Reposted by Richard WheelerPhilippe Bastin's Lab @bastinlab.bsky.social · 18/05/2026Flagella can be assembled by IFT without the canonical heterotrimeric kinesin! Grab a cup of tea or coffee and follow a story that started 25 years ago 1137
Richard Wheeler @zephyris-science.bsky.social · 26/02/2026Do you use or analyse trypanosomes, leishmania, etc. genomes? You might find this useful - we've got loads of genomes, but an annotation gap for mRNAs, this tool aims to fix that.biorxiv.org 011
Richard Wheeler @zephyris-science.bsky.social · 18/02/2026Want to computationally analyse a genome's-worth of protein localisations? Have data for 4.5 million cells at your fingertips using this Python tool to access TrypTag.org data www.biorxiv.org/content/10.6... (we're out of beta and releasing on time 🎂)biorxiv.org 012
Reposted by Richard WheelerUK Cilia and Centrosome Network @ukcilianetwork.bsky.social · 17/02/2026A brief communiqué on the temporary funding pause recently announced by UKRI detailing a summary of the main changes can now be found on the network website. www.cilianetwork.org.uk/news/4687/uk...cilianetwork.org.ukUKRI Funding PauseMembers of the UK Cilia and Centrosome Network have prepared the following briefing on the UKRI funding pause collating publicly available information:n Background: UKRI has been given a £38.6 billion four-year budget (2026–2030) by the government [1]. This will be divided into 4-streams (buckets) to align with national priorities. Curiosity driven research ... 002
Reposted by Richard WheelerEMBL-EBI @ebi.embl.org · 17/02/2026The AlphaFold Database, jointly developed with Google DeepMind, now contains datasets from specialist communities. This includes rich datasets for microbes, viruses & parasites associated with tropical diseases. Explore the new datasets in the AlphaFold Database. www.ebi.ac.uk/about/news/u...ebi.ac.ukAlphaFold Database welcomes community datasetsLatest AlphaFold Database update adds high-value datasets for microbial and viral proteins, generated by specialist communities 15925
Richard Wheeler @zephyris-science.bsky.social · 17/02/2026Better parasite protein structure predictions, now on the official @EMBL-EBI Alphafold database. www.ebi.ac.uk/about/news/u...ebi.ac.ukAlphaFold Database welcomes community datasetsLatest AlphaFold Database update adds high-value datasets for microbial and viral proteins, generated by specialist communities 141
Reposted by Richard WheelerDerek Lowe @dereklowe.bsky.social · 04/02/2026Welcome, piles of slop filling up the journals with clouds of useless wordy garbage. Case in point:science.orgWhat the Literature is Filling Up With 88134
Reposted by Richard WheelerImperial Life Sciences @imperiallifesci.bsky.social · 04/02/2026New PNAS study identifies ESBX, a protein controlling which surface coat gene is active in sleeping sickness parasites - key to immune evasion. @tiengwe-tryplab.bsky.social @zephyris-science.bsky.social @fariatrypslab.bsky.social www.imperial.ac.uk/news/article...imperial.ac.ukScientists reveal how sleeping sickness parasites control their surface coatResearchers have revealed how parasites hide thousands of antigens behind a single-colour coat and how disrupting this control could make the parasit... 0189
Richard Wheeler @zephyris-science.bsky.social · 03/02/2026It was very interesting contributing to this, fascinating to go head to head with cutting edge AI models. www.nature.com/articles/s41...nature.comA benchmark of expert-level academic questions to assess AI capabilities - NatureHumanity’s Last Exam, a multi-modal benchmark at the frontier of human knowledge, is designed to be an expert-level closed-ended academic benchmark with broad subject coverage. 110
Richard Wheeler @zephyris-science.bsky.social · 19/12/2025Hot take. Stop AI-generated peer reviews by encouraging journals run the paper through a few LLMs to check for basic factual and statistical errors. 000
Richard Wheeler @zephyris-science.bsky.social · 10/11/2025Check out this thread for a nice breakdown (with videos!) of some of our questions about how dyneins generate a beat, all from our new preprint: 061
Richard Wheeler @zephyris-science.bsky.social · 08/11/2025Very excited to share this one! Our comprehensive structure, genetics and biophysics dissection of which flagellar dyneins and other proteins are needed for flagella to beat and drive cells swimming behaviours: www.biorxiv.org/content/10.1... 3166
