Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 01/10/2026Microbial ecology of shallow groundwater ecosystems www.nature.com/articles/s41... #jcampubsnature.comMicrobial ecology of shallow groundwater ecosystems - Nature Reviews MicrobiologyIn this Review, Karwautz and Griebler examine the microbial communities found in shallow groundwater and aquifers, exploring their diversity, functional roles and dynamic interactions with adjacent te... 0104
Reposted by 🇨🇦 Marc StrousBas E. Dutilh @bedutilh.bsky.social · 25/09/2026Are you into sequence graphs and looking for a PhD position in viral ecology? Join the VEO Group in beautiful Jena, Germany! 👇👇 jobs.uni-jena.de/jobposting/a...jobs.uni-jena.deDoctoral Researcher in Bioinformatics: Quantifying quasispecies: Tool development and applications 044
Reposted by 🇨🇦 Marc StrousSimonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇nature.com 1612578
Reposted by 🇨🇦 Marc StrousNichole Broderick, PhD @nabroderick.bsky.social · 16/09/2026Society journals support the scientific community, including advocacy for funding and science policies. $ to for profit journals just ends up in another shareholders yacht. 0126
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 09/09/2026Alternative genetic codes in bacteria and archaea identified with a fast k-mer–based algorithm www.pnas.org/doi/abs/10.1... #jcampubspnas.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 0159
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 08/09/2026Improved ancestral genome reconstruction using a learned gene-content grammar www.biorxiv.org/content/10.6... #jcampubs 131
Reposted by 🇨🇦 Marc StrousBas E. Dutilh @bedutilh.bsky.social · 07/09/2026Join us and be part of the VirusREvolution! Study the link between the environment and phage host range in soil and groundwater systems 👇👇 0310
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 02/09/2026The 100 Diatom Genomes Project journals.plos.org/plosbiology/... #jcampubsjournals.plos.orgThe 100 Diatom Genomes ProjectThis Community Page presents the 100 Diatom Genomes Project, which aims to sequence the genomes and transcriptomes of 100 diatom species across major lineages, life forms and ecological strategies. Th... 0146
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 02/09/2026Structural basis for catalytic and inhibitory divergence between archaeal and bacterial ammonia monooxygenases www.biorxiv.org/content/10.6... #jcampubs 053
Reposted by 🇨🇦 Marc StrousArvind Ravikumar @arvindpawan1.bsky.social · 18/08/2026A geologist and a systems engineer walk in to a bar... ...and start arguing about whether we can actually pump enough CO2 underground to hit net zero. That's more or less how this paper got started with @hdaigle.bsky.social. Read on to find more: iopscience.iop.org/article/10.1...iopscience.iop.orgCan we sequester carbon fast enough? growing disconnect between models and realityCan we sequester carbon fast enough? growing disconnect between models and reality, Daigle, Hugh, Ravikumar, Arvind P 922864
Reposted by 🇨🇦 Marc StrousMike Jetten @msmjetten.bsky.social · 29/07/2026Great goodbye present: Special Issue of Environmental Microbiology on #Methane & #Nitrogen cycling edited by @cuwelte.bsky.social& @marcstrous.bsky.social enviromicro-journals.onlinelibrary.wiley.com/hub/journal/... 154
Reposted by 🇨🇦 Marc StrousASM @asm.org · 31/07/2026Synthetic biology is advancing how scientists study early microbial life. Their findings could revolutionize how we think about Earth’s earliest residents—and those that exist today. asm.org/articles/202...asm.orgSynthetic Biology Sheds Light on Microbial Evolution | ASM.orgSynthetic biology is advancing how scientists study early microbial life. Their findings could revolutionize how we think about Earth’s earliest residents—and those that exist today. 094
