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Julien Devilliers

@juliendevilliers.bsky.social
280 followers 338 following 9 posts

Postdoc University of Zürich / sensory system 🦟 / molecular biology / entomology / phylogenomics / colour pattern / mimicry / vision / polarised light 🦋🇨🇵🇬🇧🇺🇲🇨🇭 juliendevi.github.io

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Reposted by Julien Devilliers
Sergei Pond @sergeilkp.bsky.social · 11/09/2026
I've spent ~30 years writing HyPhy to study selection & evolution. That era is coming to a close. HyPhy is passing the torch to HyphAeon: a ~2M parameter geometric transformer running in the browser that does things we never built it to do. @nclark.bsky.social @brcanalytics.bsky.social 🧵👇
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Dr George RA Hancock 🦋🦎 @grahancock.bsky.social · 30/09/2026
Woohoo, it's now live! We show, using four lines of evidence, that butterfly wings can create illusory motion effects! @esbriolat.bsky.social, @scienceanna.bsky.social, @lauraakelley.bsky.social, @jtroscianko.bsky.social www.nature.com/articles/s41...
nature.com
Butterfly wing patterns in flight create powerful illusory motion cues - Nature
Butterfly wing patterns and flight dynamics work in tandem to create powerful visual illusions that confuse predators, potentially representing one of the most successful visual defence strategies in ...
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Kate Laskowski @katelaskowski.bsky.social · 10/09/2026
Adding this immediately into the opening lecture for my large undergrad class....
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Loukas Theodosiou @bioinformatician.bsky.social · 19/07/2026
After four years, several updates and a handful of CRAN releases, 𝗹𝘁𝗰 𝗰𝗼𝗹𝗼𝗿 𝗽𝗮𝗹𝗲𝘁𝘁𝗲 𝗥-𝗽𝗮𝗰𝗸𝗮𝗴𝗲, reached a version I feel genuinely good about sharing with the community. github.com/loukesio/ltc...
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PLOS Biology @plosbiology.org · 10/07/2026
How do aerodynamic constraints and evolutionary pressures shape the diversity of flight in true flies? By integrating wing shape, wing motion and #aerodynamics, this study uncovers similarities as well as striking divergences in flight performance. 🧪 #AcademicSky #evolution plos.io/4b4LMbJ
A graph of wing shape variation across Diptera, quantified using a Principal Component Analysis (PCA). The two first principal components (PC1 and PC2), together with the associated shape changes and percentage of the variation explained by the principal components. Shown wing shapes represent the extreme values associated with each PC axis. Each data point shows a species-average wing shape. Species for which flight was quantified are highlighted with black circles.
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Todd Oakley @ostratodd.bsky.social · 17/06/2026
🧵 New paper! We’re excited to release OPTICS: software that immediately predicts color sensitivity from any opsin protein sequence. In other words: give OPTICS any opsin sequence, and it predicts the wavelength of light the pigment is most sensitive to 🌈👁️ academic.oup.com/mbe/advance-...
academic.oup.com
Accessible and Robust Machine Learning Approaches to Improve the Opsin Genotype-Phenotype Map
Abstract. Predicting phenotypes from genetic variation is a central challenge in biology. Here, machine learning (ML) offers great promise, but its use is
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Vincent Debat @vincentdebat.bsky.social · 10/06/2026
New paper on Biorxiv by Raphaël Dupillier, analyzing escape flight in Morpho menelaus : huge field work effort! www.biorxiv.org/content/10.6...
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LIB @leibnizlib.bsky.social · 26/05/2026
Invasive insects don’t find hosts by chance: They rely on specialized chemical sensing systems. By decoding the genome & gene activity of the woodwasp Sirex noctilio, researchers uncovered how this forest pest may detect pine hosts, mates & egg-laying sites. #LIBresearch © Postma et al. CC BY 1/3
Two PCA plots with points in various colors and shapes representing life stage, sex, and body part of Sirex noctilio, accompanied by illustrations of a female and male insect in different colors.
