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Krzysztof T Jurdzinski

@ktjurdzinski.eurosky.social
348 followers 377 following 142 posts

PhD student at Anders Andersson's lab at KTH/SciLifeLab, Stockholm. Microbial ecologist, evolutionary biologist, bioinformatician. ktjmicrobes.com

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Reposted by Krzysztof T Jurdzinski
Nobel Prize @nobelprize.org · 3h
Peter Hegemann and Georg Nagel – awarded the 2026 medicine prize – discovered a remarkable protein, channelrhodopsin, in a single-celled alga. Hegemann wondered how Chlamydomonas, a single-celled alga, is able to swim towards a light source.
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Emma Bell @emma-bell.bsky.social · 28/09/2026
Read more about our recent publication on using the microbiome as a biosensor in News from Stockholm University Baltic Sea Centre: www.su.se/english/divi... With @garefelt.bsky.social, @ktjurdzinski.eurosky.social, @doubleanders.bsky.social
su.se
DNA from marine microbes can predict the status of the sea - Stockholms universitet
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 28/09/2026
A global mitochondrial genomic atlas illuminates freshwater microeukaryote diversity #microsky #protistsonsky www.nature.com/articles/s41...
nature.com
A global mitochondrial genomic atlas illuminates freshwater microeukaryote diversity - Nature Communications
Environmental genomics has focused mainly on prokaryotes, leaving microbial eukaryote diversity poorly understood. Using ~20,000 mitochondrial genomes from 3,400 lake metagenomes worldwide, this study...
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Emma Bell @emma-bell.bsky.social · 04/09/2026
Doing aquatic microbiology research in Sweden? Become part of the Aquatic Microbiome Research Initiative (AMRI) and join us for our next meeting in Stockholm this November! amri-sweden.github.io
amri-sweden.github.io
Welcome to AMRI
Aquatic Microbiome Research Initiative
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MEPGT @mepgt.bsky.social · 30/08/2026
Very important paper by @phylogenetrips.bsky.social "Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale" | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale | PNAS
Adaptation in protein-coding sequences can be detected from multiple sequence alignments across species or alternatively by leveraging polymorphism...
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Nicole Dubilier @nicoledubilier.bsky.social · 13/08/2026
Hiding in plain sight: Animals eat the natural bioplastic PHA We discovered that many animals can break down PHA. And many of these enzymes had been sitting unnoticed in genome databases. www.nature.com/articles/s41...
nature.com
Animal degradation of microbial storage polyhydroxyalkanoates - Nature Ecology & Evolution
This study shows that the degradation of microbial storage polyhydroxyalkanoates is not just restricted to microorganisms by finding that some animals also have the enzymes required to break down thes...
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Nature @nature.com · 14/08/2026
Largest study of its kind finds that neighbourhoods with a rise in the number of undocumented migrants did not show a rise in violent crime rates go.nature.com/4gvBVyq
go.nature.com
Undocumented migration does not raise crime rates, huge study finds
Largest study of its kind finds that neighbourhoods with a rise in the number of undocumented migrants did not show a rise in violent crime rates.
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donovan-parks.bsky.social @donovan-parks.bsky.social · 10/08/2026
Our paper identifying a stop codon reassignment in Eggerthellaceae species found in mammalian guts is now out! Great collaborative effort with Pierre Chaumeil, Maria Chuvochina, and Phil Hugenholtz (@xrefugee13.bsky.social). www.microbiologyresearch.org/content/jour... @microbiologysociety.org
microbiologyresearch.org
Stop codon reassignment to tryptophan in members of the bacterial phylum Actinomycetota
Reassignment of stop codons is a significant evolutionary event with recoding of UGA to tryptophan being previously identified in only three bacterial phyla, the Bacillota, Pseudomonadota and Verrucom...