Richard Wheeler @zephyris-science.bsky.social · 08/10/2025tryptag.org update now done... Now with gene annotations from the latest genome, better links to source data (on BioImage Archive www.ebi.ac.uk/biostudies/B...), fixed missing images, and better cell cycle stage examples (selected using github.com/zephyris/try...). Any problems, let me know.tryptag.orgTrypTag is a genome-wide database of the subcellular protein localisation in the unicellular parasite Trypanosoma brucei. The main paper describing this resource is Billington et al., 2023. 010
Richard Wheeler @zephyris-science.bsky.social · 26/09/2025I'm working on some server changes for tryptag.org, you might see missing data (particularly missing images)... But don't worry, it will all be up again soon!tryptag.org 010
Richard Wheeler @zephyris-science.bsky.social · 20/08/2025After a hiatus, the discoba lineage-optimised Alphafold2 structure predictions are back up! Get your improved Trypanosoma and Leishmania structure predictions here. Try out the Google Colab iPython notebook (and let me know if you have any problems) colab.research.google.com/github/zephy...colab.research.google.comGoogle Colab 010
Reposted by Richard WheelerMax Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 27/05/2025Watch the related Science Sketch video: youtu.be/uBpPMyVTj5c?..., created by @marionamec.bsky.socialyoutu.beMolecule Disarms Cellular Stress Granules Linked to ALSYouTube video by MPI-CBG 075
Reposted by Richard WheelerMax Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 27/05/2025A team @mpi-cbg.de from @hymanlab.bsky.social & the @edinburghup.bsky.social (Richard Wheeler group) has identified the molecule lipoamide that can prevent the formation of pathological stress granules - protein-rich condensates associated with cellular stress and ALS. www.mpi-cbg.de/news-outreac...mpi-cbg.deMolecule Disarms Cellular Stress Granules Linked to ALSDiscovery by researchers in Dresden and Edinburgh points to new understanding of the onset of ALS. 2236
Richard Wheeler @zephyris-science.bsky.social · 27/05/2025Very cool new study about how multiple cilia self-coordinate for swimming by @micromotility.bsky.social www.biorxiv.org/content/10.1...biorxiv.orgDynamics and emergence of metachronal waves in the ciliary band of a metazoan larvaBoth natural and synthetic ciliary arrays exhibit diverse coordination patterns. Proper coordination of cilia is essential for the normal physiology of many organisms, from single cells to humans. Yet... 031
Richard Wheeler @zephyris-science.bsky.social · 16/05/2025Thank you @dereklowe.bsky.social for featuring our work in In the Pipeline (www.science.org/content/blog...). It's been 6 year journey, but we finally have a target, a mechanism and a paper! www.nature.com/articles/s41...science.orgA Condensate-Modifying Compound, Put to the Test 000
Richard Wheeler @zephyris-science.bsky.social · 15/05/2025Having spent an afternoon developing some models with Google AI Studio, Ted Chiang seems more prescient than ever. It's only about a page, worth reading right now! www.nature.com/articles/350...nature.comCatching crumbs from the table - NatureIn the face of metahuman science, humans have become metascientists. 020
Reposted by Richard WheelerHyman Lab @hymanlab.bsky.social · 14/05/2025Hiro's paper is out! @hiro-cg5445.bsky.social Collaboration and Tour de Force with Richard Wheeler @zephyris-science.bsky.social and many other coauthors. Big congratulations and thank you to anyone involved! www.nature.com/articles/s41...nature.comSmall-molecule dissolution of stress granules by redox modulation benefits ALS models - Nature Chemical BiologyUechi et al. found that a small-molecule lipoamide dissolves stress granules (SGs) by targeting SFPQ, a redox-sensitive disordered SG protein, alleviating pathological phenotypes caused by amyotrophic... 2208
Richard Wheeler @zephyris-science.bsky.social · 14/05/2025Small molecule targeting intrinsically disordered protein domains to help neurodegeneration, really great to finally have this collab with @hymanlab.bsky.social out! www.nature.com/articles/s41...nature.comSmall-molecule dissolution of stress granules by redox modulation benefits ALS models - Nature Chemical BiologyUechi et al. found that a small-molecule lipoamide dissolves stress granules (SGs) by targeting SFPQ, a redox-sensitive disordered SG protein, alleviating pathological phenotypes caused by amyotrophic... 061