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Matt Doran

@matthdoran.bsky.social
173 followers 258 following 15 posts

Structural biologist and post-doc in the Brown Lab @harvardmed. Formerly at the Lehman lab @BUMedicine.

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Reposted by Matt Doran
Michelle Fry @myfry.bsky.social · 02/10/2026
1/ 🧵 Two classic mitochondrial pathways the TCA cycle and OXPHOS are taught as linked but distinct pathways. I’m happy to share our new work out in @cp-cell.bsky.social showing that in Acanthamoeba they're physically linked—with a TCA enzyme incorporated in ATP synthase. www.cell.com/cell/fulltex...
cell.com
Acanthamoeba ATP synthase structure reveals the TCA cycle is tethered to OXPHOS
Acanthamoeba castellanii, a pathogenic amoeba, belongs to an evolutionary branch distinctly removed from humans and fungi. Cryo-EM of the organism’s ATP synthase enzyme using raw mitochondrial lysates...
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Reposted by Matt Doran
Haixia Zhou @haixia.bsky.social · 10/09/2026
First day here and I brought a paper. Three years of cryo-FIB-ET on human airway cells, nine proteins identified and two new PCD genes at the end of it. Grateful to the teams in Munster (Omran Lab), Boston (@alanbrownhms.bsky.social, Hawkins Lab) and Geneva (@centriolelab.bsky.social).
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Matt Doran @matthdoran.bsky.social · 22/05/2026
Please apply to be part of our team! Working in the Brown lab is a fantastic opportunity with great people!
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Matt Doran @matthdoran.bsky.social · 10/11/2025
This was a wonderful collaboration with Sophia Fochler, Eva Gluenz, @zephyris-science.bsky.social, @alanbrownhms.bsky.social, and more analyzing a mountain of data. We are also grateful for the support through a dual NSF and Swiss NSF grant.
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Matt Doran @matthdoran.bsky.social · 10/11/2025
Want to know more without the sports analogy? Check out the full story on bioRxiv www.biorxiv.org/content/10.1...
biorxiv.org
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Matt Doran @matthdoran.bsky.social · 10/11/2025
We also knocked out individual doublet microtubule subunits, revealing which structural elements are important for movement. Together, our work provides a new framework for understanding how diverse molecular “rowers” coordinate ciliary motility.
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Matt Doran @matthdoran.bsky.social · 10/11/2025
Next, we systematically deleted each dynein gene and analyzed how these knockouts altered flagellar movement. The results were surprising: each dynein distinctly impacted motility, but not necessarily in the ways predicted from earlier studies.
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Matt Doran @matthdoran.bsky.social · 10/11/2025
Using Leishmania as a model, we determined the cryo-EM structure of the doublet microtubule to pinpoint the position of each dynein. This gave us a detailed map of where every “rower” sits on the ciliary “boat.”
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Matt Doran @matthdoran.bsky.social · 10/11/2025
In an eight-person rowing boat, each rower contributes to movement but also has a unique role: balancing, powering, or setting the rhythm and pace. In our latest collaborative work we asked – do the eight dynein “rowers” in #cilia and #flagella operate in the same way?
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Reposted by Matt Doran
Yi-Wei Chang @yiweichang.bsky.social · 15/05/2025
Excited to share our new @science.org paper! Led by postdocs Ruchao Peng and Xin Xu, we used cryo-EM/ET to reveal the influenza ribonucleoprotein complex structure and its strand-sliding mechanism for RNA synthesis, paving the way for new antivirals. www.science.org/doi/10.1126/...
science.org
Molecular basis of influenza ribonucleoprotein complex assembly and processive RNA synthesis
Influenza viruses replicate and transcribe their genome in the context of a conserved ribonucleoprotein (RNP) complex. By integrating cryo–electron microscopy single-particle analysis and cryo–electro...
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Reposted by Matt Doran
Sven Lange @sven-m-lange.bsky.social · 29/04/2025