Reposted by 🇨🇦 Marc StrousDebnath Ghosal @debnathghosal.bsky.social · 12/06/2026New paper alert!! We just discovered a new filament system that is widespread exclusively within CPR bacteria! www.biorxiv.org/content/10.6.... Short thread below. 🦠🔬🚀biorxiv.orgA Novel Pilus System in Candidate Phyla Radiation BacteriaThe Candidate Phyla Radiation (CPR) represents a bacterial superphylum estimated to include between 15–50% of all bacterial species, yet CPR bacteria remain challenging to culture and have been primar... 25525
Reposted by 🇨🇦 Marc StrousEmil Ruff @emilruff.bsky.social · 04/06/2026This years ISSM is in Vienna from Aug 30 - Sept 4, the early bird deadline is 15 June. As a premier conference in subsurface microbiology, the ISSM features exciting sessions and excellent keynote speakers. Spread the word, see you there. issm2026.univie.ac.at #deeplife #microbiome #subsurfaceissm2026.univie.ac.atissm conference 2026 vienna 12th issm conference12th ISSM COnference Vienna: Subsurface microbiology plays a critical role in shaping Earth's ecosystems, driving biogeochemical processes, and addressing critical environmental challenges. ISSM provi... 032
Reposted by 🇨🇦 Marc StrousMaliheh Mehrshad @mehrshmali.bsky.social · 04/06/2026🔬 We have an open PhD position at SLU Uppsala! We're looking for a curious & driven PhD student to join the #ECOPHARM project funded by @kawresearch.bsky.social and investigate plasmid-dependent phages in aquatic ecosystems. Pls share with anyone who might be interested! www.slu.se/en/about-slu...slu.seDiversity of Plasmid-Dependent Phages in Aquatic Ecosystems | slu.seSLU - Science and Education for Sustainable Life 1412
🇨🇦 Marc Strous @marcstrous.bsky.social · 04/06/2026I guess as scientists we should all create more content for these channels... maybe an objective for my next sabatical... www.nature.com/articles/d41...nature.comThe future of science communication is not an article like thisResearchers and science publishers need to seize the opportunity offered by the drastic shifts in the way news is produced — one reason Nature has joined TikTok. 001
Reposted by 🇨🇦 Marc StrousMike Jetten @msmjetten.bsky.social · 30/05/2026Tack så mycket for a fantastic goodbye symposium, lecture & party with a large number of past & present PhD & post doc honoring with their present. A memory to be cherished 4ever 🥰 & best #microbiology department at @ribesresearch.bsky.social ever! @cuwelte.bsky.social @marcstrous.bsky.social et al 1121
Reposted by 🇨🇦 Marc StrousMike Jetten @msmjetten.bsky.social · 28/05/2026Thank you for A very special Goodbye gift by @cuwelte.bsky.social & @marcstrous.bsky.social et al: A special issue of my favorite #environmental #microbiology journal. Microbial #Methane & #Nitrogen cycling under the loupe enviromicro-journals.onlinelibrary.wiley.com/journal/1462... 1105
Reposted by 🇨🇦 Marc StrousÁkos T Kovács @evolvedbiofilm.bsky.social · 11/05/2026COMMBAT: a web platform for exploring expression control of biosynthetic gene clusters @narjournal.bsky.social from @sebarigali.bsky.social With @gillesvanwezel.bsky.social @marnixmedema.bsky.social academic.oup.com/nar/advance-...academic.oup.comCOMMBAT: a web platform for exploring expression control of biosynthetic gene clustersAbstract. Bacterial genomes contain thousands of biosynthetic gene clusters (BGCs) responsible for the production of structurally diverse natural products 0249
Reposted by 🇨🇦 Marc StrousMart Krupovic @mkrupovic.bsky.social · 11/05/2026With Eugene Koonin, we wrote a rather comprehensive review on the origin, evolution and organization of the #virosphere. We describe all 10 viral realms and the logic behind them, and so much more. Check it out! comptes-rendus.academie-sciences.fr/biologies/ar... 1256130