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Andrew Roger @andrewjroger.bsky.social · 06/05/2026
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models academic.oup.com/mbe/article/...
academic.oup.com
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models
Abstract. IQ-TREE (https://iqtree.github.io/) is a widely used open-source software tool for efficiently inferring phylogenetic trees under maximum likelih
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Cedric van den Berg @vancedberg.bsky.social · 06/05/2026
charisma: An R package to perform reproducible colour characterization of digital images for biological studies. Fresh in Methods in Ecology and Evolution: besjournals.onlinelibrary.wiley.com/share/AGQZAA... #colsci
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Julien Devilliers @juliendevilliers.bsky.social · 04/05/2026
We reviewed our knowledge on #mosquitoes #circadian clocks, highlighting tissue and species specific modulation of the clocks! kwnsfk27.r.eu-west-1.awstrack.me/L0/https:%2F... @thevinaugerlab.bsky.social @lahonderelab.bsky.social @joshuabenoit.bsky.social
kwnsfk27.r.eu-west-1.awstrack.me
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 14/04/2026
bifrost: an R package for scalable inference of phylogenetic shifts in multivariate evolutionary dynamics www.biorxiv.org/content/10.64898/20…
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Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 28/02/2026
So I pleased to announce the conceptual spawn of FigTree: PearTree (acronym still to be finalised). If you want to dive right in it is hosted as a web app here: artic-network.github.io/peartree (click the “Example...” button for immediate candy and then click every button you can find).
artic-network.github.io
PearTree — Phylogenetic Tree Viewer
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Eddie Pérochon @eperochon.bsky.social · 06/02/2026
Our new study is out in @pnas.org ! 🐜🌍 We show that the environment shapes how ant societies are distributed across the world. Accessible here: www.pnas.org/doi/10.1073/...
pnas.org
Environmental conditions shape the global distribution of ant societies | PNAS
Sociality has evolved several times and is a key strategy for overcoming environmental challenges and promoting ecological success. Yet, it remains...
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Laurie Belcher @lauriebelch.bsky.social · 29/01/2026
Calling all OrthoFinder users! We’ve just released GLADE, a tool to infer gene gains, losses, duplications, and ancestral genomes across a phylogeny. GLADE runs directly on OrthoFinder results. www.biorxiv.org/content/10.6... github.com/lauriebelch/... (1/10)
biorxiv.org
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Julien Devilliers @juliendevilliers.bsky.social · 24/01/2026
A bit of a different collaboration on neurodegenerative diseases between at the time PhD students journals.sagepub.com/doi/10.1177/...
journals.sagepub.com
Glucocorticoid Treatment Dampens Kynurenine Pathway Activation and Cytokine Release in Immune Stimulated Human Microglia - Martina Esposito Soccoio, Robert P. Mason, Julien Devilliers, Roberto Feuda, ...
As a first line of defence for the central nervous system (CNS), microglia play a critical role in maintaining homeostasis within the brain. Upon detection of d...
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Julien Devilliers @juliendevilliers.bsky.social · 22/01/2026
Check it out! Daily fluctuations of human smell, with behavioural and molecular synchronisation of mosquitoes smell and attraction! And icing on the cake a new timeless mutant line...
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Clement Vinauger @thevinaugerlab.bsky.social · 22/01/2026
Check out this new preprint from the lab: www.biorxiv.org/content/10.6... Lan Lou, @juliendevilliers.bsky.social, @karthikeyanc.bsky.social, @lahonderelab.bsky.social, the Tu Lab, and @joshuabenoit.bsky.social show that mosquito olfactory rhythms are synced with daily rhythms in how we smell.
