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Lucie Etienne

@lucievirevolte.bsky.social
1.2K followers 1K following 30 posts

Researcher PI @CIRI_Lyon @CNRS @ENSdeLyon Functional evolution of virus-host interactions. Impact on cross-species transmissions. 🦇 🦍 🦠 🧬 🌳

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Lucie Etienne @lucievirevolte.bsky.social · 23/09/2026
🚨We are #recruiting our #bioinfo scientist in Comparative Genomics to characterize the evolution of mammalian innate immunity 🖥️🦠🦇 Join our team and project #ERC #FUNEVO ! @ciri-lyon.bsky.social @erc.europa.eu @cnrs-rhoneauvergne.bsky.social @ensdelyon.bsky.social ciri.ens-lyon.fr/teams/lp2l/j...
ciri.ens-lyon.fr
Research Engineer in Bioinformatics and Comparative genomics - ERC FUNEVO — Centre International de Recherche en Infectiologie
Comparative Genomics, Multi-Omics, and bioinformatics Method Development to Characterize the Evolution of Mammalian Innate Immunity (Contact: Lucie ETIENNE)
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The Ohainle Lab @ohainlelab.bsky.social · 10/09/2026
Very excited to share the first preprint from the Ohainle Lab at UC Berkeley! www.biorxiv.org/content/10.6...
biorxiv.org
CypA is a molecular barrier to HIV emergence from Eastern chimpanzees
Of the two lineages of lentivirus that endemically infect chimpanzees, only one has served as a source of infections in hu-mans. Using HIV-CRISPR screening, we identify factors that limit the replicat...
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François Rousset @francoisrousset.bsky.social · 08/09/2026
🚨 We are excited to share the first preprint of our lab ! We discovered an NADase enzymatic domain in bacterial immunity and in the human protein TEP1. www.biorxiv.org/content/10.6...
biorxiv.org
A widespread NADase domain links bacterial immunity with human TEP1
Recent discoveries on bacterial immunity have revealed that several protein domains involved in anti-phage defense are conserved in eukaryotes, such as SIRim, TIR, PNP and gasdermin. Bacterial immune ...
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Lucie Etienne @lucievirevolte.bsky.social · 31/08/2026
Insights into longevity & virus-driven adaptation from Myotis bat genomes International & fantastic collab. with @psudmant.bsky.social @denard.bsky.social Labs ! Major credit to the 2 leading scientists: Juan Vazquez & @lauterbur.bsky.social now with their own labs! You 2 rock! (1/n)
nature.com
Insights into longevity and virus-driven adaptation from Myotis bat genomes - Nature
Comparative and functional analyses of Myotis bats uncover unique patterns of adaptation in virus-interacting proteins and longevity-associated pathways, linking two hallmarks of bat biology.
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Lucie Etienne @lucievirevolte.bsky.social · 26/01/2026
📣 *Abstract submission by January 31st* "Host adaptations to viral infections” International Meeting May 10th-13th 2026 @cnrs.fr Station Biologique Roscoff, Brittany, France Register & Join us +amazing international speakers! #CNRS @cnrsbiologie.bsky.social #IRP www.insb.cnrs.fr/fr/evenement...
insb.cnrs.fr
Rapid host adaptations in response to viral infections
Viruses threaten all living organisms leading to molecular conflicts which have shaped hosts over evolutionary timescales. This meeting seeks to gather scientists from diverse disciplines including genomics, population genetics, innate immunology, virology, and beyond, to explore the evolution, diversity, molecular basis, and dynamics of these conflicts.
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Aida Andres @aidaandres.bsky.social · 27/01/2026
This will be a great meeting on host adaptation to viral infections. Abstract deadline approaching!
