iiinova — where your digital self keeps evolving

Reposted by Ken Brewer

Nextflow @nextflow.io · 18/06/2025

Nextflow Training Week is Back on June 23-27, 2025! 🎉 This free, self-paced training is perfect for newcomers looking to get started with Nextflow Sign up now: hubs.la/Q03sDmpr0

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Seqera @seqera.io · 06/05/2025

To continue advancing the vision that scientific innovation runs on software, we are thrilled to announce that Seqera has closed it’s Series B funding, led by Addition, with participation from Speedinvest, Talis, Amino Collective, BoxOne, and SNR! Learn more: hubs.la/Q03lcmf20

hubs.la

Scaling the Future of Scientific Software: Seqera Raises $26M Series B

Today, we're ecstatic to announce that Seqera has raised $26 million in Series B funding, led by Addition with participation from Speedinvest, Talis, Amino Collective, BoxOne, and SNR. This milestone ...

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Reposted by Ken Brewer

Nextflow @nextflow.io · 04/04/2025

🎉Episode 50 of the @nextflow.io Podcast is here! Host @ewels.bsky.social sits down with @kbestak.bsky.social, a PhD student and active contributor to the @nf-co.re community, working at the cutting edge of #SpatialOmics and #microscopy. 🎧Catch it here: hubs.la/Q03fVPNx0

hubs.la

Imaging pipelines and analysis, with Krešimir Beštak | The Nextflow Podcast by Seqera

Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC

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Ken Brewer @kenibrewer.bsky.social · 10/03/2025

I’m excited to share I will be speaking at #ABRF2025’s Annual Meeting in Las Vegas in March. This meeting brings together scientific leaders of biomolecular and bioinformatics core facilities to discuss how we can maximize the impact these valuable groups have within their institutions.

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Ken Brewer @kenibrewer.bsky.social · 07/03/2025

We've been working really hard on the new Nextflow training materials and they've turned out great. Take advantage of them on your own or by doing a watch party with a group next week during our Nextflow training week. 🚀

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Ken Brewer @kenibrewer.bsky.social · 20/02/2025

I'm doing a webinar next week about instrument-to-analysis automation of bioinformatics data processing!

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Ken Brewer @kenibrewer.bsky.social · 04/02/2025

Super excited for the distributed nf-core hackathon! We've got 36+ local sites being organized in over 20 countries! Registration is now open!

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Reposted by Ken Brewer

Angel Pizarro @angelp.bsky.social · 28/01/2025

This is a call out to bioinformatics developers that we are working to get all of NF-Core pipelines (and by extension most of Bioconda) to support Arm. Spot price for c8g.16xlarge (Graviton4) and it is below 60¢/hr. Or < 1¢ per physical CPU if your application supports Arm ...

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Reposted by Ken Brewer

Seqera @seqera.io · 28/01/2025

Attending #SLAS2025? Don't miss our exclusive Exhibitor Tutorial at 2:00 PM today in Room 24C! In this talk, we will discuss how @nextflow.io and Seqera are simplifying the analysis of large-scale sequencing and cell imaging data! 🔗 Can't attend? Get the recording instead: hubs.la/Q034lfYZ0

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Ken Brewer @kenibrewer.bsky.social · 10/01/2025

I'm attending SLAS! Come find me at our booth if you want to chat about anything Nextflow-related. I'll also be presenting a tutorial about setting up event-driven bioinformatics automation using Nextflow and Seqera Platform. I hope to see some of you there!

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Reposted by Ken Brewer

Stephen Turner @stephenturner.us · 02/01/2025

One of my favorite talks at the @nextflow.io summit was @kenibrewer.bsky.social's talk on how to NOT contribute to nf-core (using nf-core in your organization). He wrote a nice post on the @nf-co.re blog on building an nf-core style modules library for your organization seqera.io/blog/buildin...

seqera.io

Building an nf-core style modules library for your organization | Seqera

If you would like to bring nf-core’s approach to enabling code within your own organization, you can!

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Ken Brewer @kenibrewer.bsky.social · 07/01/2025

I wrote a blog article about some of the best parts of nf-core's modular tooling and how to use it within your own organization. This was an extension of a talk I gave at the Nextflow Summit late last year. Read or watch however you prefer! www.youtube.com/watch?v=Pn_B...

youtube.com

How to NOT contribute to nf-core: Best practices for using nf-core tooling in closed-source contexts

YouTube video by Nextflow

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Ken Brewer @kenibrewer.bsky.social · 31/12/2024

I didn't do any work directly on the OLE project during my time in the Breaker Lab, but I'm convinced that OLE is one of the most exciting bacterial #ncRNA to be discovered in recent years. Definitely check out this preprint if you'd like to see some really exciting RNA #cryoEM structures.