biorxiv.org
Temporal synchrony between human odor rhythms and mosquito olfactory preference shapes host attraction
For anthropophilic mosquitoes such as Aedes aegypti, aligning host-seeking with human availability enhances foraging efficiency and reproductive success. Although time of day modulates mosquito activity and olfactory sensitivity, it remains unknown whether human hosts display rhythmic changes in odor cues and whether mosquitoes adjust their sensory responses accordingly. Here, we combine chemical, behavioral, genetic, and transcriptomic approaches to reveal that both mosquitoes and their human hosts in this interaction are temporally synchronized. Gas chromatography-mass spectrometry showed systematic daily shifts in human body odor composition between morning and evening. Correspondingly, mosquitoes prefer host odors that match their own active phase, a time-specific preference abolished in timeless mutants and under constant darkness. Silencing the timeless gene further induced an aversion for the host scent under light-dark conditions. Transcriptomic analysis of mosquito heads and antennae uncovered rhythmic expression of sensory and neuromodulatory genes, driven by both circadian and light-dark cycles and which peaks during mosquitoes' active periods, with rhythmic co-expression networks collapsing in timeless knockouts. Together, these results show that mosquito attraction to humans is temporally tuned by the interplay of host odor rhythms and mosquito sensory rhythms, revealing a previously unrecognized form of interspecific temporal synchronization in vector-host interactions. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, R01AI155785, R21AI166633, R01AI148551 National Institute of Food and Agriculture, VA-160212
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Stanley Heinze @stanley-heinze.bsky.social · 18/12/2025
Ever wanted to know how the visual system of a long distance migratory moth looks like? Then you'll find your answers in our new paper. Finally out, after about a decade of collecting data by a group af amazing co-authors. Find it here, open access: link.springer.com/article/10.1...
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Rochelle Meah @rochellemeah.bsky.social · 17/12/2025
Multiple anthropogenic stressors can negatively impact species but can a single stressor also have multiple, concurrent impacts? Here we show that light pollution creates several simultaneous impacts to the nocturnal movement ecology of a moth and a spider: tinyurl.com/5eku5bff (1/5)
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VectorByte @vectorbyte.bsky.social · 05/12/2025
Learn about using the VectorByte Databases, VecTraits and VecDyn, to answer cool questions! Save the date for the VectorByte training workshop at Virginia Tech, together with EEID, May 30-June 1, 2026!!
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Stephen Montgomery @ebablab.bsky.social · 21/11/2025
🚨RA/PhD position available in evolutionary neurobiology 🚨 Working on a deep dive into circuit changes during mushroom body expansion in Heliconius butterflies @camzoology.bsky.social - employment benefits - 4 years funding - 1000% fun Deadline: 14/1/2026 Details: www.cam.ac.uk/jobs/researc...
Shades of blue and red in a slice through an immuno stained brain showing some deliciously lovely looking mushroom body lobes - ripe for investigation during a funded PhD - and the central complex. Image credit: Dr Max Farnworth
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Gabriele Uhl @uhl-lab.bsky.social · 22/11/2025
Spiders that experience vibrations, visual stimuli, both or none during development do not differ strongly in the size of their brain areas. This is a surprising finding. Even more surprising is that siblings react alike. See our new publication in the J. comp. Neurology. doi.org/10.1002/cne.... 🧪🕷
We performed an experiment with two spider species, one web building and one cursorial species. Juveniles experienced vibrations or visual input or both or no stimuli. Their brain areas did not differ significantly. However, siblings reacted in a similar way.
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Lars Chittka @larschittka.bsky.social · 14/11/2025
The earliest mature debate about animal consciousness occurred around 1900 and centred on the insects. We cover this rich history in this new article, as well as some more recent developments on the topic: royalsocietypublishing.org/.../10.../rs...
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Molly Schumer @mollyschumer.bsky.social · 12/11/2025
I am so excited to share new work on a TE insertion that regulates iridescence in swordtails, led by fantastic grad student @nadiahaghani.bsky.social and with help from many coauthors! In a time that has been so difficult to navigate, this & other projects have kept my spirits up: shorturl.at/NE65A
shorturl.at
Insertion of an invading retrovirus regulates a novel color trait in swordtail fish
For over a century, evolutionary biologists have been motivated to understand the mechanisms through which organisms adapt to their environments. Coloration and pigmentation are remarkably variable wi...
