Aditya Kunjapur @kunjapur.bsky.social · 07/10/2026Congrats to Shelby Anderson and co-authors (3/3) 000
Aditya Kunjapur @kunjapur.bsky.social · 07/10/2026Our latest publication uses gene deletions to shed light on the specificity of bacterial nitroreductases and reports engineered strains that unlock new applications in whole-cell #biocatalysis, #metabolic_engineering, and #genetic_code_expansion www.nature.com/articles/s41... (1/3)nature.comRetention and biosynthesis of diverse nitroarenes in Escherichia coli after combinatorial nitroreductase gene deletions - Nature ChemistryNitroarenes are unstable in microbial cultures, limiting the biomanufacturing of these industrially and pharmaceutically important chemicals. Genome engineering of nitroreductase-deficient E. coli str... 182
Reposted by Aditya KunjapurRan Blekhman @blekhman.bsky.social · 23/09/2026We have to stop using "paper count" as a useful scientific metric. More writing output no longer means more knowledge gained www.washingtonpost.com/education/20...washingtonpost.comOne professor’s AI-assisted output: 200 papers and 14 books this yearAn online platform removed 257 papers written or co-written by the University of Chicago’s Nicholas Polson after other academics raised questions. 1011347
Reposted by Aditya KunjapurJoint Genome Institute @jgi.doe.gov · 14/09/2026From our FY26 Functional Genomics call: Speciality chemicals like non-standard amino acids could be made more efficiently in microbes with hardier enzymes. @kunjapur.bsky.social will use biodesign to make pathway enzymes more thermostable. Full portfolio: jointgeno.me/FGFY26 141
Aditya Kunjapur @kunjapur.bsky.social · 11/09/2026New PET upcycling work in Science Advances: BHET/MHET readily enter E. coli, letting us directly couple PET glycolysis to whole-cell biocatalysis. Fun collaboration with Dion Vlachos, and congrats to first author Roman Dickey! www.science.org/doi/10.1126/...science.orgRobust cellular transformations of PET deconstruction products by import of glycol estersEfforts to transform polyethylene terephthalate (PET) deconstruction products using live cells have been limited by terephthalic acid (TPA) uptake. Here, we used an intracellular carboxylate reduction... 054
Aditya Kunjapur @kunjapur.bsky.social · 06/07/2026Consider checking out our latest review article if you're interested in how a wave of efforts in amino acid biosynthesis are creating new opportunities in genetic code expansion 030
Aditya Kunjapur @kunjapur.bsky.social · 12/06/2026Our latest paper describes a single bacterial strain that can make different Phe derivatives from supplemented aromatic aldehydes or carboxylic acids and incorporate them into target proteins via genetic code expansion Congrats to Shelby Anderson and co-authors www.nature.com/articles/s41...nature.comCombined biosynthesis and site-specific incorporation of phenylalanine derivatives from aryl aldehydes or carboxylic acids - Nature CommunicationsGenetic code expansion can be limited by the need to supply non-standard amino acids. The authors design bacteria that perform integrated steps of converting supplemented aldehydes to L-phenylalanine ... 084
Reposted by Aditya KunjapurJenn Brophy @jennbrophy.bsky.social · 04/06/2026Excited to share our new preprint "Genetic code expansion enables plant-directed control of bacterial activity", a fantastic collaboration with @kunjapur.bsky.social lab! www.biorxiv.org/content/10.6...biorxiv.org 1259
Reposted by Aditya KunjapurTae Seok Moon @taeseokmoon.bsky.social · 08/05/2026Thank Bob Langer & AIChE again for this honor and featuring us: César de la Fuente, Aditya Kunjapur, Albert Keung & Ashish Kulkarni @delafuentelab.bsky.social @kunjapur.bsky.social giving.aiche.org/impact/stori... 022
Aditya Kunjapur @kunjapur.bsky.social · 05/11/2025I had an amazing time yesterday visiting @vdlorenzo.bsky.social and hearing about the many exciting projects underway in his lab. Our evening stroll through the heart of Madrid and dinner of tapas made for an unforgettable experience 060