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Lucie Etienne @lucievirevolte.bsky.social · 26/01/2026
📣 *Abstract submission by January 31st* "Host adaptations to viral infections” International Meeting May 10th-13th 2026 @cnrs.fr Station Biologique Roscoff, Brittany, France Register & Join us +amazing international speakers! #CNRS @cnrsbiologie.bsky.social #IRP www.insb.cnrs.fr/fr/evenement...
insb.cnrs.fr
Rapid host adaptations in response to viral infections
Viruses threaten all living organisms leading to molecular conflicts which have shaped hosts over evolutionary timescales. This meeting seeks to gather scientists from diverse disciplines including genomics, population genetics, innate immunology, virology, and beyond, to explore the evolution, diversity, molecular basis, and dynamics of these conflicts.
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David Enard @denard.bsky.social · 23/01/2026
This is shaping up to be a great workshop. There is still time to register before the deadline! Please RT! #evolution #viruses #pathogens
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François Rousset @francoisrousset.bsky.social · 05/01/2026
A systematic analysis of STAND NTPases and their associated sensor domains in bacterial immunity 🤯 Mind-blowing work !
biorxiv.org
Diverse bacterial pattern recognition receptors sense the conserved phage proteome
Recognition of foreign molecules inside cells is critical for immunity in all domains of life. Proteins of the STAND NTPase superfamily, including eukaryotic nucleotide-binding oligomerization domain ...
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Peter Sudmant @psudmant.bsky.social · 14/01/2026
Registration deadline is fast approaching for the "Host adaptations to viral infections” Meeting May 10th-13th, 2026, at the CNRS Station Biologique de Roscoff, Brittany, France! JOIN US and the many amazing speakers! JOIN US! sites.google.com/berkeley.edu...
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Marie Monniaux @mariemonniaux.bsky.social · 13/01/2026
Have you ever heard that women have more chances than men of getting grants or positions in academia? Of course you have, and here are my personal views on this. With the shocking revelation that no, it is NOT TRUE ! (1/n)
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CIRI Lyon @ciri-lyon.bsky.social · 05/01/2026
Friendly reminder: “Host adaptations to viral infections” International Meeting May 10th to13th, 2026 Abstract submission is until January 31st, 2026, and pre-registration is already available: sites.google.com/berkeley.edu...
sites.google.com
viralinfectionmeeting
May 10-13, 2026 CNRS Station Biologique de Roscoff Brittany, France
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Lucie Etienne @lucievirevolte.bsky.social · 09/12/2025
Yay! Joy & excitement for the #science ahead & for our #team @ciri-lyon.bsky.social, who is getting @erc.europa.eu #Consolidator grant support to work on the FUNctional EVOlution of mammalian innate immunity #FUNEVO ! So thankful to #ERC and #everyone who contributed & provided support along the way
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CNRS Biologie @cnrsbiologie.bsky.social · 12/11/2025
#ResultatScientifique 🔎 Certains gènes antiviraux humains partagent des défenses communes avec les bactéries, révélant une convergence évolutive surprenante 🧬 ✍️ Alexandre Legrand et @lucievirevolte.bsky.social 📕 Nature Ecology and Evolution buff.ly/Su0EdiU
insb.cnrs.fr
Défenses immunitaires : une invention répétée au cours de l’évolution
Dans une étude publiée dans Nature Ecology and Evolution, des scientifiques montrent que les gènes SAMD9 et SAMD9L, a
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Lucie Etienne @lucievirevolte.bsky.social · 12/11/2025
📖Latest from the lab: Evo. characterization #antiviral #SAMD9/9L across #kingdoms🚶‍♀️🦍🦠🧫🖥️: ancient #convergence + #adaptations @natecoevo.nature.com Led by amazing Alexandre Legrand +major contributions by Rémi Demeure & Amandine Chantharath @ciri-lyon.bsky.social 1/n www.nature.com/articles/s41...
nature.com
Evolutionary characterization of antiviral SAMD9/9L across kingdoms supports ancient convergence and lineage-specific adaptations - Nature Ecology & Evolution
A search for analogues of the human SAMD9/9L antiviral genes identifies convergent evolution of this gene family in the bacterial and animal kingdoms, with species-specific and recent genomic signatur...
