Over the past century, the generalized Lotka–Volterra (GLV) model has grown from a mathematical curiosity to a cornerstone of theoretical ecology. Here we celebrate the enduring legacy of Lotka and Vo...

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Resource supply is generally considered a dominant driver of microbial diversity. Here, using a four-species bacterial consortium, we asked whether...

Transposon-insertion sequencing (Tn-seq) couples transposon mutagenesis with next-generation sequencing to identify the transposon insertion site for thousands of mutants in parallel. It is a powerful...

Understanding the mechanisms that promote native seedling establishment in disturbed ecosystems is key to improving the biodiversity and function of landscape restorations. Over seven growing seasons...

Here the authors propose guidance on the process of establishing a state-of-the-art collection of microorganisms, including project planning, strain deposition and the naming of new taxa.

A simulation-based approach was developed to design synthetic microbial communities (SynComs) by simplifying complex microbial communities through metabolic modelling. The simulation-based approach w...

In a process known as phenotypic heterogeneity or phenotypic variation, bacteria can produce distinct phenotypes within an isogenic population in response to shifting environmental conditions. Noise i...

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Heterotrophic bacteria utilize organic carbon as a source of energy and material for growth. The balanced allocation of carbon between these two processes, termed growth efficiency, is a key physiolog...

Defined microbial communities (also known as synthetic communities) are showing promising results for plant health but are lacking an efficient lab to field transition. This is the due to limited know...

Anthocyanins and betalains are plant pigments produced through different biosynthetic pathways and are generally considered mutually exclusive. We examine claims of their co-occurrence, arguing that ...

In this review, Lakehal et al. chart the evolution of root systems, discussing key innovations in root morphology and the regulatory mechanisms that enabled land plants to adapt. They argue that crop ...

Oxygen is one of the most important environmental variables affecting microbial activity and composition, but is often difficult to measure in situ. We developed a tool, OxyMetaG, that leverages diffe...

Abstract. Microbial communities are often more species-rich than predicted from classical ecological models. The high levels of coexistence observed in nat

Microbial ecologists are increasingly turning to machine learning (ML) models to better identify and predict meaningful biological patterns and relationships in molecular microbial community data (inc...

The updated OrthoFinder v3 software boosts accuracy and scalability in phylogenetic orthology inference with massive and diverse datasets.

Compositional and functional readjustments of the rhizobacterial community in avocado induced by Phytophthora root rot.

Abstract. Bacteria have evolved complex protein systems known as bacterial weapons to inhibit or kill their competitors. These bacterial weapons are a remarkably diverse arsenal that influence the com...

Phages modulate plant microbiomes through bacterial lysis and by equipping bacteria with auxiliary genes through lysogeny. In this Forum, we highlight the underappreciated role of phages in plant heal...

Découvrez le voyage fascinant du microbiote des graines : et si ce monde invisible était la clé pour remplacer les pesticides ? Puis, interrogeons nous sur…

Marker-gene microbiome surveys systematically under-sample rare taxa, causing alpha diversity metrics to reflect dominance rather than true richness. This conceptual mismatch can lead to misleading e...