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Jürgen Strassert @strassert.bsky.social · 08/07/2026
New preprint: We studied the population dynamics of Arctic #phytoplankton and #mycoplankton and found evidence for chytrid-mediated diatom bloom termination. www.biorxiv.org/content/10.6... Congrats @paulinethome.bsky.social #protists #protistsonsky #algae #diatoms #chytrids
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Cameron Thrash @jcamthrash.bsky.social · 24/06/2026
Salinity-driven adaptations and evolution of DNA viruses in estuarine-coastal ecosystems journals.asm.org/doi/10.1128/... #jcampubs 🌊
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Eurosky Social @eurosky.social · 23/06/2026
Move to Eurosky today - hosted in Europe, governed by European law, open to everyone Use Bluesky as normal: your data & your connections all stay the same. Our commitment: we will never sell your content, your data, or profile you for advertising. move.eurosky.tech
move.eurosky.tech
EU-HAUL - Start Account Migration
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Thomas Broyer @tbroyer.ltgt.net · 17/06/2026
Why choose a commercial entity that just went closed-source when a non-commercial one that builds in the open exists? (namely @eurosky.social) Didn't you just (exactly 2 weeks ago) reaffirm your support to open source “for Europe’s technological sovereignty”?
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Emelia @thisismissem.social · 21/06/2026
One is non-profit, the other for-profit, too. EU picked for-profit over non-profit social good, that was recommended to them by the JRC report I just shared.
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Guy Leonard @guyleonard.eurosky.social · 18/06/2026
Moved my @bsky.app account over to @eurosky.social using the service move.eurosky.tech - everything stays the same (followers/posts/etc) just now my data is stored in the EU & not the USA! Super easy to do and with better protections! I am slowly moving all my services away from US-based providers.
move.eurosky.tech
EU-HAUL - Start Account Migration
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Coleen Murphy @ctmurphy1.bsky.social · 17/06/2026
one anecdote: I was searching for a link to one of my old papers on Google, and the automated Gemini summary attributed all of my lab's work to my husband
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Leibniz-Institut für Gewässerökologie und Binnenfischerei (IGB) @igb-berlin.de · 15/06/2026
🌊 After the 2022 Oder environmental disaster: Research-based recommendations for #policymakers and #authorities handed over to Federal Environment Minister Carsten Schneider. Full details + research findings from the ODER~SO project: www.igb-berlin.de/en/news/afte... #Odra #River #Research #Science
igb-berlin.de
After the Oder environmental disaster: recommendations for action presented to politicis and authorities
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 15/06/2026
Our study on how and what we can predict using plankton metabarcoding data now out in @commsearth.nature.com! It was great to work on it together with @doubleanders.bsky.social, @emma-bell.bsky.social, @garefelt.bsky.social et al. www.nature.com/articles/s43...
nature.com
The marine microbiome can accurately predict its chemical and biological environment - Communications Earth & Environment
Microbial DNA profiles from seawater can act as biosensors of environmental conditions and ecosystem status, demonstrating the potential of metabarcoding and machine learning in marine monitoring and ...
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 15/06/2026
Forgot the handle, #MicroSky
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 15/06/2026
Our study on how and what we can predict using plankton metabarcoding data now out in @commsearth.nature.com! It was great to work on it together with @doubleanders.bsky.social, @emma-bell.bsky.social, @garefelt.bsky.social et al. www.nature.com/articles/s43...
nature.com
The marine microbiome can accurately predict its chemical and biological environment - Communications Earth & Environment
Microbial DNA profiles from seawater can act as biosensors of environmental conditions and ecosystem status, demonstrating the potential of metabarcoding and machine learning in marine monitoring and ...
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 15/06/2026
A thing loosely related to my research but with high personal significance, since I grew up next to the Odra (ger. Oder) river. Though these are recommendations for policy makers in a specific case, it is an interesting read on challenges facing European rivers. www.igb-berlin.de/en/news/afte...
igb-berlin.de
After the Oder environmental disaster: recommendations for action presented to politicis and authorities
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 04/06/2026
An awesome opportunity to work on multipartite ecology of phages in an unusually welcoming and intellectually stimulating environment.