Reposted by 🇨🇦 Marc StrousMartin Polz @polzlab.bsky.social · 06/05/2026Very excited to share our new paper out in Nature. Congrats to Xiaoqian (Annie) Yu and all the coauthors. www.nature.com/articles/s41...nature.comGenome-wide sweeps create ecological units in the human gut microbiome - NatureGenome-wide selective sweeps commonly occur in the human gut microbiome and can spread across the world within decades to produce epidemic-like population structures. 28243
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 07/05/2026Accessible Gibbs energy at metabolic activation limits long-term cell growth www.biorxiv.org/content/10.6... #jcampubs 043
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 07/05/2026The heterogeneous selection landscape of genome evolution in prokaryotes www.pnas.org/doi/10.1073/... #jcampubspnas.orgThe heterogeneous selection landscape of genome evolution in prokaryotes | PNASEvolution of prokaryote genomes appears to be defined by the interplay of selection for genome streamlining, deletion bias, and selection for funct... 0167
Reposted by 🇨🇦 Marc StrousKristina Jonas @krijonas.bsky.social · 06/05/2026We’re hiring! 🇸🇪🔬 Tenure-track Assistant Professor in Prokaryotic Microbiology (molecular focus) at Stockholm University. Supportive environment + strong molecular research 👉https://su.varbi.com/en/what:job/jobID:921526/type:job/where:125/apply:1 Please share!!su.varbi.comBiträdande lektor i prokaryot mikrobiologi med inriktning mot molekylära processerInstitutionen för molekylär biovetenskap, Wenner-Grens institut (MBW) bedriver experimentell grundforskning inom molekylär cellbiologi, integrativ biologi och infektions- och immunbiologi. Forsknin 03037
🇨🇦 Marc Strous @marcstrous.bsky.social · 07/05/2026www.nature.com/articles/d41...nature.comThe nine-to-five PhD: mere myth or an achievable goal?Can you squeeze your graduate programme into a 40-hour working week? These 13 current and former PhD candidates reveal their top time-management tips. 010
Reposted by 🇨🇦 Marc StrousMegan Sorensen @messorensen.bsky.social · 30/04/2026Interested in working on the evolution of photosynthetic endosymbioses? Come join us! I have 2 open positions in my new group @cemess.bsky.social in Vienna 3yr postdoc info: tinyurl.com/4emkjpn4 4yr PhD info: tinyurl.com/mtxmsjpy Apply by 1st June! Please share/repost #Protists #Symbiosis #PhD 27580
Reposted by 🇨🇦 Marc StrousAmelia Rotaru @ameliarotaru.bsky.social · 22/04/20268 more days left to apply for this 3-year postdoc position. Please repost! The position offers a lot of freedom to test new ideas about how archaea and bacteria communicate & sense the extracellular environment. 1920
Reposted by 🇨🇦 Marc StrousRoland Hatzenpichler @environmicrobio.bsky.social · 14/04/2026Yet another functional group that is not as restricted as we thought for 25 years. This is an important reminder that microbes are metabolically more diverse than we give them credit and yet another reminder that 16S rRNA surveys are ignorant about metabolism. Just bc you detect some ANME =/= AOM. 0115
Reposted by 🇨🇦 Marc StrousSophien Kamoun @kamounlab.bsky.social · 13/04/2026I just published Don’t Perish! A Step-by-Step Guide to Writing a Scientific Paper (2026 edition) Great science deserves to be read—not buried under unclear writing. This is the updated 2026 edition of your favorite guide to writing scientific papers. medium.com/p/dont-peris...medium.comDon’t Perish! A Step-by-Step Guide to Writing a Scientific Paper (2026 edition)Great science deserves to be read — not buried under unclear writing. This is the updated 2026 edition of your favorite guide to writing… 28842
