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German BioImaging

@gerbi-gmb.de
993 followers 42 following 135 posts

Society of core facilities, scientists, students, institutions & companies for microscopy, imageanalysis & datamanagement. 🔬 gerbi-gmb.de

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Johannes Soltwedel @jo-soltwedel.bsky.social · 23/09/2026
🚨New release: NGFF specification 0.6 🚨 Last week, we formally released the latest version of the NGFF specification: 0️⃣.6️⃣( ngff.openmicroscopy.org/specificatio...) Let's take a small tour through the things possible with #ome-zarr 0.6 now that this is out! 👇
ngff.openmicroscopy.org
Version 0.6 — NGFF documentation
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German BioImaging @gerbi-gmb.de · 14/09/2026
GerBI & @mpbioimagingnet.bsky.social: Ask the Experts: 3D Printing in Core Facilities! 📅 Sept 16, 3 PM CEST 📍 Zoom (Link here: t1p.de/a2bum) 💡 Ask Robert, Stefan & Kristin your burning questions - live or via form: t1p.de/7umut #3DPrinting #BioImaging #AskTheExperts #MaxBI #GerBI
lnkd.in
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German BioImaging @gerbi-gmb.de · 10/09/2026
🧬 6th Day of Intravital Microscopy Abstract submission deadline approaching! Share your latest results, methods & ideas 🔬✨ 📢 Registration & Abstract submission: tinyurl.com/4kt8vs23 🌟 Travel Awards for early-career researchers Connect with colleagues across the field! #IntravitalMicroscopy #GerBI
gerbi-gmb.de
6th Day of Intravital Microscopy - German BioImaging
Registration for the 6th Day of Intravital Microscopy is now open! Please follow the link here. This year we are offering several fee waivers for PhD student contributing to the meeting. Please apply ...
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German BioImaging @gerbi-gmb.de · 28/08/2026
"What the heck is…OME-zarr/NGFF" Demystifying bioimaging tech: no jargon, no judgment, just real conversation with @jo-soltwedel.bsky.social on the latest tools & trends. 📅 Sept 3, 1–2:30 PM (Zoom) Register: t1p.de/0byxl | Infos: t1p.de/zkcnd #opensource #ngff #ome #bioimaging
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Global BioImaging @globalbioimaging.bsky.social · 05/08/2026
🌍 Meet some of the outstanding speakers joining us for "Open Access to Imaging Around the Globe"! Our conference brings together imaging scientists from around the world. 📅 The program is now live, and registration is open until September 5.
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German BioImaging @gerbi-gmb.de · 14/08/2026
🌍 Celebrating 10 years of @globalbioimaging.bsky.social! Join the Annual Meeting "Open Access to Imaging around the Globe", Oct 26–29, 2026, hybrid at EMBL Heidelberg + online. Free online participation. #GBI_EoE2026 Register by Sept 5 (in-person): t1p.de/j91jr #BioImaging #OpenAccess #Microscopy
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Global BioImaging @globalbioimaging.bsky.social · 20/07/2026
🌏🔬💫 Don't reinvent the wheel! Good research data management starts before your first dataset. Our next #GBISpotlightOnData episode, "Start early with a (Research Data Management) Plan," shares practical tips for imaging scientists and core facilities on building a living DMP
https://docs.google.com/forms/d/e/1FAIpQLSdMq8lrPmIGf0Djp-RM40VBKwwU8J2SLqS_oX0UcwIqrT-JDA/viewformhttps://docs.google.com/forms/d/e/1FAIpQLSdMq8lrPmIGf0Djp-RM40VBKwwU8J2SLqS_oX0UcwIqrT-JDA/viewform
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Josh Moore @joshmoore.bsky.social · 03/07/2026
Johannes joined @gerbi-gmb.de with a clear first major task: help lead the completion of #NGFF RFC-5. Today, just before heading off on a well-earned holiday and just shy of his one-year anniversary, 0.6 has a release candidate. Kudos, @jo-soltwedel.bsky.social! 🍻🏝️🚀
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German BioImaging @gerbi-gmb.de · 02/07/2026
🚨 Last-minute chance alert! Two spots just opened up for the Core Facility Leadership & Management Course by GerBI&@hfpconsulting.bsky.social: an intense, interactive workshop for core facility leaders. 📅 Aug 24–29, 2026, Düsseldorf Grab your spot now ➡️ t1p.de/o7efv Tag a colleague who’d love this!
gerbi-gmb.de
GerBI-GMB Core Facility Leadership and Management Course 2026 - German BioImaging
Registration has been reopened due to cancellations – please register here. Concept We are pleased to announce the 2026 Core Facility Leadership and Management Course by GerBI-GMB and hfp consulting. ...
