Sign in

Kyoka Kuroiwa

@kyokakuroiwa.bsky.social
229 followers 172 following 6 posts

Postdoc in @geminiteamlab.bsky.social (ZMBP Tübingen)🇩🇪←PhD, MSc@INRAE Avignon/Aix-Marseille U🇫🇷←BSc@Hokkaido U🇯🇵 Interested in plant virology/RNA/translation/viral symptoms/crop breeding 🌱🦠

PostsRepliesMedia
Reposted by Kyoka Kuroiwa
Dan Gibbs 🌱🧬 @djgibbs.bsky.social · 24/02/2026
My review “Co-translational control of protein stability and quality in plants” is now online at @jxbotany.bsky.social, in which I describe how co-translational processing and ribosome-associated quality control together establish protein stability and fate early in synthesis. tinyurl.com/5dhhz9h6
tinyurl.com
Co-translational control of protein stability and quality in plants
Abstract. Proteostasis relies on the coordinated control of protein synthesis, folding, modification and degradation, and an increasingly clear picture is
04224
Reposted by Kyoka Kuroiwa
GeminiTeamLab @geminiteamlab.bsky.social · 20/02/2026
RNA splicing generates a functionally specialized Rep protein isoform in geminiviruses — enabling timely control of the viral cycle. Strikingly, similar strategies might have evolved in DNA viruses infecting different kingdoms: www.biorxiv.org/content/10.6... Spearheaded by @delphinem-p.bsky.social!
05435
Reposted by Kyoka Kuroiwa
Plant & Cell Physiology @plantcellphysiol.bsky.social · 12/02/2026
Radicle, dude! 🏄 Liu et al show that 'target of rapamycin' or TOR signaling regulates #maize radicle development by modulating starch metabolism and energy homeostasis 🌽 🔗 doi.org/10.1093/pcp/... #PlantScience
doi.org
Target of rapamycin kinase is involved in regulating maize radicle development through starch metabolism
Abstract. Target of rapamycin (TOR) signaling plays a pivotal role in regulating various cellular processes, including energy metabolism and growth. In thi
084
Reposted by Kyoka Kuroiwa
Thomas Spallek @thomas-spallek.bsky.social · 12/02/2026
Big news from our lab: we can now stably edit the genome of a parasitic plant! Transgene-free, genome-edited P. japonicum in one generation! This will transform how we study #parasiticplants and other hard-to-transform plants. www.biorxiv.org/content/10.6...
35721
Reposted by Kyoka Kuroiwa
IHSM La Mayora UMA-CSIC @ihsmumacsic.bsky.social · 16/12/2025
📋 Join us on Friday 19th for a fascinating talk by Rosa Lozano-Durán from Center for Molecular Plant Biology (ZMBP), University of Tübingen (Germany) @unituebingen.bsky.social as part of the #IHSMLaMayoraSeminars series Don't miss it! 🕑 9:30 AM 📍 IHSM La Mayora Auditorium More information here ⬇️
0156
Reposted by Kyoka Kuroiwa
Yamuna Krishnan @krishnanyamuna.bsky.social · 17/12/2025
Organelles do NOT have a single uniform pH. And if you think they must, because “protons diffuse fast,” this paper is for you. A thread on why that assumption is wrong; and what we found instead. 🧵 1/n
29548230
Reposted by Kyoka Kuroiwa
Trends in Microbiology @cp-trendsmicrobiol.bsky.social · 04/12/2025
Cellular and viral RNA polymerases: evolutionary insights into eukaryotic origins
dlvr.it
Cellular and viral RNA polymerases: evolutionary insights into eukaryotic origins
Nucleocytoplasmic large DNA viruses (NCLDVs) encode multi-subunit RNA polymerases (msRNAPs) that challenge conventional views of viral evolution. Phylogenetic and structural studies reveal that NCLDV RNAP catalytic cores share deep evolutionary roots with eukaryotic counterparts, implicating ancient gene transfers that shaped the last eukaryotic common ancestor (LECA), underscoring NCLDVs’ pivotal role in eukaryotic origins. NCLDV RNAP retains the fundamental architecture of cellular RNAPs while evolving and adapting for viral gene regulation. This review summarizes structural and functional divergences between viral and cellular RNAPs, synthesizes evidence for virus-driven RNAP evolution, and evaluates emerging hypotheses of viral eukaryogenesis. Viewing viruses as evolutionary collaborators offers new insights into RNAP adaptability and bridges virology, evolutionary biology, and synthetic biology across diverse biological contexts.
032
Reposted by Kyoka Kuroiwa
Di Jiang @dijiang319.bsky.social · 13/10/2025
Last week @science.org mRNA initiation and termination are spatially coordinated | Science www.science.org/doi/10.1126/... from @anafiszbein.bsky.social @athmapai.bsky.social et al.
