iiinova — where your digital self keeps evolving

de.NBI & ELIXIR Germany @denbi.bsky.social · 28/09/2026

📣 Job Announcement | Charité – Universitätsmedizin Berlin As part of the ImmunoPreCept Cluster of Excellence, Charité is inviting applications for: 🔬 4 x W2 Fixed-Term Professorships (limited to 5 years) 🔗 Learn more & apply here: www.denbi.de/news1/2160-4... #Jobs #Academia #Professorship

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de.NBI & ELIXIR Germany @denbi.bsky.social · 24/09/2026

📢 Next Training Clinic: How to Avoid AI Problems in Training Courses Struggling with learner reliance on AI or navigating AI tools in your teaching? Join us to gain practical strategies and share experiences! 💡 Open to all! 📅 8 Oct 13:00-14:00 🔗 www.denbi.de/training-cou... #TrainTheTrainer #AI

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de.NBI & ELIXIR Germany @denbi.bsky.social · 23/09/2026

☁️ Want to showcase your cloud-powered research to the community? Submit an abstract for a talk or poster at the de.NBI Cloud User Symposium! 📅 Nov 5–6, 2026 📍 Frankfurt 🧵 Register here: www.denbi.de/de-nbi-event... #deNBI #Bioinformatics #CloudComputing

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de.NBI & ELIXIR Germany @denbi.bsky.social · 22/09/2026

de.NBI at EGI2026 in Ghent this week – two contributions on Wednesday: a talk on de.NBI cloud infrastructure and a live SimpleVM demo. Come find us! Demo: indico.egi.eu/event/6931/c... Talk: indico.egi.eu/event/6931/c... #EGI2026 #deNBI #SimpleVM #Ghent

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de.NBI & ELIXIR Germany @denbi.bsky.social · 22/09/2026

🧬 Hands-on Course: Deep Learning in Bioinformatics 📅 Nov 30 – Dec 2, 2026 📍 Gießen Learn data preprocessing, training neural networks with Keras & Kerashub, and applying LLMs to biological data! 🐍 Req: Python & Linux -> www.denbi.de/training-cou... #DeepLearning #Bioinformatics #Python #AI

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Max Delbrück Center @mdc-berlin.bsky.social · 17/09/2026

Congratulations to Klaus Rajewsky on receiving Emory University’s 2026 Max Cooper Prize in Immunology! 🎉 The award recognizes more than six decades of contributions that helped shape modern immunology. Klaus continues his research at the #mdcBerlin today. More: 👉 www.mdc-berlin.de/news/news/kl...

Portrait of Klaus Rajewsky resting his head on his hand against a dark background. Overlaid text reads: “Congratulations! Max Cooper Prize in Immunology for Klaus Rajewsky.”

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Reposted by de.NBI & ELIXIR Germany

ELIXIR Europe @elixir-europe.org · 18/09/2026

From 31 Aug to 4 Sept 2026, ELIXIR was in Geneva🇨🇭, for #ECCB2026, organised by @sib.swiss (#ELIXIR_Switzerland). 🙌 ELIXIR contributed a track programme, a poster track, ELIXIR Node-led workshops and tutorials, and a booth. Read the news 👉 elixir-europe.org/news/elixir-eccb-…

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de.NBI & ELIXIR Germany @denbi.bsky.social · 17/09/2026

🧬 Master MS-based omics! Join our hands-on course on LC-MS/MS ID, quantitation, Proteomics, Metabolomics & RNA. 📅 Sep 26-27 | 9-17h 📍 Singapore 💻 Bring laptop & your own data to discuss with experts! Infos: www.denbi.de/training-cou... #MassSpectrometry #Bioinformatics #Omics

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Reposted by de.NBI & ELIXIR Germany

ELIXIR Europe @elixir-europe.org · 14/09/2026

The ELIXIR-funded FAIRyMAGs project has released a set of 🙌 openly available workflows, training materials and example #datasets to support researchers working with metagenome-assembled genomes 👉 loom.ly/yh_aNFE @ifb-elixir-fr.bsky.social @ebi.embl.org @denbi.bsky.social @elixir-it.bsky.social