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German BioImaging @gerbi-gmb.de · 29/06/2026
🚨 TiM2027 Deadline Extended! More time to submit your workshop! New deadline: July 14, 2026 Don’t miss your chance. 🔗 Apply now #TiM2027 #DeadlineExtended #Microscopy
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Chris Schmidt @schmchris.bsky.social · 16/06/2026
@jo-soltwedel.bsky.social presenting about how important FAIR data management is for efficiently leveraging AI in a trustworthy manner. Small differences in underlying data annotation and metadata can effect AI-based analysis output a lot. #ELMI2026 @gerbi-gmb.de #OME-Zarr
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German BioImaging @gerbi-gmb.de · 17/06/2026
Meet us at our poster this evening #ELMI2026
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Reposted by German BioImaging
Johannes Soltwedel @jo-soltwedel.bsky.social · 16/06/2026
Great interactive talk about surveys/interactive survey about talks and cognitive biases from my colleague @lisa-schaefer.bsky.social from @gerbi-gmb.de at #ELMI2026
Image from a talk at ELMI conference
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Reposted by German BioImaging
Johannes Soltwedel @jo-soltwedel.bsky.social · 16/06/2026
Just gave a talk at #ELMI2026 and a panel discussion about how #FAIR data impacts #AI and its use in #bio-image-analysis 🔬🧪- and what we at @gerbi-gmb.de do about it 👷👷‍♀️ Slides available here: zenodo.org/records/2070...
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German BioImaging @gerbi-gmb.de · 16/06/2026
So excited for #ELMI2026 getting started! First act: The core facility day full of enlightening talks tailored around the world of Core Facilities. We’re happy to having contributed to make this day happen!
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German BioImaging @gerbi-gmb.de · 11/06/2026
Call for Workshops: TiM2027! Expert in microscopy, image analysis, or AI? Propose a workshop for Trends in Microscopy 2027! ✅ Hands-on learning ✅ Access to labs & industry gear ✅ Network with researchers 📅 Deadline: June 30, 2026 🔗 Apply: t1p.de/zxwxx #TiM2027 #Microscopy #BioImaging
t1p.de
Workshops - German BioImaging
Photo credits: Thomas Blank Information for Workshop Providers GerBI-GMB invites proposals for scientific and educational workshops for TiM2027. The workshop submission deadline is June 30, 2026....
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German BioImaging @gerbi-gmb.de · 13/05/2026
What if open science really saves you time and boosts your impact? @globalbioimaging.bsky.social & GerBI's Spotlight on Data reveals how FAIR practices protect your unpublished work while making your research more discoverable and reusable. 👉 Join the series #BioImaging #OpenScience #DataManagement
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Reposted by German BioImaging
Johannes Soltwedel @jo-soltwedel.bsky.social · 28/04/2026
🚨ngff-spec release candidate out🚨 Just out: ngff specification version 0.6.dev4 (github.com/ome/ngff-spe...), which will be the last dev version (!) and mark the beginning of the 🚧spec-phase🚧 (see also forum.image.sc/t/ngff-weekl...) This means: let's develop some implementations 👷‍♀️👷‍♂️ #OME2026 👋
github.com
Release 0.6.dev4 · ome/ngff-spec
What's Changed fix: avoid non-unicode characters (dev) by @jo-mueller in #121 specification: Tie down possible output for coordinate transformation… by @jo-mueller in #109 Improve readability of m...
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 30/04/2026
#OME2026 is coming to an end. It has been a truly welcoming, motivating, and inspiring experience full of intensive exchange and shaped by an exceptionally open and collaborative spirit. Grateful for the many insightful discussions, new connections, and shared ideas. Thank you!
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German BioImaging @gerbi-gmb.de · 05/05/2026
🔍 We are hiring: Remote Research Software Engineer (m/f/d) We are looking for a full-time Remote Research Software Engineer based in Germany who believes that better software can drive real environmental impact. 🌱 Full job ad: jobapplication.hrworks.de?companyId=bp...
jobapplication.hrworks.de
Remote Software Engineer (m/f/d) - Job Konstanz, Home office - GerBI Job portal
Develop and deploy solutions that reduce redundant data storage , including deferred data access, external linking strategies, and efficient use of heterogeneous storage classes. Integrate and...