Aditya Kunjapur @kunjapur.bsky.social · 04/11/2025It's an honor to visit @vdlorenzo.bsky.social and colleagues at El Centro Nacional de Biotecnología in beautiful Madrid, España. Me alegra estar aquí 050
Aditya Kunjapur @kunjapur.bsky.social · 03/10/2025Interested in using microbes to degrade plastics? We made the discovery that two breakdown products of PET, MHET and BHET, are readily taken up by E. coli cells Our latest preprint exploits this surprise to realize improvements in cell-based upcycling www.biorxiv.org/content/10.1...biorxiv.orgRobust cellular transformations of PET deconstruction products by import of glycol estersEfforts to transform polyethylene terephthalate (PET) deconstruction products using live cells have been limited by terephthalic acid (TPA) uptake. Here, we used an intracellular carboxylate reduction... 0246
Aditya Kunjapur @kunjapur.bsky.social · 13/08/2025My students have become very good at cloning. Now I can be in two continents at once this fall 030
Reposted by Aditya KunjapurSabyasachi Sen @sunny-sen.bsky.social · 17/07/2025Excited to announce our new methods paper in Methods in Enzymology! We share our pipeline for building high-diversity DNA libraries & exploring protein stability in E. coli. Free access until Sept 4: authors.elsevier.com/a/1lRkeHRzCX... Updated, companion preprint: www.biorxiv.org/content/10.1...authors.elsevier.com 053
Aditya Kunjapur @kunjapur.bsky.social · 17/07/2025Exciting to see this collaborative work about modeling soil microbiomes from the Kuehn, Mani, and Tikhonov labs published today Also delighted to have lead author Kiseok Lee start his postdoc in our lab Check out the paper below! 042
Aditya Kunjapur @kunjapur.bsky.social · 29/06/2025www.biotrans2025.com/programmebiotrans2025.comBiotrans 2025 ProgrammeDiscover the programme of Biotrans 2025. 001
Aditya Kunjapur @kunjapur.bsky.social · 29/06/2025Looking forward to the amazing program & making new connections at the 17th International Symposium on Biocatalysis and Biotransformations (Biotrans 2025) starting today in Basel I'm honored to present our work on Tuesday at 15:15 in the non-canonical amino acids session #biocatalysis 150
Reposted by Aditya KunjapurPablo Ivan Nikel @pabnik.bsky.social · 22/06/2025Wrapping up a fantastic #ME16 #Copenhagen — a success by all measures! Honored to co-chair the meeting w/I. Borodina, M. Chang, A. Mirończuk, C. Vickers, V. Šťovíček, Y. Zhou, M. Köpke & M. Herrgård & to work w/an outstanding team of colleagues, engaging communities & topics all around the world 0121
Aditya Kunjapur @kunjapur.bsky.social · 16/06/2025Congrats on completing your PhD @kiseokmicro.bsky.social! And welcome to our lab - very excited to work with you 040
Aditya Kunjapur @kunjapur.bsky.social · 15/06/2025I'm enjoying the start of the International Metabolic Engineering 16 #ME16 meeting in Copenhagen this week Thanks to the organizers for providing a chance to share our work Thanks to my students for taking these pics Looking forward to meeting other attendees 171
Reposted by Aditya KunjapurConor McClune @cmcclune.bsky.social · 11/06/2025Today in Nature we report a systematic strategy to activate & identify gene sets in plants. We identify 8 new genes from the yew tree's Taxol biosynthetic pathway, enabling us to engineer tobacco with 17- & 20-gene pathways to Taxol precursors baccatin III & deBz-deoxy-Taxol #SingleCell #secmet 🧬🧪🌾nature.comDiscovery of FoTO1 and Taxol genes enables biosynthesis of baccatin III - NatureAn approach that combines single-nucleus RNA sequencing and multiplexed perturbation identifies genes that enable the biosynthesis of direct precursors of the anti-cancer drug Taxol, whose curren... 512145
Aditya Kunjapur @kunjapur.bsky.social · 09/06/2025It is a real honor and delight to be hosted by @pabnik.bsky.social at DTU Biosustain! Looking forward to meeting folks & sharing info/ideas 040