Reposted by 🇨🇦 Marc StrousAlex Crits-Christoph @acritschristoph.bsky.social · 10/04/2026An Asgard archaeon from a modern analog of ancient microbial mats (Current Biology) Beautiful microscopy of an Asgard archaeon, in the same family as Lokiarchaea, in syntrophy with a sulfate-reducing bacteria Very very nice paper we saw in preprint form: www.cell.com/current-biol... 47221
Reposted by 🇨🇦 Marc StrousElla Sieradzki @sieravirus.bsky.social · 09/04/2026Deadline is April 20th! Let’s get those viruses 01115
Reposted by 🇨🇦 Marc StrousMatthias C. Rillig @mrillig.bsky.social · 10/04/2026Moran et al. in Science Emergent predictability in microbial ecosystems www.science.org/doi/10.1126/...science.orgEmergent predictability in microbial ecosystemsA long-standing hypothesis of microbial ecology is that simple patterns might persist despite community complexity or even emerge because of it. However, the concept of “emergent simplicity” remains partly intuitive. Here, we defined emergent ... 0239
Reposted by 🇨🇦 Marc StrousJan Rosenow @janrosenow.bsky.social · 09/04/202612.7 million battery electric vehicles were sold globally in 2025. In 2010, the number was barely 10,000. In China, 1 in 2 new cars sold last year was electric. The transition is happening faster than almost anyone predicted. 26696230
Reposted by 🇨🇦 Marc StrousElla Sieradzki @sieravirus.bsky.social · 09/03/2026I'm hiring my first postdoc! Apply by 20/4/26, position #20443. Seeking an environmental microbiologist with experience in metagenomics (preferably viromics) and molecular biology. Experience with targeted metabolomics is a plus. international.au.dk/about/profil...international.au.dkPostdoc in Soil viral ecology - Vacancy at Aarhus UniversityVacancy at Department of Agroecology - Plant Pathology and Microbiology, Aarhus University 02326
Reposted by 🇨🇦 Marc StrousRoland Hatzenpichler @environmicrobio.bsky.social · 08/04/2026Again looking for (self)nominations of/by grad students and postdocs to give virtual talks (via zoom) in the fall seminar series of MSU's Thermal Biology Institute. Does >not< need to be on thermophiles. Email me! 045
Reposted by 🇨🇦 Marc StrousManuel Kleiner @manuelkleiner.bsky.social · 08/04/2026We evaluated quantification methods for #metaproteomics and found that area under the curve quantification (AUC) outperforms spectral counting. Importantly, using match between runs for AUC quantification results in lots of false detections and should not be used www.biorxiv.org/content/10.6...biorxiv.org 1103
🇨🇦 Marc Strous @marcstrous.bsky.social · 07/04/2026Hard to focus on my science with all the bad things happening in the world 140
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 06/04/2026Genomic and evolutionary factors influencing the prediction accuracy of optimal growth temperature in prokaryotes journals.asm.org/doi/full/10.... #jcampubs 043
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 07/04/2026New genetic codes in bacteria and archaea identified with a fast k-mer based algorithm www.biorxiv.org/content/10.6... #jcampubs 082
Reposted by 🇨🇦 Marc StrousEmil Ruff @emilruff.bsky.social · 07/04/2026Job Alert!!! - We are hiring a Postdoc for the NASA ICAR OxyMoRon program Join my lab at Marine Biological Laboratory and an international team of geomicrobiologists and geochemists. Details here, please share widely: recruiting.ultipro.com/MAR1033MBL/J... @mblscience.bsky.social #darkoxygen ⚒️🧪recruiting.ultipro.com 011
Reposted by 🇨🇦 Marc StrousBeate Kraft @beatekraft.bsky.social · 07/04/2026 📣We have 5 PhD positions in hadal biogeochemistry and microbial ecology at the Danish Center for Hadal Research: lnkd.in/eJ6rp_Rk. 📣 Deadline: 4 May 2026 Please share widely! fa-eosd-saasfaprod1.fa.ocs.oraclecloud.com/hcmUI/Candid...fa-eosd-saasfaprod1.fa.ocs.oraclecloud.comPhD positions in hadal biogeochemistry & microbial ecologyApplication deadline: 4 May 2026 at 23:59 hours local Danish time 0819