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David Enard @denard.bsky.social · 23/10/2025
Come join us in beautiful Britanny, France in May 2026 for a workshop that I am organizing with @lucievirevolte.bsky.social and @psudmant.bsky.social on Rapid host adaptations to infections: sites.google.com/berkeley.edu...
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François Rousset @francoisrousset.bsky.social · 04/09/2025
Super excited to receive the ERC starting grant to explore what phage-bacteria interactions can teach us on host-pathogen conflicts 🤩 I'm immensely grateful to my wonderful team and to present and past mentors 🙏
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Aude Bernheim @audeber.bsky.social · 24/07/2025
🦠🧍‍♀️From bacterial to human immunity. We report in @science.org the discovery of a human homolog of SIR2 antiphage proteins that participates in the TLR pathway of animal innate immunity. Co-led wt @enzopoirier.bsky.social by D. Bonhomme and @hugovaysset.bsky.social www.science.org/doi/10.1126/...
science.org
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Lucie Etienne @lucievirevolte.bsky.social · 07/03/2025
#standupforscience in Lyon! For science in France and in the world. In solidarity to our American colleagues.
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Stand Up For Science France @standupforscifr.bsky.social · 06/03/2025
Stand up for science Lyon / Grand Est : *Lyon* 16h00 – Rassemblement place des Terreaux. *Nancy* 10h00 – Débats. Amphithéâtre de la présidence Léopold, 34 cours Léopold, Nancy. 12-30-13h30 – ronde des obstiné·e·s. Place Stanislas, Nancy.
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IRIM @irim-life.bsky.social · 12/11/2024
We're hiring a Group Leader in Infection Biology! 🧬 Apply now to join us at the IRIM in Montpellier, and lead cutting-edge research in pathogen virulence, host-pathogen interactions or drug resistance, and shape the future of infection biology! 🦠🧫 Please RT (and follow us!) 🗓️ Deadline: Feb. 28, 2025
This contains the text of the detailed adThis contains the part 2 of the text of the ad
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CNRS Rhône Auvergne @cnrs-rhoneauvergne.bsky.social · 18/02/2025
#TalentsCNRS 🥉 | Découvrez la vidéo de Lucie Etienne, chercheuse au Centre international de recherche en infectiologie et lauréate de la médaille de bronze du @cnrs.fr en 2024 ! @cnrsbiologie.bsky.social @lucievirevolte.bsky.social @ensdelyon.bsky.social @inserm.fr www.youtube.com/watch?v=jE8b...
youtube.com
Lucie Etienne : décryptage des épidémies virales et des défenses immunitaires l TalentsCNRS
YouTube video by CNRS
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David Enard @denard.bsky.social · 18/02/2025
New paper with @lucievirevolte.bsky.social and @psudmant.bsky.social, led by Lucie Etienne and Amandine Le Corf. The sub-cellular localization of important innate antiviral factor GBP5 has evolved multiple times during bat evolution, with consequences for activity. www.biorxiv.org/content/10.1...
biorxiv.org
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Lucie Etienne @lucievirevolte.bsky.social · 17/02/2025
👀Our latest work, led by Amandine Le Corf fantastic PhD student alumni @biorxivpreprint.bsky.social . Great collab @denard.bsky.social @psudmant.bsky.social Genomic and functional #adaptations in #GBP5 highlight specificities of #bat antiviral innate #immunity 🦇🦠 www.biorxiv.org/content/10.1...
biorxiv.org
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Frederic Delsuc @freddelsuc.bsky.social · 07/02/2025
New @erc.europa.eu funded #ConvergeAnt paper on phylogenetics and transcriptomics of chitinase gene repertoires in convergent ant-eating mammals finally published in @genomebiolevol.bsky.social doi.org/10.1093/gbe/...