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de.NBI & ELIXIR Germany @denbi.bsky.social · 10/09/2026

@denbi.bsky.social was this week in Louvain la Neuve for the PHENET General Assembly #Bioinformatics #PlantPhenomics

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Reposted by de.NBI & ELIXIR Germany

Dr. Leonid Kostrykin @kostrykin.bsky.social · 09/09/2026

Our article about Galaxy as a workbench for bioimage data management & analysis, training & community practices, has been published in the Journal of Microscopy (Wiley). Congratulations to all authors and contributors. Special thanks to @beatrizserrano.bsky.social. CC @denbi.bsky.social #UseGalaxy

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Reposted by de.NBI & ELIXIR Germany

Nav @naveed-ishaque.bsky.social · 24/08/2026

Very happy to see our newest (non-)benchmark study up on @natmethods.nature.com: doi.org/10.1038/s415.... Its started with the SpaceHack 2.0 hackathon back in 2023, where we wanted to benchmark methods for spatial clustering/niche/domain detection. Turns out this is very hard to do well...

doi.org

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering - Nature Methods

Benchmarking spatially aware clustering is challenging. SACCELERATOR is an open-source, extensible framework that formalizes expert-guided spatial clustering analysis.

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SILVA @arb-silva.bsky.social · 26/08/2026

📢 We are excited to announce that the new SILVA 144 Release is now live! See more details here: www.arb-silva.de/news/item/si...

arb-silva.de

SILVA Release 144 is here

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EMBL Events @events.embl.org · 07/09/2026

At the start of 2026, EMBL lost long-serving colleague and Interim Director General Peer Bork. Join us in commemorating Peer and his legacy at the #EMBLBorkMemorial. Submit your abstract by 10 November: s.embl.org/pbs27-01-bl

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de.NBI & ELIXIR Germany @denbi.bsky.social · 07/09/2026

Today the @denbi.bsky.social Summer School "Bioinformatics for Proteomics" started in Bochum

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Reposted by de.NBI & ELIXIR Germany

Nav @naveed-ishaque.bsky.social · 07/09/2026

The OpenProblems.bio team will be the driving force behind "SpaceHack 5.0: Multi-Modal Spatial Benchmarking and FAIR Data Standards". We'll be covering spatial omics, foundation models, data archive and lots more. Details: www.denbi.de/de-nbi-event... Registration: www.denbi.de/helpdesk?opt...

openproblems.bio

Open Problems | Single-Cell Benchmarks

An open, community-driven platform defining and benchmarking the hardest open problems in single-cell analysis.

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Boas Pucker @bpucker.bsky.social · 04/09/2026

Many thanks to @denbi.bsky.social for providing excellent computational resources for this project

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de.NBI & ELIXIR Germany @denbi.bsky.social · 04/09/2026

🧬 Advanced Constraint-Based Modeling with CNA & CNApy (Part 2) 🗓️ Date: 19-Nov-2026, 2:00–6:00 PM (UTC+1) | 📍 Online Master advanced metabolic network modeling: Phase planes, Minimal Cut Sets, enzyme constraints & COBRA-k. Includes live demos & hands-on exercises! 👉 www.denbi.de/training-cou...

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de.NBI & ELIXIR Germany @denbi.bsky.social · 02/09/2026

🚨 REGISTRATION IS NOW OPEN for BioHackathon Germany 2026! 🚨 The wait is over—you can now officially secure your spot! Work on 13 cutting-edge projects in Spatial Omics, RNA models & FAIR data. ⚠️ On-site seats are limited! 👉 Register now: www.denbi.de/de-nbi-event... #Bioinformatics #OpenScience

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de.NBI & ELIXIR Germany @denbi.bsky.social · 01/09/2026

📢 Call for Contributions: de.NBI & de.KCD Cloud User Symposium 2026 Join us Nov 5–6 in Frankfurt! Submit an abstract on your de.NBI Cloud workflows to share insights & shape cloud infrastructure. Places limited! 🔗 www.denbi.de/de-nbi-event... #CloudComputing #Bioinformatics #OpenScience

denbi.de

1st Cloud User Symposium

The 'German Network for Bioinformatics Infrastructure – de.NBI' is a national, academic and non-profit infrastructure supported by the Federal Ministry of Education and Research providing bioinformati...