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 29/04/2026
What a delight to listen to Carole Goble's inspiring keynote at #OME2026 on community building, charismatic leadership, and endurance! A powerful reminder that lasting infrastructures are shaped not only by technology, but especially by the social experience: leveraging trust, thrust & transparency.
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 29/04/2026
Matthew Hartley from EMBL-EBI, UK, demonstrating live at #OME2026 the power of recent updates around the BioImage Archive @bioimagearchive.bsky.social: Seamless image browsing enabled by OME-Zarr, and enhanced data search functionality are boosting the FAIRness of bioimage data significantly. 👏
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 29/04/2026
#OME2026 day 2 opens with Shuichi Onami from RIKEN, Kobe, Japan, speaking about SSBD, an infrastructure for sharing biological dynamics data. SSBD combines repository functionality based on minimum required metadata with an added-value database containing richly curated datasets for optimal reuse.
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 29/04/2026
Katy Wolstencroft from Amsterdam UMC, who has co-developed the original #FAIR principles, speaking at #OME2026 about national strategy in the Netherlands to make (image) data FAIR, building, among others, on OMERO and BIOMERO to enable research data infrastructure ecosystems at scale.
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 28/04/2026
Kiya Govek from The Jackson Laboratory gave the inspiring opening lecture at the #OME2026 meeting, bringing us the community contributor perspective based on her online community survey. Next up: An Update from the OME Ecosystem
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 28/04/2026
It's on! #OME2026 kicking off at Haus der Universität in Düsseldorf! @sweidtkamp.bsky.social opened this exciting community event, looking ahead at three days of exchange to shape bioimage data management as an international collaborative endeavor.
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 28/04/2026
Prof. Martin Heil, Dean of the Faculty of Mathematics and Natural Sciences at @hhu.de, welcomes the #OME2026 community with warms words at this historic venue - the Haus der Universität. Welcome to Düsseldorf to all community members and supporters. 👏
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 28/04/2026
A significant moment at #OME2026: Thanking Prof. Jason Swedlow, the founder of OME, who shaped this remarkable community work since the beginning of the millenium. His work & leadership were honored - even with a nod to his famous blue shirts by OME's Interim Board, nominated by Jason in Oct '25.
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German BioImaging @gerbi-gmb.de · 28/04/2026
The 19th OME Meeting just kicked off in Düsseldorf! So happy to welcome this wonderful community to @hhu.de together with @nfdi4bioimage.bsky.social and the @openmicroscopy.org Team — really looking forward to the days ahead. 😊 Join online: gerbi-gmb.de/event/ome-20... #OME2026 #NFDI4BIOIMAGE #OME
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Stefan Terjung @stefanterjung.bsky.social · 08/04/2026
Looking for a course on STED? You still have time to apply by 17 April 🔬⏰ @gerbi-gmb.de @eurobioimaging.bsky.social @eulimi.bsky.social @globalbioimaging.bsky.social @france-bioimaging.bsky.social @bioimaginguk.bsky.social @danishbioimaging.bsky.social @bioimagingna.bsky.social
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German BioImaging @gerbi-gmb.de · 09/04/2026
A great reminder that the #FAIR principles only truly make sense when all aspects align! Check out this spot-on visualization by @tom-bssnnt.bsky.social
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German BioImaging @gerbi-gmb.de · 19/03/2026
📢 Bioimaging folks, your input matters! The NFDI4BIOIMAGE Research Data Management Survey 2026 is live. Help shape future tools, services & training. ⏱️ ~20 min | 🔒 anonymous | 🌍 open to all 👉 nfdi4bioimage.de/en/community... 🗓️ Deadline: April 30, 2026 Please share! 🧬
nfdi4bioimage.de
Community survey 2026 - NFDI4BIOIMAGE
Community Survey 2026
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German BioImaging @gerbi-gmb.de · 17/03/2026
#GerBIMeeting2026 kicking off day 2 in Fulda with inspirations from collaborating scientific communities, represented by Claudia Giesecke-Thiel (DGfZ), Johannes Jägers (Young Physiologists), and Yara Reis (GBI). Chaired by Hella Hartmann (GerBI). Next Up: Industry Spotlight
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German BioImaging @gerbi-gmb.de · 16/03/2026
"GerBI ist open, creative, inspiring, playful, yet always professional" - Bettina Weigelin at the #GerBIMeeting2026, highlighting a great GerBI community feeling.