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ISEP @isepprotists.bsky.social · 04/06/2026
New #ISEPpapers by @deemteam.bsky.social! Reversal to osmotrophy in eukaryotes www.nature.com/articles/s41... "Distant eukaryotic lineages convergently reverted from predation to osmotrophy through co-option of bacterial genes and their mobilization via eukaryote-to-eukaryote HGT" #Protists
a simplified evolutionary tree of eukaryotes
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Pierre Peterlongo @pierrepeterlongo.bsky.social · 03/06/2026
🌎 🧬 🖥️ logan-search.org the tool to query all SRA sequences (Dec 2023 snapshot) — just got major updates. Here's what's new. 🧵 1/12
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 29/05/2026
A recent work led by collaborators, on comparing metabarcoding and light microscopy for pelagic monitoring in the Baltic Sea. Proud to be a part of it. #MicroSky doi.org/10.1038/s415...
doi.org
Comparing DNA metabarcoding with light microscopy to identify eukaryotic phytoplankton in the Baltic Sea, Kattegat and Skagerrak - Scientific Reports
Scientific Reports - Comparing DNA metabarcoding with light microscopy to identify eukaryotic phytoplankton in the Baltic Sea, Kattegat and Skagerrak
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Susie Grigson @susiegriggo.bsky.social · 20/05/2026
Beyond thrilled that our paper ‘Co-migration of hundreds of microbial species over metres drives selection and promotes non-motile hitchhikers’ has been accepted in Nature Communications! 🎉🦠 (1/n) www.nature.com/articles/s41...
nature.com
Co-migration of hundreds of microbial species over metres drives selection and promotes non-motile hitchhikers - Nature Communications
Migration of microbial communities is poorly understood. Here, the authors use a meso-tube assay to show that hundreds of microbial species co-migrate over metre scales via chemotaxis, which restructu...
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Cameron Thrash @jcamthrash.bsky.social · 22/05/2026
Revised 16S rRNA V4 hypervariable region targeting primers enhance detection of Patescibacteria and other lineages across diverse environments academic.oup.com/ismecommun/a... #jcampubs
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Alejandro Manzano Marín @amanzanom.bsky.social · 18/05/2026
New work out! #Coevolution and synchronized evolutionary rates in #aphid dual #endosymbiot sytems w/ Jess, Emmanuelle, Armelle, & co. doi.org/10.64898/202... @cbgpmontpellier.bsky.social @inrae-france.bsky.social @cemess.bsky.social @dome-vienna.bsky.social @univie.ac.at #SymbioSky #MicroSky
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Luis Pedro Coelho @luispedrocoelho.bsky.social · 13/05/2026
More details to follow later, but this has been in the works for almost 6 years, so it is great to finally see it in preprint form: "The elusive resistome: a global comparison reveals large discrepancies among detection pipelines" www.biorxiv.org/content/10.6...
biorxiv.org
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Ramon Massana @rmassanam.bsky.social · 26/03/2026
Very excited to present our new project #BYGENEX, an @ERC_Research Advanced Grant! During the next five years we will be studying the genetic mechanisms that govern the phagocytosis of bacteria by protists @icmcsic.bsky.social
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Archaea Biology Vienna @archaea-vienna.bsky.social · 11/05/2026
Do biofilms give an ecological advantage? Yes! A fantastic follow-up to our previous biofilm work in ammonia-oxidizing archaea: "Biofilm Lifestyle Drives Ecophysiological Niche Expansion in an Archaeal Soil Nitrifier" www.biorxiv.org/content/10.6... Congratulations to all authors! #archaea
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Kristina Jonas @krijonas.bsky.social · 06/05/2026
We’re hiring! 🇸🇪🔬
 Tenure-track Assistant Professor in Prokaryotic Microbiology (molecular focus) at Stockholm University. Supportive environment + strong molecular research 👉https://su.varbi.com/en/what:job/jobID:921526/type:job/where:125/apply:1 Please share!!
su.varbi.com
Biträdande lektor i prokaryot mikrobiologi med inriktning mot molekylära processer
Institutionen för molekylär biovetenskap, Wenner-Grens institut (MBW) bedriver experimentell grundforskning inom molekylär cellbiologi, integrativ biologi och infektions- och immunbiologi. Forsknin
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rafamorcillo.bsky.social @rafamorcillo.bsky.social · 02/05/2026
Really happy and excited to share our new paper on how plants perceive bacterial quorum sensing signals and activate a multilayered immune response 🌱🦠 Link here: www.pnas.org/doi/10.1073/...