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de.NBI & ELIXIR Germany @denbi.bsky.social · 01/09/2026

🧫 Constraint-based Modeling of Metabolic Networks (Module 1) Learn metabolic flux analysis & constraint-based modeling using CellNetAnalyzer & CNApy! 📅 Nov 5, 2026 | 14:00–18:00 CET 📍 Online | Hands-on exercises 🆓 No prerequisites! 🔗 Register: www.denbi.de/training-cou... #SystemsBiology

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de.NBI & ELIXIR Germany @denbi.bsky.social · 28/08/2026

🚀 BioHackathon projects are LIVE! From spatial omics to RNA models, explore 13 exciting challenges led by global experts. 📍 Location: Göttingen (On-site seats are limited, online attendance possible) ⏰ Participant registration opens NEXT WEEK! Check out the full list: www.denbi.de/de-nbi-event...

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de.NBI & ELIXIR Germany @denbi.bsky.social · 26/08/2026

It is with deep sadness that de.NBI bid farewell to Prof. Dr. Reinhard Schneider. A vital part of de.NBI since 2015 & former SAB Chair, his leadership and wisdom deeply shaped our network. We lost a pioneer & cherished friend. Our thoughts are with his family. 🕯️ www.denbi.de/news/2136-in...

denbi.de

In Memoriam: Prof. Dr. Reinhard Schneider

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de.NBI & ELIXIR Germany @denbi.bsky.social · 26/08/2026

Huge congrats to the SpaceHack team! 🎉 A project born at BioHackathon Germany is out today in Nature Methods! 🚀🧬 📄 www.nature.com/articles/s41... 💡 www.nature.com/articles/s41... Proving how BioHackathon Germany fuel high-impact #OpenScience! 🌐 #BioHackathonDE #deNBI

nature.com

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering - Nature Methods

Benchmarking spatially aware clustering is challenging. SACCELERATOR is an open-source, extensible framework that formalizes expert-guided spatial clustering analysis.

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de.NBI & ELIXIR Germany @denbi.bsky.social · 25/08/2026

How does ELIXIR engage with #industry? New ELIXIR onboarding video featuring Nils-Christian Lübke on de.NBI / ELIXIR Germany's industry engagement – part of the PeoplePulse project coordinated by Lisanna Paladin and Isabela Paredes Cisneros. www.youtube.com/watch?v=7m-4... #Bioinformatics

youtube.com

ELIXIR faces – How does ELIXIR engage with industry?

YouTube video by ELIXIR Europe

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de.NBI & ELIXIR Germany @denbi.bsky.social · 21/08/2026

What is the ELIXIR-GOBLET Train-the-Trainer programme? New ELIXIR onboarding video featuring Lisanna Paladin (@denbi.bsky.social) – part of the PeoplePulse project coordinated by Lisanna and Isabela Paredes Cisneros. www.youtube.com/watch?v=1HRB... @elixir-europe.org #Bioinformatics #Training

youtube.com

ELIXIR faces – What is the ELIXIR-GOBLET Train-the-Trainer programme?

YouTube video by ELIXIR Europe

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de.NBI & ELIXIR Germany @denbi.bsky.social · 19/08/2026

What is an ELIXIR Node? de.NBI (ELIXIR Germany) is featured in a new ELIXIR onboarding video alongside ELIXIR Spain and Switzerland. Irena Maus shares how the German Node operates – from 24 partner organisations to the de.NBI Cloud. www.youtube.com/watch?v=xj5p... #ELIXIR #deNBI #Bioinformatics

youtube.com

ELIXIR faces – What is an ELIXIR Node?