03612
Reposted by Kyoka Kuroiwa
Sainsbury Laboratory Cambridge University (SLCU) @slcuplants.bsky.social · 09/10/2025
Salicylic acid biosensor, SalicS1, tracks the plant immune hormone salicylic acid in real time - revealing propagation of hormone surge during plant pathogen advance Latest biosensor from @xanderjones.bsky.social team In Science doi.org/10.1126/scie... Summary www.slcu.cam.ac.uk/news/new-bio...
16835
Reposted by Kyoka Kuroiwa
GeminiTeamLab @geminiteamlab.bsky.social · 09/09/2025
📢 A Junior Professorship (W1, tenure track) is open at the Center for Plant Molecular Biology at Uni Tübingen (@zmbp-tuebingen.bsky.social) — to work on plant protein biochemistry (composition, structure, dynamics, or regulation of protein complexes). 🌱 Great opportunity — Apply by Oct 17th!
03451
Reposted by Kyoka Kuroiwa
David Balchin @davidbalchin.bsky.social · 19/09/2025
Our article on human multidomain protein biogenesis is now published in @natsmb.nature.com www.nature.com/articles/s41...
nature.com
The human ribosome modulates multidomain protein biogenesis by delaying cotranslational domain docking - Nature Structural & Molecular Biology
By studying dynamic folding intermediates on the human ribosome, Pellowe et al. show that newly made domains help each other to fold but do not stably interact until synthesis is complete, avoiding in...
34820
Reposted by Kyoka Kuroiwa
Hannah Richter @hannah-richter.bsky.social · 19/09/2025
The 2025 Ig Nobel-winning research was as wacky as ever. But wars, visa restrictions, Trump's border and research policies, and even an all-too-frequent airplane incident kept nearly half the winning teams from traveling to Boston @science.org www.science.org/content/arti...
science.org
The Ig Nobels are science’s most lighthearted event. This year is ‘not typical’
Amid Trump research cuts, visa restrictions, and international conflicts, some winners sit out the celebration of whimsical science
03216
Reposted by Kyoka Kuroiwa
Daniel Kierzkowski @kierzkowskilab.bsky.social · 16/09/2025
Join us at the Plant Science Research Institute of the University of Montreal to develop your research group in Plant Molecular Genetics: www.nature.com/naturecareer...
nature.com
Assistant Professor in Plant Molecular Genetics - Montréal, Quebec (CA) job with Institut de recherche en biologie végétale (IRBV) | 12844852
A full-time tenure-track assistant professor position at the IRBV, Université de Montréal.
13646
Reposted by Kyoka Kuroiwa
ウイルス学若手ネットワーク @virologywakate.bsky.social · 08/09/2025
🦠 ‼️WEBINAR ALERT‼️🦠 Join us for the September edition of the Virology Wakate Journal Club. Our featured speaker is Dr. Chantal Vogels, Assistant Professor at Yale School of Public Health (@yalesph.bsky.social). Please repost! To register: forms.gle/jGn9Y8c55Mp5...
forms.gle
'Wakate' Monthly Journal Club- English Session
Welcome! To register, kindly fill-up the information below. If you encounter some registration problems, please email akiba.yusa.36u@st.kyoto-u.ac.jp
011
Reposted by Kyoka Kuroiwa
bioRxiv Plant Bio @biorxiv-plants.bsky.social · 30/08/2025
Restricted edition of ALS is required during co-edition in order to maintain normal tomato development www.biorxiv.org/content/10.1101/202…
043
Reposted by Kyoka Kuroiwa
PLOS Biology @plosbiology.org · 28/07/2025
Cytosolic viral RNA is detected by #antiviral #PatternRecognition receptors like RIG-I. This study shows that #Mediator subunit MED23 limits RIG-I expression via FOXO3, dampening #InnateImmunity & highlighting MED23 as a potential therapeutic target @plosbiology.org 🧪 plos.io/457VwOe
Schematic showing that Med23 inhibits the antiviral IFN-I response by negatively regulating RIG-I. Med23 interacts with Foxo3 to transcriptionally repress RIG-I, thereby inhibiting the RNA virus-induced phosphorylation of TBK1 and IRF3, suppressing antiviral innate immune response, and promoting virus replication.
181
Reposted by Kyoka Kuroiwa
Jerónimo Rodríguez-Beltrán @jerorb.bsky.social · 22/07/2025
Do plasmids evolve faster 🐇, slower 🐢, or just like chromosomes 🧬? In our new paper, we tackled this question using theory, simulations, bioinformatics, and experiments! 👇 Check out all the details in Paula’s thread! Hint: 🐇 (most of the time)
biorxiv.org
Plasmids promote bacterial evolution through a copy number-driven increase in mutation rate
Plasmids are autonomously replicating DNA molecules that stably coexist with chromosomes in bacterial cells. These genetic elements drive horizontal gene transfer and play a fundamental role in bacter...