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Amelia Rotaru @ameliarotaru.bsky.social · 18/03/2026
Please help spread the word about this 3-year postdoc position in my team. If your expertise & interest lie in studying how organisms from different domains of life (Bacteria and Archaea) communicate, come join us this summer in cozy Odense, Denmark. Job post: www.nature.com/naturecareer...
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Cameron Thrash @jcamthrash.bsky.social · 18/03/2026
Carbon, nitrogen, and sulfur cycling unveil deep-sea microbial niches in the Atacama Trench www.nature.com/articles/s41... #jcampubs 🌊
nature.com
Carbon, nitrogen, and sulfur cycling unveil deep-sea microbial niches in the Atacama Trench - Nature Communications
Deep sea sediment microbes recycle key elements such as nitrogen, carbon, and sulphur. Gene activity from Chilean sediments shows communities are fuelled by sinking organic matter and by a sulphur ric...
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Anna Karnkowska @ankarn.bsky.social · 20/04/2026
Really excited to share our new paper from @ibe-warszawa.bsky.social protist team! 🎉 We dive into protist symbioses and show how these interactions shape ecosystems and have played a key role in the evolution of eukaryotes 🦠
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BejaLabTechnion @bejalab.bsky.social · 20/04/2026
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids pmc.ncbi.nlm.nih.gov/articles/PMC...
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Micah Dunthorn @micahdunthorn.bsky.social · 17/04/2026
Quick taxonomic assignment of Nanopore metabarcoding data
github.com
GitHub - frederic-mahe/nf-pore2taxa: quick taxonomic assignment of Nanopore metabarding data
quick taxonomic assignment of Nanopore metabarding data - frederic-mahe/nf-pore2taxa
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ace-gtdb.bsky.social @ace-gtdb.bsky.social · 15/04/2026
GTDB release 11 based on RefSeq 232 (R11-RS232) is live at gtdb.ecogenomic.org. This release covers 901,341 genomes (23% increase) and has 199,923 species clusters (39% increase). Release notes at: forum.gtdb.ecogenomic.org/t/announcing.... Release statistics at: gtdb.ecogenomic.org/stats/r232.
gtdb.ecogenomic.org
GTDB - Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an initiative to establish a standardised microbial taxonomy based on genome phylogeny.
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ISEP @isepprotists.bsky.social · 14/04/2026
New #ISEPpapers #preprint by @deemteam.bsky.social: Re-evaluating the eukaryotic Tree of Life with independent phylogenomic data www.biorxiv.org/content/10.6... #Protists #Microbes #Evolution #Eukaryotes #TreeOfLife #Phylogeny #Phylogenomics #Bioinformatics #Algae
a simplified evolutionary tree of eukaryotes with pictures of various microbes
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Sebastian Deorowicz @sdeorowicz.bsky.social · 14/04/2026
10 years after the first FAMSA paper, its successor is now published in Nat Biotech! We believe that FAMSA2 can enable analyses of large protein collections that were previously unattainable. Thank you, Andrzej and Cedric, for great collaboration www.nature.com/articles/s41...
nature.com
Fast and accurate multiple-protein-sequence alignment at scale with FAMSA2 - Nature Biotechnology
FAMSA2 accurately aligns millions of protein sequences at high speed.
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Sara Mitri @saramitri.bsky.social · 14/04/2026
Don't miss this fantastic conference! It's not only a pioneer in hub-based conferences (you go in person but connect to 7 other hubs worldwide), but it's one of the best conferences in the field! Register now and see you there :)
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Evgenii Protasov @evgenii-protasov.bsky.social · 12/04/2026
Energetics and Ecological Implications of Bacterial Electron Transport Chains #microbiology #biochemistry #bioenergetics #MicroSky doi.org/10.1111/1758...
