iiinova — where your digital self keeps evolving

Reposted by Jacques Dainat

bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 05/03/2026

ViroSeek: a viral detection pipeline for second-generation sequencing www.biorxiv.org/content/10.64898/20…

Jacques Dainat @jacquesdainat.bsky.social · 14/04/2026

AGAT v1.7.0 is out 🚀 🧵 Parallel parsing of GXF files (GFF/GTF) ⚡ Faster, even on a single core 💾 Lower memory usage and many improvements & fixes github.com/NBISweden/AGAT #bioinformatics #genomics

github.com

GitHub - NBISweden/AGAT: Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/ - NBISweden/AGAT

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Reposted by Jacques Dainat

bioinfoblogs @bioinfoblogs.bsky.social · 16/02/2026

📝 Pick a License, Not Any License ✍️ Paired Ends (Stephen Turner's blog)

blog.stephenturner.us

Pick a License, Not Any License

Article de Paired Ends (Stephen Turner's blog)

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Jacques Dainat @jacquesdainat.bsky.social · 05/02/2026

🚀 AliNe v1.6.0 is out! ✨ Now featuring: • Up to 20 alignment algorithms • CRAM output support • New parameter to filter unmapped reads • Automatic TSV comparison table generated when statistics are enabled github.com/Juke34/AliNe

github.com

GitHub - Juke34/AliNe: Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease - Juke34/AliNe

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Reposted by Jacques Dainat

bioinfoblogs @bioinfoblogs.bsky.social · 27/01/2026

📝 Scientific production in the era of large language models ✍️ Paired Ends (Stephen Turner's blog)

blog.stephenturner.us

Scientific production in the era of large language models

Article de Paired Ends (Stephen Turner's blog)

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Reposted by Jacques Dainat

Stephen Turner @stephenturner.us · 27/01/2026

nf-core/proteinfamilies: A scalable pipeline for the generation of protein families academic.oup.com/gigascience/... 🧬💻🧪

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Jacques Dainat @jacquesdainat.bsky.social · 26/11/2025

Really liking the idea and output of GAQETv2 - such a cool tool for structural genome annotation QC!! www.protocols.io/view/structu...

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Jacques Dainat @jacquesdainat.bsky.social · 24/03/2025

Glad to attend the @nf-co.re #Hackathon from Montpellier! Great collaboration, inspiring discussions, and lots of fun 🚀 #bioinformatics

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Jacques Dainat @jacquesdainat.bsky.social · 15/03/2025

My latest #Nextflow pipeline has just been published in JOSS 🎉

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Reposted by Jacques Dainat

Ken Brewer @kenibrewer.bsky.social · 04/02/2025

Super excited for the distributed nf-core hackathon! We've got 36+ local sites being organized in over 20 countries! Registration is now open!

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Reposted by Jacques Dainat

Darby Saxbe @darbysaxbe.bsky.social · 04/02/2025

🚨BREAKING. From a program officer at the National Science Foundation, a list of keywords that can cause a grant to be pulled. I will be sharing screenshots of these keywords along with a decision tree. Please share widely. This is a crisis for academic freedom & science.

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Reposted by Jacques Dainat

Marcin Kierczak @marcinki.bsky.social · 20/01/2025

Registration to our #rstats Summer School RaukR 2025 Beyond The Basics is open! Don't miss the opportunity to elevate your R skillset! #r #datascience #bioinformatics #NBISweden @scilifelab.se

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Jacques Dainat @jacquesdainat.bsky.social · 21/01/2025

I’m thrilled to join the first cohort of 2025 Nextflow Ambassadors! seqera.io/blog/welcome... I'm still promoting #Nextflow and highlighting its incredible potential in #Bioinformatics, but with an Nextflow ambassador hat on now.It's good to be supported, thx @mribeirodantas.bsky.social @nextflow.io

seqera.io

Join us in welcoming the first cohort of 2025 Nextflow Ambassadors | Seqera

It's time to welcome the new ambassadors who joined the Nextflow Ambassador Program for the 2025.1 semester.

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Reposted by Jacques Dainat

Mahesh Binzer-Panchal @arcane-mahesh.bsky.social · 10/12/2024

NBIS is seeking a #Nextflow pipeline developer ( permanent position ) in Uppsala, Sweden. www.uu.se/en/about-uu/.... Come join us and don't forget to include your Github/Gitlab/developer profile.