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Lena Riabinina @lenariab.bsky.social · 11/11/2025
Please drop me a line is you are interested to work in my lab and are eligible for the CSC funding!
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Sam England @samjakeengland.bsky.social · 10/11/2025
Do you work (/want to work) with caterpillars? Or sensory systems? Or BOTH?! Well good golly do we have the paper for you! We explain the senses that caterpillars have, what they use them for, and how anthropogenic sensory pollution might be messing it all up 🐛 doi.org/10.1007/s003...
doi.org
The sensory ecology of caterpillars - Journal of Comparative Physiology A
Caterpillars (larval Lepidoptera) are one of the most ecologically and evolutionarily significant taxa on Earth. As both feeders and food, they shape the dynamics of enumerate ecosystems on land. Key ...
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Chloé Lahondère @lahonderelab.bsky.social · 06/11/2025
Check out our newest paper on mosquito sugar feeding! 🦟🌸 This study was led M. VanderGiessen, F. Upshur & M. Cartadena-Guzman. A great collaboration with L. Escobar & @thevinaugerlab.bsky.social! @globalchangebio.bsky.social @vtbiochemistry.bsky.social academic.oup.com/jme/article-...
academic.oup.com
Effect of landscape heterogeneity on mosquito abundance and sugar feeding behavior
Abstract. Mosquito-borne diseases pose a dire threat to humanity, claiming over 700,000 lives annually. At the local scale, the interplay between several e
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Olivia Goldman PhD @oliviagoldman.net · 30/10/2025
Excited to announce the final version of the Mosquito Cell Atlas is out now in @cellpress.bsky.social!! 🦟🩸 There is SO much left to find & investigate in this dataset (& the rich biology of the Aedes aegypti mosquito)! We hope this helps scientists in many fields! www.cell.com/cell/fulltex...
cell.com
A single-nucleus transcriptomic atlas of the adult Aedes aegypti mosquito
A comprehensive single-nucleus RNA-seq atlas of >367,000 nuclei from male and female Aedes aegypti mosquitoes reveals sexual dimorphism in sensory systems and brain cell types and widespread co-expres...
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Journal of Animal Ecology @animalecology.bsky.social · 28/10/2025
🌷New Research highlight showcases Arrowsmith et al. (2025), which shows that temperature alone can shift pollinators’ floral choices in diverse plant–pollinator communities. Such thermally-driven species interaction rewiring may have important consequences. ➡️ buff.ly/i5QrFjd @blancaac.bsky.social
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Tim Janicke @timjanicke.bsky.social · 22/10/2025
Does #SexualSelection fuel #Speciation? Our new #meta-analysis of comparative studies finds support for a positive relationship, but the rather moderate global effect suggests it’s not necessarily a dominant force. doi.org/10.1093/evle...
doi.org
Sexual selection and speciation: a meta-analysis of comparative studies
Abstract. Understanding the drivers of biodiversity is a central goal in evolutionary biology. In particular, sexual selection has long been proposed as a
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International Society for Neuroethology @neuroethology.org · 23/10/2025
🚨 New paper out in #JCP-A @springernature.com "Divergent sensory transcriptomic profiles in positive and negative learning in Bicyclus Anynana butterflies" by Yi Teng Ter & Erica Westerman #Neurogenomics #VisualLearning #Lepidoptera 🧪🧠🦋 ↘️ link.springer.com/article/10.1... ↙️
link.springer.com
Divergent sensory transcriptomic profiles in positive and negative learning in Bicyclus Anynana butterflies - Journal of Comparative Physiology A
Journal of Comparative Physiology A - Mate preference learning, where individuals learn to prefer or avoid specific phenotypes during mate selection, is pervasive across animal taxa and influences...