YouTube video by ELIXIR Europe

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de.NBI & ELIXIR Germany @denbi.bsky.social · 18/08/2026

🌱 CLI Basics for Life Scientists 🗓 21.09.–25.09.2026 | Bonn, Germany Master the Command Line Interface, de.NBI SimpleVM & big data plant genomics! No prior bioinformatics skills needed (basic molecular biology required). 🛠 rsync, samtools, minimap, conda etc. www.denbi.de/training-cou...

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de.NBI & ELIXIR Germany @denbi.bsky.social · 17/08/2026

🛠️ Join the @galaxyproject.bsky.social Tool Development Workshop in Freiburg (Oct 7–9, 2026) supposed by @denbi.bsky.social! Learn to wrap, test, and publish your own tools using Planemo, Docker & VS Code with 1-on-1 support from Galaxy developers. 📍 Freiburg ℹ️ Info: www.denbi.de/training-cou...

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Reposted by de.NBI & ELIXIR Germany

EGI @egieinfra.bsky.social · 17/08/2026

How are national e-infrastructures evolving across Europe? Join us at #EGI2026 on Sep 23 in Ghent for a session with guests from SURF, @denbi.bsky.social and the Polish Academy of Sciences! ⏳ Register by 5 Sep go.egi.eu/EGI2026_Regi... 🔗 indico.egi.eu/event/6931/s...

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IPB Halle @ipbhalle.bsky.social · 06/08/2026

🧠🧬 𝗠𝗮𝗸𝗶𝗻𝗴 𝗯𝗶𝗼𝗹𝗼𝗴𝗶𝗰𝗮𝗹 𝗱𝗮𝘁𝗮 𝘁𝗮𝗹𝗸 The IPB is coordinating a new AI infrastructure initiative within the @leibniz-gemeinschaft.de to unlock insights from biological big data, from molecules to ecosystems. www.ipb-halle.de/en/article/a... #AI #LifeSciences #BigData #Bioinformatics

A digital split image showing a complex AI model of interconnected nodes and points on the left, symbolizing data or communication networks, and a close-up of a circuit board with binary code on the right, representing technology and computing.

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de.NBI & ELIXIR Germany @denbi.bsky.social · 05/08/2026

Did you miss our last joint webinar with @ghga.bsky.social 🧬💻? "Beyond the Script: Building Reproducible and Scalable Workflows with @nextflow.io" with Dr. Kübra Narci (Nextflow Ambassador / @dkfz.bsky.social) is now live on YouTube! 📺 Watch the full talk here: www.youtube.com/watch?v=LHfX...

youtube.com

Beyond the Script: Building Reproducible and Scalable Workflows with Nextflow with Kübra Narci

YouTube video by GHGA - The German Human Genome-Phenome Archive

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FAIRagro @fairagro.bsky.social · 05/08/2026

☝️ Announcing 2 new trainings: Sep 30, “Kickstart Your Data Publication: A Hands-On Guide to Life Science Repositories” with @denbi.bsky.social and Oct 5 to 9, contributing to the “Seasonal School on Data Management in Biodiversity and Environmental Science” by NFDI4Biodiversity. More: t1p.de/8gxhv

t1p.de

Trainings - FAIRagro

Du möchtest etwas über FDM lernen, deine Data Literacy Skills ausbauen oder dich über rechtliche Aspekte im Umgang mit Forschungsdaten weiterbilden? Dann bist du hier genau richtig. In unserem Trainin...

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de.NBI & ELIXIR Germany @denbi.bsky.social · 04/08/2026

🚀 Join us for our upcoming CLI Basics for Life Scientists Workshop 📅 Sept 21–25, 2026 📍 Bonn Learn to set up & administer your own de.NBI SimpleVM, handle big data transfers, and automate workflows using bash scripts & piping—applied to real-world plant genomics data! www.denbi.de/training-cou...