Reposted by 🇨🇦 Marc StrousMike Jetten @msmjetten.bsky.social · 04/04/2026Structural and functional study suggests DnfC is a putative glutamine amidotransferase in the dirammox pathway #heterotrophic #Nitrification www.sciencedirect.com/science/arti...sciencedirect.comStructural and functional study suggests DnfC is a putative glutamine amidotransferase in the dirammox pathwayMicrobial ammonia oxidation is essential for biogeochemical nitrogen cycling and wastewater treatment. Besides the well-studied nitrification and anae… 001
Reposted by 🇨🇦 Marc StrousCourtney Stairs @cstairs.bsky.social · 04/04/2026We tested the efficacy of semi-permeable capsules to capture protists from cultures and environmental samples using the Onyx from @atrandi.bsky.social. Tremendous effort from everyone in the lab and led by Marco Fantini and Nik Brask - check out the videos here: www.biorxiv.org/content/10.6...biorxiv.org 13116
Reposted by 🇨🇦 Marc StrousPhil Ewels @ewels.bsky.social · 02/04/2026Super excited to be launching two things today: #RustQC 🦀🧬 and rewrites.bio 🚀 I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵 seqeralabs.github.io/RustQC/seqeralabs.github.ioWelcome to RustQCFast quality control tools for sequencing data, written in Rust. 38536
🇨🇦 Marc Strous @marcstrous.bsky.social · 01/04/2026Should have posted this yesterday. Art and Idea by Marike, my love, who is not on Bsky. 000
Reposted by 🇨🇦 Marc Strousharvardoeb.bsky.social @harvardoeb.bsky.social · 01/04/2026An exciting new study in PNAS led by postdoc Andrea Unzueta Martinez and Prof. @pgirguis.bsky.social lab shows that oysters coordinate with microbes living inside of them to build their hard shells! A game changer for understanding ocean resilience as waters become more acidic from #climatechangepnas.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 065
Reposted by 🇨🇦 Marc StrousManuel Kleiner @manuelkleiner.bsky.social · 27/03/2026I thought it was quite mind boggling to see that around 10% of the protein in a standard yeast based bread is actually yeast protein! Here our #metaproteomics analysis of microbial protein in fermented foods pubs.rsc.org/en/Content/A... Congratulations to first authors Laura Winkler and Ayesha Awanpubs.rsc.orgAssessing the diversity and functional profile of the “microbial proteome” in fermented foodsFermented foods are staples in diets worldwide and are known for their health benefits. Microorganisms are the key to fermented food production as they convert raw substrates into digestible, nutritio... 093
Reposted by 🇨🇦 Marc StrousJim Shaw @jimshaw.bsky.social · 27/03/2026Myloasm, our long-read metagenome assembler, is now published! w/ @mgmarin.bsky.social and @lh3lh3.bsky.social Very rewarding after > a year of development and countless hours thinking about assembly. Thanks to beta testers, Li lab, and reviewers who gave very helpful feedback. rdcu.be/famFjrdcu.beHigh-resolution metagenome assembly for modern long reads with myloasmNature Biotechnology - A long-read metagenome assembly method recovers circular and complete genomes better than existing tools. 410056
Reposted by 🇨🇦 Marc StrousCameron Thrash @jcamthrash.bsky.social · 23/03/2026ANIr-based methodology to determine if two sequence-discrete populations are identical and identify cosmopolitan prokaryotic populations academic.oup.com/ismecommun/a... #jcampubs 042
Reposted by 🇨🇦 Marc StrousFrank Melzner @frankmelzner.bsky.social · 19/03/2026Come work with us in Vienna and along European coasts! We look for a creative Postdoc (4year contract) in Evolutionary Genomics to cooperate with physiologists, ecologists, see: jobs.univie.ac.at/job/Postdoc-... Please share! @univie.ac.atjobs.univie.ac.atPostdoc marine evolutionary genomicsPostdoc marine evolutionary genomics 12114