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Peter Mulhair @petermulhair.bsky.social · 17/10/2025
Latest work out today in @currentbiology.bsky.social We find the fly development gene bicoid is much older than previously thought (~20 million yrs older!) 🪰🧬 To pinpoint its origins we tackled the Diptera phylogeny, providing some resolution (many open questions remain). 🔗 tinyurl.com/2vyuevpy
cell.com
Revised evolutionary relationships within Brachycera and the early origin of bicoid in flies
Mulhair et al. uncover a functional bicoid in non-cyclorrhaphan flies, pushing the gene's origin back by ∼20 million years. Reassessing the Diptera phylogeny using the largest dataset to date permits ...
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Julien Devilliers @juliendevilliers.bsky.social · 15/10/2025
🚨 PhD position available! Study the implications of vision on sleep using drosophila as a model. Apply by end of November
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RobertoFeuda @robertofeuda.bsky.social · 14/10/2025
Interested in joining my lab to study the evolution and development of monoaminergic neurons? You can now apply for the Giuseppe Levi Post-Doc Fellowship (2 years, Neurobiology, EU citizens). Deadline: 10 Nov 2025 – 18:00 For more info selezionionline.lincei.it and email me!
selezionionline.lincei.it
Online Applications – Accademia Nazionale dei Lincei - Home
Online Applications – Accademia Nazionale dei Lincei
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ARC Centre of Excellence for Plant Success @coeplantsuccess.bsky.social · 07/10/2025
📢 New publication 'From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions' by Arlie Macdonald, Maddie James, Jonathan Mitchell and Barbara Holland in Genome Biology and Evolution 🧪 doi.org/10.1093/gbe/... #Phylogenomics
doi.org
From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions
Abstract. Mapping genotypes to phenotypes is a fundamental goal in biology. Phylogenetic Genotype to Phenotype mapping methods are a relatively new set of
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STAR Protocols @cp-starprotocols.bsky.social · 27/09/2025
Protocol for multiplex whole-mount RNA fluorescence in situ hybridization combined with immunohistochemistry in the mosquito brain #protocol #starprotocols #cellpress
dlvr.it
Protocol for multiplex whole-mount RNA fluorescence in situ hybridization combined with immunohistochemistry in the mosquito brain
Advances in sequencing technologies have enabled transcriptional profiling of previously understudied yet critical species, such as mosquitoes. Here, we present a protocol for multiplex whole-mount RNA fluorescence in situ hybridization combined with immunohistochemistry in the Anopheles gambiae brain. We describe steps for dissection, fixation, probe hybridization, hybridization chain reaction (HCR) probe detection, and primary antibody application. We then detail procedures for tissue preparat...
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Will Allen @wlallen.bsky.social · 25/09/2025
📢🦋 Our paper ‘Global selection on insect antipredator coloration’ is out and featured on the cover of @science.org We ran a huge experiment to find out how ecological context favours camouflage and warning colouration as antipredator strategies. 1/6 www.science.org/doi/10.1126/...
A white-fronted bee-eater (Merops bullockoides) decides whether to consume a warningly colored white-barred acraea butterfly (Telchinia encedon). Photo (c) Mike Rowe
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🧬Jacob L Steenwyk @jlsteenwyk.bsky.social · 17/09/2025
Original publication here: journals.plos.org/plosbiology/... Many thanks to @roliroberts.bsky.social for their professional handling of the manuscript
journals.plos.org
OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Molecular evolution studies often rely on single-copy orthologs. This study presents OrthoSNAP, an algorithm that identifies and extracts additional single-copy orthologs nested within larger gene fam...
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Elina Mäntylä @elinamantyla.bsky.social · 17/09/2025
Ivimey-Cook @eivimeycook.bsky.social et al. From policy to practice: progress towards data- and code-sharing in ecology and evolution royalsocietypublishing.org/doi/full/10.... #OpenScience #OpenData
royalsocietypublishing.org
From policy to practice: progress towards data- and code-sharing in ecology and evolution | Proceedings of the Royal Society B: Biological Sciences
Data and code are essential for ensuring the credibility of scientific results and facilitating reproducibility, areas in which journal sharing policies play a crucial role. However, in ecology and ev...