Aditya Kunjapur @kunjapur.bsky.social · 25/05/2025Trump Has Cut Science Funding to Its Lowest Level in Decades www.nytimes.com/interactive/... ^ Useful info in this article about the level of funding of various NSF directorates/programs relative to the 10Y avg by this time of yearnytimes.comTrump Has Cut Science Funding to Its Lowest Level in DecadesThe lag in funding extends far beyond D.E.I. initiatives, affecting almost every area of science: chemistry, computing, engineering, materials and more. 001
Aditya Kunjapur @kunjapur.bsky.social · 23/05/2025I don't take tenure for granted anymore as universities are under unprecedented attack I'm also looking forward to sabbatical. I'll start as an Otto Mønsted Visiting Professor at Denmark Technical University next week and look forward to connecting more with my European colleagues (3/3) 070
Aditya Kunjapur @kunjapur.bsky.social · 23/05/2025We have a vibrant and supportive culture in the Chemical & Biomolecular Engineering department @udelaware.bsky.social. Thanks to the faculty and staff who create the environment to succeed I've benefited from great mentors at all stages & especially Wilfred Chen But most of all, the students (2/3) 130
Aditya Kunjapur @kunjapur.bsky.social · 23/05/2025With the state of US scientific funding it seems like an inappropriate time to celebrate anything But in the last week thanks to years of dedication from my students we were recognized through the Roberta Colman and Gerard Mangone awards, & tenure. Thank you to those who made it possible (1/3) 1100
Aditya Kunjapur @kunjapur.bsky.social · 23/05/2025If you're curious how the first 5 amino acids of newly generated protein N-termini can affect protein stability in E. coli, then check out our latest preprint We find new patterns of exceptions to the usual N-end rule Kudos to Sunny Sen & co-authors #synbio #protein_degradation 02414
Reposted by Aditya KunjapurThomas Arnesen @natmachinery.bsky.social · 23/05/2025Protein degradation in E. coli via N-terminal degradation signals (degrons) defined by the @kunjapur.bsky.social lab. @ispt-proteinterm.bsky.social www.biorxiv.org/content/10.1...biorxiv.orgCombinatorial mutagenesis of N-terminal sequences reveals unexpected and expanded stability determinants of the Escherichia coli N-degron pathwayAlthough it is known that penultimate N-terminal residues can influence protein stability by the N-degron pathway, there has not been a comprehensive effort to document nor predict these effects for n... 0118
Reposted by Aditya KunjapurNature Microbiology @natmicrobiol.nature.com · 06/05/2025🚨OUT NOW Engineered orthogonal and obligate bacterial commensalism mediated by a non-standard amino acid by @kunjapur.bsky.social et al. #MicroSky 🦠🔧 www.nature.com/articles/s41...nature.comEngineered orthogonal and obligate bacterial commensalism mediated by a non-standard amino acid - Nature MicrobiologyA genetically engineered microbial symbiosis based on synthetic auxotrophy is created, with potential implications as a biocontainment strategy. 1134
Aditya Kunjapur @kunjapur.bsky.social · 01/05/2025Thanks, Pat!! Hope you've been doing well. All three of the contexts you mentioned are under investigation by some combination of us, us and collaborators, or folks we have shared synthetic auxotrophs with 110
Aditya Kunjapur @kunjapur.bsky.social · 01/05/2025A more accurate statement than my original post: It seems there may be few known pairs of microbial species, outside of obligate intracellular symbionts/parasites, where one relies exclusively on another. Using a blend of synthetic and chemical biology, we designed such an interaction 061
Aditya Kunjapur @kunjapur.bsky.social · 01/05/2025Ah, thanks for sharing this example. "Free living" may be a bit of a misnomer, but you correctly interpreted that I wanted to exclude the category of obligate intracellular symbionts/parasites 000
