk @isabelott.bsky.social · 19/06/2026An interesting thread from a month ago that predicted exactly what we’re seeing in the reflecting pool now (peeling up, prolific microbial activity) 52948997 0
Reposted by 🦋 MiLilith 🦋Alyssa Harad @alyssaharad.bsky.social · 19/06/2026Reagan forced everyone out of the psych wards and on to the streets so I guess this is some kind of demonic 1980s full circle moment. 3278 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 17/06/2026Probably the most spectacular rainbow I've ever seen showed up earlier today outside my house. Crazy how much brighter it is beneath the rainbow than above it. 641733 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 15/06/2026Here is the first round of games by host city. Which match will have the most exotic viral pathogen? And what viral family will it be from? 0285 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 15/06/2026BA.1/NB.1.8.1 recombinant uploaded today from Portugal, collection date January 2026. There were two BA.1 collected in Dec 2025 in Michigan uploaded last month as well. BA.1 not entirely finished with us yet, over 4 years after it disappeared from circulation. 45415 0
Reposted by 🦋 MiLilith 🦋Ryan Hisner @ryanhisner.bsky.social · 15/06/2026Another fascinating study from the Gideon Schreiber lab. When BA.1 emerged, I saw its spike RBD mutations & thought Q498R looked familiar. It was, but not because I'd seen it in a sequence. It was because this lab predicted it months before BA.1 showed up. 1/37 threadreaderapp.com/thread/14638... 15610 0
Reposted by 🦋 MiLilith 🦋Solid Evidence @solidevidence.bsky.social · 14/06/2026We released our latest metagenomics preprint. I’m really excited about this study. The unofficial title is ‘conquer the dark matter, volume 1’ 1/ www.medrxiv.org/content/10.6...medrxiv.orgA genome-resolved view of the wastewater RNA viromeSequencing-based wastewater surveillance is emerging as an important tool in pathogen-agnostic threat detection, potentially enabling early identification before capture through clinical surveillance ... 55814 0
Reposted by 🦋 MiLilith 🦋MemePerfect 5.1 @memeperfect51.bsky.social · 13/06/2026#KennedyCenter 114820 0
Reposted by 🦋 MiLilith 🦋Danielle Beckman @daniellebeckman.bsky.social · 10/06/2026“If the cells are frequently turning over but there is still viral persistence, what other plausible explanations are there for this other than replication?” That's a very good question someone asked, let's do a thread about VIRAL PERSISTENCE in #LongCovid to cover this! (1/10) 410849 0