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c0nc0rdance @c0nc0rdance.bsky.social · 17/09/2025
The buff-tip moth (Phalera bucephala) has mastered a very particular kind of camouflage. When they close their wings up, they resemble a broken twig. Native to large parts of Europe, there's regional pattern variation that reflects the local tree species. This one best resembles birch twigs?
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Molecular Biology and Evolution @molbioevol.bsky.social · 12/09/2025
Carruthers @mgenner.bsky.social et al integrate retinal transcriptomics, phenotypic analyses and visual modeling to uncover rapid sensory divergence associated with an ecological transition between habitats with different light conditions. 🔗 doi.org/10.1093/molbev/msaf204 #evobio #molbio #cichlids
doi.org
Rapid Divergence of Visual Systems and Signaling Traits to Contrasting Light Regimes During Early Speciation of African Crater Lake Cichlid Fish
Abstract. Sensory adaptation is widely hypothesized to drive ecological speciation, yet empirical evidence from natural populations undergoing early stage
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Arnaud Martin @evolvwing.bsky.social · 02/09/2025
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Universität Konstanz @uni-konstanz.de · 03/09/2025
Bees use the sun's position in the sky for navigation – even on cloudy days. An international team involving researchers from #UniKonstanz has discovered how a particular part of bees' eyes helps them do this: t1p.de/ybjmj
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George Kolyfetis @gkolyfetis.bsky.social · 03/09/2025
Our findings on bees' photoreceptors are now officially published in Biology Letters of the Royal Society Publishing!! Thanks again for a productive collaboration @jjfosterlab.bsky.social and @gregoeur.bsky.social !! royalsocietypublishing.org/doi/10.1098/...
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James McInerney @jomcinerney.bsky.social · 29/08/2025
New preprint reveals bacteria can't just collect all resistance genes like Pokemon cards. We found mutually exclusive evolutionary pathways to multidrug resistance in E. coli & P. aeruginosa - some resistance mechanisms actively prevent others from coexisting www.biorxiv.org/content/10.1...
biorxiv.org
Genomic constraints shape the evolution of alternative routes to drug resistance in prokaryotes
Background Variation within the prokaryotic pangenome is not random, and natural selection that favours particular combinations of genes appears to dominate over random drift. What is less clear is wh...
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Julien Devilliers @juliendevilliers.bsky.social · 25/08/2025
New in the field and interested in doing scRNA-seq for cheap? Here an in-house protocol for SPLiT-seq from cell dissociation to bioinformatic analysis! I personally used it on mosquito heads during my PhD. link.springer.com/protocol/10....
link.springer.com
An Optimized SPLiT-Seq Protocol for Insects
Single-cell RNA-sequencing revolutionized our approach of transcriptomic studies, enabling to analyze gene expression across cell type in a tissue. Here we introduce an optimized cell dissociation and...
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José Cerca @naturalselection.bsky.social · 19/08/2025
The 2025-26 Eco-Evo job list is out. Good luck to those applying! docs.google.com/spreadsheets...
docs.google.com
ecoevojobs.net 2025-26
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Daniel Kronauer @danielkronauer.bsky.social · 21/08/2025
If you’re interested in ants, olfaction, gene regulation, or all of the above, here’s a new preprint from the lab for you. It describes an unorthodox mechanism of transcriptional interference by which ant olfactory sensory neurons produce a single functional receptor. www.biorxiv.org/content/10.1...
biorxiv.org
Transcriptional Interference Gates Monogenic Odorant Receptor Expression in Ants
Communication is crucial to social life, and in ants, it is mediated primarily through olfaction. Ants have more odorant receptor (OR) genes than any other group of insects, generated through tandem d...
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