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Beate Kraft @beatekraft.bsky.social · 07/04/2026
📣We have 5 PhD positions in hadal biogeochemistry and microbial ecology at the Danish Center for Hadal Research: lnkd.in/eJ6rp_Rk. 📣 Deadline: 4 May 2026 Please share widely! fa-eosd-saasfaprod1.fa.ocs.oraclecloud.com/hcmUI/Candid...
fa-eosd-saasfaprod1.fa.ocs.oraclecloud.com
PhD positions in hadal biogeochemistry & microbial ecology
Application deadline: 4 May 2026 at 23:59 hours local Danish time
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Smart Alyk @smartalyk.bsky.social · 09/04/2026
DAY 308 SPECIES 308 - Tripos muelleri STAGE: Protists MEDIUM: Arches Paper. Chromatek watercolor, Sakura pen T. muelleri is a marine planktonic dinoflagellate renowned for its distinct, pitchfork shaped silhouette. #sciart #watercolor #painting #art #paint #protist #eukaryotic #protistsonsky
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Jaebeom Kim @jbeom.bsky.social · 09/04/2026
Metabuli & Metabuli App v1.2 improve novel species classification with higher precision and recall. New light mode is 1.8× faster and requires 50% less storage while keeping precision. New RefSeq, GTDB, HRGM, and HROM databases added. 💾 github.com/steineggerla... 📄 doi.org/10.64898/2026.03.13.711249
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Courtney Stairs @cstairs.bsky.social · 04/04/2026
We tested the efficacy of semi-permeable capsules to capture protists from cultures and environmental samples using the Onyx from @atrandi.bsky.social. Tremendous effort from everyone in the lab and led by Marco Fantini and Nik Brask - check out the videos here: www.biorxiv.org/content/10.6...
biorxiv.org
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Tominaga K. (tomiken) @pacyc184.bsky.social · 25/03/2026
Latitudinal diversity gradients and selective microbial exchange at the Atlantic ocean-air interface | bioRxiv www.biorxiv.org/content/10.64898/20…
biorxiv.org
Latitudinal diversity gradients and selective microbial exchange at the Atlantic ocean-air interface
Microbial communities at the ocean-atmosphere interface play a vital role in nutrient, aerosol, and water cycling, yet their large-scale biogeography remains scarcely studied. Here we assessed microbial cell abundance and community structure in air and surface ocean samples along a 14,400 km transect from the polar circle to the equator. Air and surface ocean microbiomes were taxonomically distinct across the North East Atlantic. The microbiome in the air had a lower local community richness compared to the surface ocean, yet was more diverse across larger geographical scales. Our results suggest that terrestrial-derived air masses affected air and surface ocean communities. Air microbial communities showed a latitudinal diversity gradient with richness and cell abundance increasing from the polar circle to the equator. We observed an exchange of microbial lineages between ocean and air, however, most lineages were confined to one realm, suggesting lineage-selective aerosolization and deposition of microbial cells. ### Competing Interest Statement The authors have declared no competing interest.
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Krzysztof T Jurdzinski @ktjurdzinski.eurosky.social · 24/03/2026
Defensomes, counter-defensomes, and the remodeling of microbial communities doi.org/10.1093/pnas...
academic.oup.com
Defensomes, counter-defensomes, and the remodeling of microbial communities
Abstract. Bacteria and mobile genetic elements (MGEs) have coevolved for billions of years in an enduring evolutionary arms race, leading to the emergence
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Cameron Thrash @jcamthrash.bsky.social · 24/03/2026
Taxonomic composition and ecophysiology of resident bacteria associated with marine phytoplankton www.nature.com/articles/s41... #jcampubs 🌊
nature.com
Taxonomic composition and ecophysiology of resident bacteria associated with marine phytoplankton - Nature Ecology & Evolution
This study reveals that some bacteria living in the phycosphere of marine diatoms and dinoflagellates are host-specific with genomic functions matching their hosts, while some termed as ‘foundation’ b...
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