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Jack Humphrey

@jack-humphrey.bsky.social
310 followers 290 following 4 posts

Genetics and omics of neurodegeneration in Mount Sinai, NYC. www.humphreylab.org

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Reposted by Jack Humphrey
UCSC Genome Browser @genomebrowser.bsky.social · 05/02/2026
We are happy to announce the recount3 tracks for hg38 and mm10: uniformly processed RNA-seq data from multiple studies, featuring intron data, split read counts, and splice junction motifs for cross-study comparisons and meta-analyses. Learn more at: bit.ly/recount3_track
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Reposted by Jack Humphrey
Itai Yanai @itaiyanai.bsky.social · 05/01/2026
"Choosing problems is the primary determinant of what one accomplishes in science." 'Now What?' by Nobel Laureate John Hopfield should be required reading for aspiring scientists. pni.princeton.edu/document/1136
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Reposted by Jack Humphrey
ALS Advocacy @alsadvocacy.bsky.social · 30/05/2025
EVERY ALS MND scientific conference needs to allow for those with ALS MND who want to attend to be there in person or virtually. It is simply wrong to exclude them.
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Reposted by Jack Humphrey
Molecular Neurodegeneration @molneurodegen.bsky.social · 09/05/2025
'Evidence suggesting that #microglia make #amyloid from neuronally expressed APP: a hypothesis' John Hardy & Patrick Lewis molecularneurodegeneration.biomedcentral.com/articles/10....
molecularneurodegeneration.biomedcentral.com
Evidence suggesting that microglia make amyloid from neuronally expressed APP: a hypothesis - Molecular Neurodegeneration
While APP is largely neuonally expressed, Aβ amyloid is largely produced by microglia as the clearance mechanisms for damaged membranes becomes overwhelmed.
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Reposted by Jack Humphrey
Melissa E. Murray @drneurochic.bsky.social · 11/01/2025
With so many great tau researchers like @leatgrinberg.bsky.social @lucbuee.bsky.social @sjorsscheres.bsky.social @selinawray.bsky.social @karchlab.bsky.social on #SciSky could not help but put together my 1st starterpack⤵️ We are all fighting for you @curemaptftd.bsky.social 💙 go.bsky.app/KHno2VG
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Reposted by Jack Humphrey
ALS Advocacy @alsadvocacy.bsky.social · 31/03/2025
www.heraldscotland.com/news/2504883...
heraldscotland.com
Charity set up by Doddie Weir invests £4m in bid to accelerate MND research
A charity set up by late rugby legend Doddie Weir has committed £4 million to an “open science framework” for research into motor neurone…
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Reposted by Jack Humphrey
Polymenidou Lab @polylab.bsky.social · 28/03/2025
Happy to share our new study that was just published in Neuron! www.cell.com/neuron/fullt...
cell.com
Seeded aggregation of TDP-43 induces its loss of function and reveals early pathological signatures
TDP-43 pathology characterizes neurodegenerative diseases. Scialò et al. use in vitro-generated and patient-derived TDP-43 aggregates as seeds to show that seed-induced TDP-43 cytoplasmic aggregation ...
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Jack Humphrey @jack-humphrey.bsky.social · 17/03/2025
www.biorxiv.org/content/10.1... New work from Humphrey and Raj labs, exploring the role of RNA editing in myeloid cells. Hopefully will be a useful resource for the field. Next stop: genetics!
biorxiv.org
Cytosine-to-uracil RNA editing is upregulated by pro-inflammatory stimulation of myeloid cells
Myeloid cells undergo large changes to their gene expression profile in response to inflammatory stimulation. This includes an increase in post-transcriptional modifications carried out by adenosine-t...
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Jack Humphrey @jack-humphrey.bsky.social · 04/03/2025
Ecstatic to see our paper "Long-read RNA sequencing atlas of human microglia isoforms elucidates disease-associated genetic regulation of splicing" now published in @naturegenet.bsky.social with @trajnp.bsky.social and @panosroussos.bsky.social @sinaibrain.bsky.social www.nature.com/articles/s41...
nature.com
Long-read RNA sequencing atlas of human microglia isoforms elucidates disease-associated genetic regulation of splicing - Nature Genetics
This isoform-centric microglia genomic atlas includes 35,879 novel human microglia isoforms identified by long-read RNA sequencing. A multi-ancestry quantitative trait locus meta-analysis of known and...
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Reposted by Jack Humphrey
Towfique Raj @trajnp.bsky.social · 04/03/2025
Nice to see this finally published! Congratulations @jack-humphrey.bsky.social www.nature.com/articles/s41... (Collaborative work with Panos Roussos and his team! ) Long-read RNA sequencing atlas of human microglia isoforms elucidates disease-associated genetic regulation of splicing
nature.com
Long-read RNA sequencing atlas of human microglia isoforms elucidates disease-associated genetic regulation of splicing - Nature Genetics
This isoform-centric microglia genomic atlas includes 35,879 novel human microglia isoforms identified by long-read RNA sequencing. A multi-ancestry quantitative trait locus meta-analysis of known and...
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Reposted by Jack Humphrey
Nigel Goldenfeld @nigelgoldenfeld.bsky.social · 16/02/2025
This is important! Satellite rallies too! Going sends a message. Not going also sends a message. It's not self-serving for scientists to protest the war on science. Millions of people depend on us. A huge thank you to the early career scientists who are leading this! 🧪 #standupforscience
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Reposted by Jack Humphrey
Kevin Mitchell @wiringthebrain.bsky.social · 11/02/2025
The Genomic Code: the genome instantiates a generative model of the organism www.cell.com/trends/genet... - really delighted to see this in print in @cp-trendsgenetics.bsky.social! 😊
cell.com
The Genomic Code: the genome instantiates a generative model of the organism
How does the genome encode the form of the organism? What is the nature of this genomic code? Inspired by recent work in machine learning and neuroscience, we propose that the genome encodes a generat...
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Reposted by Jack Humphrey
Roxana Daneshjou, MD, PhD @roxanadaneshjou.bsky.social · 23/01/2025
I fear that my crew of junior scientists are going to be absolutely decimated. We did postdocs during the pandemic (I had a 1.5 year old with no childcare!). Somehow, we got through that only to be met with an unprecedented freezing of the NIH.
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Reposted by Jack Humphrey
Jonathan Pritchard @jkpritch.bsky.social · 17/12/2024
If you do GWAS or rare variant association studies, check out this short thread on the concept of SPECIFICITY, and why it is a major determinant of what we find:
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Reposted by Jack Humphrey
Mike Greicius @mikegreicius.bsky.social · 14/12/2024
🧪Thanks to @rbaltman.bsky.social for having me on The Future of Everything podcast to talk about treatments for Alzheimer's disease. Give a listen if you're interested in an (anti)anti-amyloid antibody argument and some promising new drug targets. #Alzheimers engineering.stanford.edu/news/future-...
engineering.stanford.edu
The future of Alzheimer's treatment
A neurologist who studies Alzheimer’s disease says hopes are on the rise for new treatments that target tau proteins.
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Jack Humphrey @jack-humphrey.bsky.social · 14/12/2024
I've had a fantastic week in London meeting old friends and new back at Queen Square #UCL. Thanks to @adrianisaacs.bsky.social and @frattalab.bsky.social for letting me crash their Christmas parties and Johh Hardy for inviting me to give a talk.
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