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SILVA @arb-silva.bsky.social · 13/07/2026

Public Service Announcement: SILVA has joined the Bluesky community!   📢🎉 SILVA is part of the the DSMZ Digital Diversity consortium, a Global Core Biodata Resource and an ELIXIR Core Data Resource. www.arb-silva.de Follow for the latest information and announcements 🦠🔬👩‍🔬

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de.NBI & ELIXIR Germany @denbi.bsky.social · 09/07/2026

🚀 Looking back at the de.KCD Industry Forum 2026! Our 'Cloud Data Security' event was a resounding success! Key takeaways: - Networks: New synergies & concrete project ideas. - Insights: Embedding data security from hardware to AI level. Thank you to everyone! What was your highlight? 👇

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de.NBI & ELIXIR Germany @denbi.bsky.social · 09/07/2026

⚠️ Deadline Alert! Do you have a project idea for the BioHackathon Germany 2026? 🧬 You have until next Wednesday, July 15, to submit your proposals. Let's hack together this December in Göttingen! Submit your proposal here: www.denbi.de/de-nbi-event... #BioHackathon2026 #Bioinformatics #OpenScience

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The German Human Genome-Phenome Archive @ghga.bsky.social · 02/07/2026

🚀 Ready to level up your data analysis? Join @denbi.bsky.social and #GHGA for our next webinar: Building Reproducible & Scalable Workflows with #Nextflow! Learn how to build portable, parallelized pipelines. 📅 16 July 2026 @ 13:00 CEST 🔗 Register here: t1p.de/fxx8g #Bioinformatics #ELIXIR

Event poster for “Beyond the Script: Building Reproducible and Scalable Workflows with Nextflow” with Kübra Narci. Scheduled for 10th June 2026 at 13:00 CEST. Organised by GHGA, ELIXIR Germany, and de.NBI.

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de.NBI & ELIXIR Germany @denbi.bsky.social · 30/06/2026

🧬 PATCH: A toolbox for large-scale pangenomics, from phylogeny to openness prediction. Scales to thousands of genomes! 🛠️ Features: Local alignments, core genome detection, a standardized SOCKS interface, & web tools. 🎓 Free for academics. 👉 www.denbi.de/services-acc... #Bioinformatics #OpenScience

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The German Human Genome-Phenome Archive @ghga.bsky.social · 24/06/2026

only one week left! Save your spot today: t1p.de/4je1v

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NFDI4Microbiota @nfdi4microbiota.bsky.social · 26/06/2026

Research data is growing fast. How can we efficiently organize and connect it? Don’t miss this NFDITalk on Aruna, a federated platform that links data, metadata, storage, and repositories - making research data FAIR from the start. This service is supported and co-developed by #NFDI4Microbiota!

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de.NBI & ELIXIR Germany @denbi.bsky.social · 26/06/2026

🧠 de.NBI Strategy World Café – done! Our PIs came together in Frankfurt to shape the future of de.NBI. Thanks to all PIs, to Irena Maus for organizing, and to Berinfor for accompanying the process. The feedback is now with our writing team. Watch this space. 🔜 #deNBI #Bioinformatics #Strategy

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Rob Waterhouse @rmwaterhouse.bsky.social · 26/06/2026

Last day of #biodiversity #bioinformatics summer school with @denbi.bsky.social & @sib.swiss - great presentation from Topic 4 Comparative #Genomics group

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de.NBI & ELIXIR Germany @denbi.bsky.social · 25/06/2026

🌿 Biodiversity Summer School 2026 is in full swing in – with participants from Europe, the USA, Canada, and Costa Rica exploring eDNA, pangenomes, comparative genomics, and more. Organized by @sib.swiss and @denbi.bsky.social #Biodiversity #Bioinformatics #deNBI #ELIXIR

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de.NBI & ELIXIR Germany @denbi.bsky.social · 25/06/2026

The Galaxy Europe / de.NBI team wrapped up #GCC2026 in Clermont-Ferrand 🇫🇷 – with a poster on de.NBI infrastructure, a lightning talk by Sanjay on MetaProFi, and de.NBI as a conference sponsor. Great to welcome new PhD student Franziska to her first GCC! 🔗 galaxyproject.org/events/gcc2026/