Aditya Kunjapur @kunjapur.bsky.social · 01/05/2025This work represents a first step towards developing safeguards that could contain and sustain engineered microbes in a specific environment That could be useful for addressing myriad challenges in planetary health Work led by Amanda Forti, who is tenacious, meticulous, & entering the job market 122
Aditya Kunjapur @kunjapur.bsky.social · 01/05/2025It seems there are no free-living organisms known to rely exclusively on one other organism for their survival Until perhaps now Check out our latest publication in @natmicrobiol.nature.com to see how we designed an exclusive microbial reliance using GCE rdcu.be/ekepI 1/2rdcu.beEngineered orthogonal and obligate bacterial commensalism mediated by a non-standard amino acidNature Microbiology - A genetically engineered microbial symbiosis based on synthetic auxotrophy is created, with potential implications as a biocontainment strategy. 34318
Aditya Kunjapur @kunjapur.bsky.social · 08/02/2025This move could singlehandedly dismantle American leadership in science and technology innovation. It goes into effect on Monday. How will universities adjust their budgets to support critical ongoing research? 031
Aditya Kunjapur @kunjapur.bsky.social · 07/02/2025See here for an exciting development in genome engineering for genetic code expansion and for understanding the pliability of components involved in protein translational termination - from the Isaacs Lab www.nature.com/articles/s41...nature.comEngineering a genomically recoded organism with one stop codon - NatureOchre, a strain of Escherichia coli engineered to have a single stop codon, enables reassignment of four codons for non-degenerate functions, such as incorporation of non-standard amino acids into pro... 052
Reposted by Aditya KunjapurRahul K @theresearch.bsky.social · 17/01/20252025-01-12 Issue of #engineeredlivingmaterials feed biomed.news/bims-enlima/... h/t @biomednews.bsky.social includes @kunjapur.bsky.social lab's preprint @biorxivpreprint.bsky.social on combined biosynthesis and site-specific incorporation of phenylalanine derivatives in engineered bacteria 043
Aditya Kunjapur @kunjapur.bsky.social · 12/01/2025Thank you for speaking! Your lab is off to an exciting start!! 010
Aditya Kunjapur @kunjapur.bsky.social · 10/01/2025Bill Bentley from Maryland kicks off our microbial communities session by discussing mediated electrochemical probing for mAbs and cells #MASBN 000
Aditya Kunjapur @kunjapur.bsky.social · 10/01/2025Yes, I also wonder about the different governance approaches these technologies would face in different regions 110
Aditya Kunjapur @kunjapur.bsky.social · 10/01/2025Day 2 of #MASBN kicks off with our keynote speaker Chris Voigt discussing his inspiring work on engineering microbes for environmental release #synbio 120
Aditya Kunjapur @kunjapur.bsky.social · 09/01/2025Our last speaker in the New to the Mid Atlantic session at this year's #MASBN symposium is @saramol.bsky.social who recently started her lab at U. Maryland. Cool results on asymmetric cell division for patterning #synbio 051
Aditya Kunjapur @kunjapur.bsky.social · 09/01/2025We're excited to hear about electromicrobiology from @electromicrobe.bsky.social who recently started his lab @princetonupress.bsky.social #MASBN #synbio 061
Aditya Kunjapur @kunjapur.bsky.social · 09/01/2025Next up at MASBN is @victoriagmuir.bsky.social , my new colleague at @udelaware.bsky.social who is studying how cells navigate complex environments and host-pathogen interactions #MASBN #synbio 041
Aditya Kunjapur @kunjapur.bsky.social · 09/01/2025In our New to the Mid Atlantic session, we're pleased to have Ophelia Venturelli tell us about multi-scale dynamics in gut microbial communities @oventurelli2.bsky.social #MASBN #synbio 051
Aditya Kunjapur @kunjapur.bsky.social · 09/01/2025And the MASBN Symposium is now in full swing as Sherry Gao from UPenn kicks us off 031