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Lucie Etienne @lucievirevolte.bsky.social · 07/02/2025
Congratulations @memerman.bsky.social !! So well deserved! Your mentorship is incredible - Thank you
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Lucie Etienne @lucievirevolte.bsky.social · 07/02/2025
We are looking for a #postdoc to discover cell-autonomous innate immune antiviral factors in mammals, based on newly-identified defense of prokaryotes! #EvoCure #comparativeImmunology #virology Please share @inserm.fr @ciri-lyon.bsky.social @cnrsbiologie.bsky.social ciri.ens-lyon.fr/teams/lp2l/j...
ciri.ens-lyon.fr
Postdoc position in comparative immunology and virology — Centre International de Recherche en Infectiologie
A 1-year renewable postdoctoral researcher position is available in our lab (PI: Lucie ETIENNE, CIRI, ENS-Lyon) to discover new antiviral cell-autonomous innate immune factors in mammals, based on new...
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Sorek Lab @soreklab.bsky.social · 23/01/2025
Our paper out @CellCellPress: Structure guided discovery of viral proteins that inhibit host immunity Congrats Erez Yirmiya, Azita Leavitt, Gil Amitai, our collaborators at the Kranzusch lab, and coauthors A 🧵 1/10 www.cell.com/cell/abstrac...
cell.com
Structure-guided discovery of viral proteins that inhibit host immunity
Large-scale, structure-guided computational pipeline sifts through millions of phage proteins to identify those that bind and antagonize host immune proteins. Detected proteins are shown to inhibit no...
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François Rousset @francoisrousset.bsky.social · 31/01/2025
Exciting to see our paper now published 🙌 www.science.org/doi/10.1126/... In this project co-led with @ostermanilya.bsky.social at @soreklab.bsky.social , we show that a bacterial immune system employs a TIR protein and a caspase-like protease, two typical immune components seen in eukaryotes. 🧵👇
science.org
TIR signaling activates caspase-like immunity in bacteria
Caspase family proteases and Toll/interleukin-1 receptor (TIR)-domain proteins have central roles in innate immunity and regulated cell death in humans. We describe a bacterial immune system comprisin...
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Francesca Fiorini @frafiorini.bsky.social · 28/01/2025
Delighted to share our latest work on SARS-CoV-2 Nucleocapsid and Nonsense-Mediated mRNA Decay. 👇 doi.org/10.1093/nar/...
doi.org
The SARS-CoV-2 nucleocapsid protein interferes with the full enzymatic activation of UPF1 and its interaction with UPF2
Abstract. The nonsense-mediated mRNA decay (NMD) pathway triggers the degradation of defective mRNAs and governs the expression of mRNAs with specific char
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Jeff Mugridge @jeffmugridge.bsky.social · 09/01/2025
Final thoughts: 💡TRMT1 cleavage & inactivation may be another mechanism by which SARS-CoV-2 manipulates host tRNA modifications and translation! 🦠We think this could impact viral pathogenesis or phenotypes! 💊Our structure might help understand Mpro substrate recognition or different pockets to drug!
A comical summary of the paper! A short cartoon with 4 panels showing: (1) TRMT1 wanting to transfer methyl groups to tRNA; the tRNA loves this because those methyl groups (on G26) will help its stability and overall translation properties. (2) But, uh oh, here comes the SARS-CoV-2 main protease! (3) The protease takes a big bite out of TRMT1, severing its leg (ie Zinc finger domain); *CHOMP*. (4) TRMT1 and tRNA cry out to one another in grief, as the wounded TRMT1 is no longer able transfer methyl groups to tRNA - disrupting its structure and translation properties!
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Jeff Mugridge @jeffmugridge.bsky.social · 09/01/2025
Next, with @lucievirevolte.bsky.social we found that the TRMT1 cleavage sequence is highly conserved in mammals, except for some #rodents 🐭, where a Q -> K mutation at the absolutely critical Q residue makes TRMT1 variants with this change entirely resistant to cleavage!... 6/9
(Top) Sequence logo showing that the TRMT1 cleavage consensus sequence is highly conserved in mammals, except in some rodents (denoted by a cute little mouse), where a key Q residue is replaced with K. (Bottom) Western blots showing that while WT TRMT1 is efficiently cleaved by Mpro, TRMT1 with the Q->K mutation (like in some rodents) is not cleaved! (Does this help out rodents during coronavirus infection? We don't know!)