How do cells keep their cilia “clean” and functional? Our new study uncovers a conserved mechanism for retrieving polyubiquitinated proteins from #cilia – a process essential for cellular signaling and health. #cellbiology #ciliopathy #ubiquitin #IFT 🧵👇 1/n
biorxiv.org
A conserved mechanism for the retrieval of polyubiquitinated proteins from cilia
The temporospatial distribution of proteins within cilia is regulated by intraflagellar transport (IFT), wherein molecular trains shuttle between the cell body and cilium. Defects in this process impair various signal-transduction pathways and cause ciliopathies. Although K63-linked ubiquitination appears to trigger protein export from cilia, the mechanisms coupling polyubiquitinated proteins to IFT remain unclear. Using a multidisciplinary approach, we demonstrate that a complex of CFAP36, a conserved ciliary protein of previously unknown function, and ARL3, a GTPase involved in ciliary import, binds polyubiquitinated proteins and links them to retrograde IFT trains. CFAP36 uses a coincidence detection mechanism to simultaneously bind two IFT subunits accessible only in retrograde trains. Depleting CFAP36 accumulates K63-linked ubiquitin in cilia and disrupts Hedgehog signaling, a pathway reliant on the retrieval of ubiquitinated receptors. These findings advance our understanding of ubiquitin-mediated protein transport and ciliary homeostasis, and demonstrate how structural changes in IFT trains achieve cargo selectivity. ### Competing Interest Statement The authors have declared no competing interest. Sara Elizabeth O'Brien Trust Postdoctoral Fellowship awarded through the Charles A. King Trust Postdoctoral Research Fellowship Program, , 8460873-01 Richard and Susan Smith Family Foundation, https://ror.org/05j95n956, National Institute of General Medical Sciences (NIGMS), , R01GM141109, R01GM143183
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Matt Doran @matthdoran.bsky.social · 13/03/2025
Finally this work wouldn’t be possible without the team in the Brown lab @alanbrownhms.bsky.social
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Matt Doran @matthdoran.bsky.social · 13/03/2025
This was a fantastic collaboration with @ruizhangmt.bsky.social, Richard Wheeler, and Eva Gluenz. Check out the paper for more!
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Matt Doran @matthdoran.bsky.social · 13/03/2025
It is also important to highlight that this work was made possible by funding through multiple NIH and NSF grants. These funding mechanisms are vital for biomedical research.
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Matt Doran @matthdoran.bsky.social · 13/03/2025
Our strategy of combining structural analysis with comprehensive genetic knockout, promises to continue uncover the mechanisms that control flagella-based motility.
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Matt Doran @matthdoran.bsky.social · 13/03/2025
We also observe trypanosomatid-specific axoneme specializations. One example is the B-tubule ponticulus structure, which was first observed nearly 60 years ago! We find that the lumen-spanning structure is made up of three components, whose periodicity is established by a filamentous MIP.
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Matt Doran @matthdoran.bsky.social · 13/03/2025
Using CRISPR, we knocked out each of our identified proteins and tested the mutant swimming speed. Our analysis found that the doublet is surprisingly resilient to individual MIP knockout. However, we show that the evolutionarily conserved inner junction is uniquely sensitive to knockout.
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Matt Doran @matthdoran.bsky.social · 13/03/2025
Our structure revealed a highly specialized doublet containing 51 microtubule inner proteins (MIPs). Once resolved, we used Leishmania as a model to test the contribution of each MIP to motility.
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Matt Doran @matthdoran.bsky.social · 13/03/2025
I am super excited to share our latest work on the structures of doublet microtubules from trypanosomatid parasites, the causative agents of leishmaniasis, Chagas disease, and African sleeping sickness. tinyurl.com/48sh3xn5
tinyurl.com
Evolutionary adaptations of doublet microtubules in trypanosomatid parasites
The movement and pathogenicity of trypanosomatid species, the causative agents of trypanosomiasis and leishmaniasis, are dependent on a flagellum that contains an axoneme of dynein-bound doublet micro...
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