27139
Reposted by Kyoka Kuroiwa
Javier Santoyo @jsantoyo.bsky.social · 18/06/2025
ProtPhage: a deep learning framework for phage viral protein identification and functional annotation. #PhageProteins #FunctionalAnnotation #DeepLearning #Phages #Bioinformatics 🧬 🖥️ academic.oup.com/bib/article/...
1156
Reposted by Kyoka Kuroiwa
Stella Hurtley @smhsci.bsky.social · 21/07/2025
In First Release @science.org this week A hypoxia-responsive tRNA-derived small RNA confers renal protection through RNA autophagy | Science www.science.org/doi/10.1126/...
science.org
A hypoxia-responsive tRNA-derived small RNA confers renal protection through RNA autophagy
Transfer RNA-derived small RNAs (tsRNAs, or tDRs) perform a range of cellular functions. Here, we showed that a hypoxia-induced tDR, derived from the 3′ end of tRNA-Asp-GTC (tRNA-Asp-GTC-3′tDR), activ...
0255
Reposted by Kyoka Kuroiwa
Molecular Cell @cp-molcell.bsky.social · 19/07/2025
Mechanism of cotranslational protein N-myristoylation in human cells
dlvr.it
Mechanism of cotranslational protein N-myristoylation in human cells
In structure-function studies, Gamerdinger and Echeverria et al. uncover the cotranslational mechanism of N-myristoyltransferases (NMTs), essential enzymes that attach a lipid anchor to newborn proteins. They show that NMT activity is orchestrated by a key regulator at the ribosomal tunnel exit, the nascent polypeptide-associated complex (NAC).
011
Reposted by Kyoka Kuroiwa
Journal of Experimental Botany @jxbotany.bsky.social · 27/06/2025
🌱 🌽 SPECIAL ISSUE REVIEW 🦠 🧬 The role of mobile DNA elements in the dynamics of plant genome plasticity - Emmerson & Catoni 🔗 doi.org/10.1093/jxb/... #PlantScience 🧪 @robynemm.bsky.social‬
Fig. 3.Extrachromosomal DNA (ecDNA) in plant cells. Both circular (eccDNA, black circles) and linear (eclDNA, black lines) ecDNA of mobile elements can be found in plant cells. These molecules can enter the cell as viral forms (marked with 1) or be generated by endogenous DNA copies integrated into the genome, directly (2) or by reverse transcription into virus-like particles, starting from transcribed RNA molecules (3). Independently propagated eccDNA is also found associated with organelles (4). The ecDNA can leave the cell using viral carrier systems, in the presence of infections.
0122
Reposted by Kyoka Kuroiwa
Vanderschuren Lab @vanderschuren-lab.bsky.social · 15/07/2025
We just released in #GenomeBiology an important collective work. Improved assembly and annotation of a virus resistance locus in #cassava. @universitedeliege.bsky.social @kuleuvenplantinst.bsky.social @kuleuvenuniversity.bsky.social @inrae-cnrgv.bsky.social @yvdp.bsky.social rdcu.be/et1TZ
rdcu.be
A BAC-guided haplotype assembly pipeline increases the resolution of the virus resistance locus CMD2 in cassava
032
Reposted by Kyoka Kuroiwa
bioRxiv Plant Bio @biorxiv-plants.bsky.social · 18/07/2025
TOC1 supresses PAMP-triggered immunity in Arabidopsis www.biorxiv.org/content/10.1101/202…
033
Kyoka Kuroiwa @kyokakuroiwa.bsky.social · 15/07/2025
Are you interested in how DNA virus infection can change host chromatin localization🦠 ? Come to see my poster at #2025ISMPMI @geminiteamlab.bsky.social 📃Poster P-224:Tuesday 15th, Session 1
054
Reposted by Kyoka Kuroiwa
Laura Medina-Puche @lauramepul.bsky.social · 13/07/2025
The @geminiteamlab.bsky.social on the way to #2025ISMPMI See you all there!! 🫶🏻
3437
Reposted by Kyoka Kuroiwa
GeminiTeamLab @geminiteamlab.bsky.social · 09/07/2025
Have you ever wondered why virus-infected plants twist, curl, yellow, and/or stop growing? We did—you can read what we found in our latest review: www.annualreviews.org/content/jour... @gmvalora.bsky.social @annualreviews.bsky.social
annualreviews.org
Symptom Development in Plant Viral Diseases: What, How, and Why? | Annual Reviews
Plant viruses are obligate intracellular pathogens that hijack host cellular machinery to support their replication and spread. Viral infection induces a variety of structural and physiological change...