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Jeff Mugridge @jeffmugridge.bsky.social · 09/01/2025
📣 Final version of our @elife.bsky.social article is now online! We show how the human tRNA methyltransferase TRMT1 is recognized, cleaved, and inactivated by the SARS-CoV-2 main protease to disrupt host tRNA modification! elifesciences.org/articles/91168 A short bluetorial... 🧵 1/9
elifesciences.org
Recognition and cleavage of human tRNA methyltransferase TRMT1 by the SARS-CoV-2 main protease
The SARS-CoV-2 main protease specifically cleaves a conserved sequence in the human tRNA modifying enzyme TRMT1, resulting in reduced tRNA binding and the complete loss of TRMT1-mediated tRNA methyltr...
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Joe Grove @grovearmada.bsky.social · 20/12/2024
🎁 Early Xmas present from your friends at the MRC-University of Glasgow Centre for Virus Research @cvrinfo.bsky.social We're thrilled to unwrap Viro3D - a comprehensive database of virus protein structures: >85,000 predicted structures from 4,400 human & animal viruses! 🦠 viro3d.cvr.gla.ac.uk
viro3d.cvr.gla.ac.uk
Viro3D
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Rebecca Tarnopol @tarnopol.bsky.social · 20/12/2024
Excited to share the major work of my dissertation, out now in @currentbiology.bsky.social! We use Drosophila genetics to dissect the evolution of phage-derived toxins that were horizontally transferred to insects and now function as potent anti-parasitoid defenses (1/n): tinyurl.com/2k9ypyxr
sciencedirect.com
Experimental horizontal transfer of phage-derived genes to Drosophila confers innate immunity to parasitoids
Metazoan parasites have played a major role in shaping innate immunity in animals. Insect hosts and parasitoid wasps are excellent models for illumina…
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American Society for Virology @amersocvirology.bsky.social · 04/12/2024
Get ready for ASV 2025! The 2025 American Society for Virology meeting will be hosted by McGill University and held at the Palais des Congrès de Montréal, Montréal, Québec, Canada from July 14 - 17, 2025. Abstract submission, travel award apps, and registration are now open! asv.org/asv2025/regi...
asv.org
Register 2025 | American Society for Virology
The 44th Annual Meeting of the American Society for Virology! Dates: July 14 – 17, 2025 (Monday – Thursday) Palais des congrès de Montréal Host: McGill University *TEACHER TRAVEL GRANTS: Applications…
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Nandan Gokhale @nandangokhale.bsky.social · 19/12/2024
Our work on cellular RNA interactions with MAVS that promote antiviral signaling is finally live. So grateful to our indispensable collaborators as well as reviewers who helped to strengthen our work. #RNA #innateimmunity #virology @ramlabuw.bsky.social www.science.org/doi/10.1126/...
science.org
Cellular RNA interacts with MAVS to promote antiviral signaling
Antiviral signaling downstream of RIG-I–like receptors (RLRs) proceeds through a multi-protein complex organized around the adaptor protein mitochondrial antiviral signaling protein (MAVS). Protein co...
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Lucie Etienne @lucievirevolte.bsky.social · 16/12/2024
2024 Science Breakthrough of the year: #HIV prevention 💜 www.science.org/content/arti...
science.org
Science’s 2024 Breakthrough of the Year: Opening the door to a new era of HIV prevention
A drug with a novel mechanism protects people against the AIDS virus for 6 months. It could speed the end of the epidemic—if those who need it most get access
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Caro Goujon @carogoujon.bsky.social · 09/12/2024
Latest preprint from @morielab.bsky.social #CRBM and our team @irim-life.bsky.social! Fantastic collaboration, started over a Zoom on an evening of the lockdown in April 2020 with María exposing us her ideas... >4,5 years later, here are the results! biorxiv.org/content/10.1... 1/5
biorxiv.org
SARS-CoV-2 predation of Golgi-bound PI4P primes the massive activation of the DNA Damage Response kinase ATM in the cytoplasm
Like all viruses, SARS-CoV-2, the causative agent of COVID-19, relies on host cell resources to replicate. Our study reveals that, among these resources, SARS-CoV-2 hijacks the oxysterol-binding prote...