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Reposted by Ken Brewer

nf-core @nf-co.re · 19/12/2024

Our next hackathon is rapidly approaching! 🚀 - March 24-26, 2025 - Online / local distributed sites For the distributed sites, WE NEED YOU! 🎯 If you're able to book a meeting room and host a local site, fill in the local site registration form: nf-co.re/events/2025/...

nf-co.re

Hackathon - March 2025 (Online / Distributed)

A virtual hackathon with local sites to develop nf-core together

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Reposted by Ken Brewer

Josh Moore @joshmoore.bsky.social · 13/12/2024

Know someone looking for a new start in 2025? 🔍 Colleagues of #BlueSci, help flex this new social muscle! 🦾

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Reposted by Ken Brewer

Seqera @seqera.io · 10/12/2024

Exciting news! 🎉You can now try Chai-1, the SOTA model for biomolecular structure prediction by Chai Discovery, with Seqera! 👉 Check it out: github.com/seqeralabs/n...

github.com

GitHub - seqeralabs/nf-chai: POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction

POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction - seqeralabs/nf-chai

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Reposted by Ken Brewer

Stephen Turner @stephenturner.us · 05/12/2024

📍Pinned Post: Welcome to the papers with code feed! bsky.app/profile/did:... Papers from PubMed, bioRxiv, Bature, PLoS, etc, with links to GitHub will be included here. Anyone can post to this feed. See also: blog.stephenturner.us

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Ken Brewer @kenibrewer.bsky.social · 05/12/2024

Really exciting seeing the results from this incredible effort come out!

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Reposted by Ken Brewer

Nextflow @nextflow.io · 03/12/2024

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. 👇 #Jobs #Opportunities

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Reposted by Ken Brewer

Phil Ewels @ewels.bsky.social · 26/11/2024

This is really cool, definitely worth a look for anyone running in environments where container security is of concern (which should be.. everywhere, right?) 📦🔒✨ The magic here for me is being able to automatically halt pipeline runs if new container CVEs are released. Totally hands off but safe.

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Ken Brewer @kenibrewer.bsky.social · 26/11/2024

Really exciting to see @valenceai.bsky.social open-sourcing a large, curated, FAIR resource for #QuantumMechanics datasets. Pre-computing missing values needed to train #ML models is also fantastic from a #GreenAlgorithms perspective. #OpenScience

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Ken Brewer @kenibrewer.bsky.social · 26/11/2024

I'm really sad to see Spring Science winding down. Having worked closely with them in a previous role during a software evaluation, I was incredibly impressed by the quality of their tooling and the caliber of their team. x.com/kamens/status/185858513769040…

buff.ly

Ben Kamens on LinkedIn: Spring Science | 24 comments

Spring’s AI tools are loved by scientists. But we do not make enough money to continue running the company. Our tech gives ground-breaking new superpowers to… | 24 comments on LinkedIn

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Reposted by Ken Brewer

Phil Ewels @ewels.bsky.social · 23/11/2024

Love seeing the new @seqera.io AI starting to be used for real-world uses, after we've been testing it with toy examples for so long.. 🧪 Great little blog post by Lorena! 🎉 lpantano.github.io/post/2024/ne...

lpantano.github.io

Showcase: My Quick Dive into Pipeline Automation with Seqera AI | My bits

Example of automation with miniaml investment but good results

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Ken Brewer @kenibrewer.bsky.social · 21/11/2024

If you already have the Nextflow VSCode extension installed be sure to update to the latest version because it is 🔥🔥🔥. The language server that the extension includes has other cool implications for the future of Nextflow tooling. Attend the webinar for details!

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Ken Brewer @kenibrewer.bsky.social · 20/11/2024

If you missed the Nextflow Summit, this is a great way to catch up on major innovations coming to the Nextflow ecosystem. Seqera AI in particular is exceptional at writing proper DSL2 Nextflow code which has been a major frustration of mine with other code assistants. Highly recommend!

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Reposted by Ken Brewer

Nextflow @nextflow.io · 19/11/2024

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities

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Seqera @seqera.io · 18/11/2024

We believe in a future where science is open to all. Where community is the driving force of discovery. With no limits on knowledge, technology can take humanity to new frontiers. We are here to advance science for everyone through software. www.youtube.com/watch?v=uq5G...

youtube.com

Seqera, advancing science for everyone through software

YouTube video by Seqera

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Reposted by Ken Brewer

Loïc Lannelongue @loiclnlg.bsky.social · 11/11/2024

🚨We're recruiting! Interested in making science and computing more environmentally friendly? Now's the time! Very excited to build a research group at Cambridge Uni to expand our Green Algorithms work thanks to the support of the Wellcome Trust www.green-algorithms.org/join-us #AcademicSky #SciSky

green-algorithms.org

Interested in joining us?

The Green Algorithms project promotes environmentally sustainable computational science through an online calculator, training material and other tools.

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