06837
Reposted by Kyoka Kuroiwa
Steven Burgess @sjb287.bsky.social · 26/06/2025
Seen a number of groups working on this, but impressive work to produce transgene free heritable genome editing that avoids tissue culture in monocots. Importantly has potential for a range of species www.nature.com/articles/s41...
nature.com
Transgene- and tissue culture-free heritable genome editing using RNA virus-based delivery in wheat - Nature Plants
Efficient delivery systems are urgently needed for genome editing in monocot plants. Here, this study develops a system of virus-induced genome editing in tillers (ViGET) to achieve heritable editing ...
0197
Reposted by Kyoka Kuroiwa
GeminiTeamLab @geminiteamlab.bsky.social · 22/05/2025
The GreenRobust Cluster of Excellence, a joint venture of the Universities of Tübingen, Heidelberg, and Hohenheim, is now a reality!! For the next 7 years, we will investigate the principles underlying robustness to perturbations in plants. Stay tuned! greenrobust.de 🍾🥂💚🌱 @dfg.de
greenrobust.de
GreenRobust
57623
Reposted by Kyoka Kuroiwa
Jim Hurley @jimhurley.bsky.social · 14/05/2025
mTORC1 is activated when cells are fed with amino acids. New preprint with @robzonculab.bsky.social led by Rachel Jansen shows how the massive "CastiGATOR" complex is formed when arginine-free CASTOR1 binds to the GATOR2 complex to antagonize mTORC1 starved cells. tinyurl.com/yr6en6f4
Cryo-EM structure of CASTOR1-GATOR2 complex
38231
Reposted by Kyoka Kuroiwa
Dior Kelley @diorkelley.bsky.social · 05/05/2025
New CRISPR tools for tomato functional genomics from Eilon Shani! 🍅 🧬 ✂️ www.nature.com/articles/s41...
nature.com
Construction of multi-targeted CRISPR libraries in tomato to overcome functional redundancy at genome-scale level - Nature Communications
Genetic variance is vital for breeding programs and mutant screening, yet traditional mutagenesis methods wrestle with genetic redundancy and a lack of specificity in gene targeting. Here the authors ...
05322
Reposted by Kyoka Kuroiwa
Andreas P.M. Weber 🌾🌱🧬 @apmweber.bsky.social · 26/03/2025
Lots of cool new features at the BAR ePlant Browser, such as ecotype SNP data mapped to protein sequence and structure. Check it out at: bar.utoronto.ca/eplant/ #PlantScience @bar-plantbio.bsky.social
05220
Reposted by Kyoka Kuroiwa
Tatsuya Nobori @tatsuyanobori.bsky.social · 08/01/2025
New year, new paper! Now published in @nature.com. We identified and characterised diverse immune cell states in plants under pathogen attack. My postdoc work in the Ecker lab at @salkinstitute.bsky.social. A thread (0/n) #PlantScience www.nature.com/articles/s41...
23253129
Reposted by Kyoka Kuroiwa
Joanna Masel @joannamasel.bsky.social · 12/12/2024
We identified protein domains in LUCA (Last Universal Common Ancestor). Their distinctive amino acid usage reveals the order amino acids were added to the genetic code, based mostly on size. Older proteins hint at earlier alternative codes. 1/15 @seekingluca.bsky.social www.pnas.org/doi/10.1073/...
pnas.org
Order of amino acid recruitment into the genetic code resolved by last universal common ancestor’s protein domains | PNAS
The current “consensus” order in which amino acids were added to the genetic code is based on potentially biased criteria, such as the absence of s...
12262116
Reposted by Kyoka Kuroiwa
Benoit Danilo 🦠 @individualpttrn.bsky.social · 14/12/2024
Engineering source-sink relations by prime editing confers heat-stress resilience in tomato and rice www.cell.com/cell/abstrac...
cell.com
0145
Kyoka Kuroiwa @kyokakuroiwa.bsky.social · 08/12/2024
academic.oup.com/nar/advance-...
academic.oup.com
High-throughput capture of transcription factor-driven epigenome dynamics using PHILO ChIP-seq
Abstract. Assessing the dynamics of chromatin features and transcription factor (TF) binding at scale remains a significant challenge in plants. Here, we p
010
Reposted by Kyoka Kuroiwa
Tatsuya Nobori @tatsuyanobori.bsky.social · 05/12/2024
Anti-viral defence by an mRNA ADP-ribosyltransferase that blocks translation www.nature.com/articles/s41...
nature.com
Anti-viral defence by an mRNA ADP-ribosyltransferase that blocks translation - Nature
The bacterial anti-phage toxin–antitoxin–chaperone defence system CmdTAC senses capsid proteins via CmdC, enabling dissociation from the CmdTAC complex of the RNA ADP-ribosyltransferase CmdT, which ta...
042