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Caro Goujon @carogoujon.bsky.social · 09/12/2024
Working on Negative Strand RNA viruses? Here is the THE meeting you don't want to miss in 2025: #NSV2025! It will take place in vibrant Montpellier, South of France, and is organized by Wendy Barclay, Paul Duprex, Sean Whelan and Olivier Moncorgé Please share widely! #ViroSky #LoveVirology
ad for NSV 2025 meeting with views of Montpellier and the Mediterranean sea
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GERG @gerg77.bsky.social · 29/11/2024
We can then leverage the wealth of structure predictions and tools available in the post-alphafold era to gain a structural rationale for substrate specificity. Huge shout out to @martinsteinegger.bsky.social for both foldseek and foldmason - couldn't have made this work without these tools!
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David Enard @denard.bsky.social · 28/11/2024
We found high levels of adaptive evolution in genes expressed in barrier tissue immune cells including 🫁, and/or expressed early during immune responses --> host adaptation likely works best when it cuts infections short early, before pathogens reach high numbers. www.nature.com/articles/s41...
nature.com
Adaptation in human immune cells residing in tissues at the frontline of infections - Nature Communications
Immune cells are under evolutionary pressure due to their anti-infective defence role. Here Salvador-Martínez and Murga-Moreno et al. combine population genetics approaches and Human Cell Atlas data, ...
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 23/11/2024
Our Big Fantastic Virus Database (BFVD) is now published NAR! It contains protein structure predictions of major viral clades, enhanced by petabase-scale homology search and it's explorable on the web. 🌐 bfvd.foldseek.com 💾 bfvd.steineggerlab.workers.dev 📄 academic.oup.com/nar/advance-...
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Ram Savan @ramlabuw.bsky.social · 22/11/2024
Rachel Van Gelder, a recently minted PhD from the lab, shows IL-2 splices IFNG mRNA introns, increasing protein levels via NF-κB signaling. She uncovers a novel role for cytokine-induced splicing in immunity! 🧬 #RNA #Immunology #Research www.embopress.org/doi/full/10....
embopress.org
Interleukin-2-mediated NF-κB-dependent mRNA splicing modulates interferon gamma protein production | EMBO reports
imageimageIL-2 stimulation post-transcriptionally enhances splicing of IFNG mRNA in NK cells. Further, NF-κB signaling downstream of the IL-2 receptor is required for IFNG mRNA processing. IL-12 and ...
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Lise Chauveau @drlisechauveau.bsky.social · 20/11/2024
Let's introduce this new account with an overdue announcement! I officially started my new position as a CNRS permanent researcher @irim-life.bsky.social in October! 🥳 Happy to come back to this vibrant Institute and start a new chapter of my career 😊
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 15/11/2024
New GPU-based MMseqs2: 20x faster searches on a single L40S (approx. as fast as a RTX 4090) vs. a 128-core CPU. This work enables to set up a very cost-efficient ColabFold MSA GPU server. 🧵🧵 📄 www.biorxiv.org/content/10.1... 💾 mmseqs.com 🗞️ developer.nvidia.com/blog/boost-a...
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Gabriele Corso @gcorso.bsky.social · 17/11/2024
Thrilled to announce Boltz-1, the first open-source and commercially available model to achieve AlphaFold3-level accuracy on biomolecular structure prediction! An exciting collaboration with Jeremy, Saro, and an amazing team at MIT and Genesis Therapeutics. A thread!
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Karim Majzoub @karimaj.bsky.social · 17/11/2024
A starter pack for all virologists out there on the blue side ! Might be missing some people but it’s a good start ! go.bsky.app/DmphBCT
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