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German BioImaging @gerbi-gmb.de · 16/03/2026
Starting today! We are looking forward to welcoming the Community at Kloster Frauenberg in Fulda for the 2026 GerBI-GMB Community Meeting. #GerBIMeeting2026
A picture of a table with the GerBI Community Meeting Flyer, some socks, and stickers next to a microphone.
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German BioImaging @gerbi-gmb.de · 23/02/2026
🚀 The GerBI-GMB Community Meeting is fully booked onsite! This biennial gathering brings together imaging scientists from academia & industry. Open for members and non-members! More here: t1p.de/kcj7x 💻 Online-attendance registration still open — most sessions streamed live! 🔗 t1p.de/cj9fs
t1p.de
GerBI Annual Community Meeting 2026 - German BioImaging
General Information The GerBI-GMB Community Meeting is held every other year alternating with Trends in Microscopy and is the come-together of GerBI-GMB members and interested imaging scientists from ...
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German BioImaging @gerbi-gmb.de · 22/01/2026
19th #OME Community Meeting, Düsseldorf · 28–30 April 2026 Registration is now open! Join researchers, developers, and imaging facility staff to connect, share experiences, and discuss the future of OME tools. Details & registration (deadline: 31 March 2026): gerbi-gmb.de/event/ome-20...
gerbi-gmb.de
19th OME Community Meeting - German BioImaging
Join us for the 19th Open Microscopy Environment (OME) Community Meeting from 28.-30.4.2026, in the Haus der Universität Düsseldorf. Invited Speakers Carole Goble – Keynote – Jean-Marie Burel Josh Moo...
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German BioImaging @gerbi-gmb.de · 22/01/2026
Great news for German #BioImaging! 🤝 #GerBI & #de.NBI just signed an MoU to launch a GerBI #OMERO platform. de.NBI brings the cloud, GerBI handles ops, support & community. 🧩 A testbed + training hub for everyone. Stronger data, stronger science. More soon!
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ppbioimaging.bsky.social @ppbioimaging.bsky.social · 03/11/2025
🎉 ELMI 2026 registration is OPEN! Join us in Coimbra 🇵🇹 June 16–19 for Europe’s premier microscopy event. 🔬 Cutting-edge talks 🧪 Hands-on workshops 🤝 Meet top researchers & vendors Secure your spot now! 🔗https://shorturl.at/IkyxX Post sponsored by @okolab.bsky.social
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German BioImaging @gerbi-gmb.de · 12/11/2025
OME-NGFF Hackathon in Zürich just started! We're organizing ourselves to dig into various topics during the next few days. Let's shape the future of microscopy image data standards together. #OME-NGFF_Hackathon #GerBI
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Max Planck BioImaging Core Unit Network @mpbioimagingnet.bsky.social · 29/10/2025
💬 We’re excited to announce, together with @gerbi-gmb.de, another Ask the Experts session! 🎉 Next week, on Nov 5 from 3–5 pm CET, we’ll discuss Spatial Transcriptomics with our invited experts: Jan-Philipp Mallm, Sheida Hadji Rasouliha and Marina Peralta! If you are interested to join, reach out!
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 27/10/2025
Another #RDM4mic meeting, which focused on research data management for microscopy, took place @uni-muenster.de. 💫 Several NFDI4BIOIMAGE task area leaders and data stewards met on site and contributed to the program. Susanne Kunis' presentation is already available: doi.org/10.5281/zeno...
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German BioImaging @gerbi-gmb.de · 22/10/2025
🔬 Join us in Leipzig! The #YMIA panel discussion "The Power of Sharing: Open Data in Bio-image Analysis" is happening in person at UFZ Leipzig on Friday! Organized by the Young Microscopists & Image Analysts (YMIA) Team, part of the GerBI community. #BioImageAnalysis #Microscopy #OpenData
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 14/10/2025
🔬We are looking forward to the #RDM4mic meeting that will take place from October 21-23 at the University of Münster. It is co-organized by @nfdi4bioimage.bsky.social and @gerbi-gmb.de and aims to bring together members of the imaging and #RDM community. Read more: 👉 hackmd.io/@marietoveli...
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German BioImaging @gerbi-gmb.de · 18/09/2025
First day of our 5th Day of Intravital Microscopy conference has started! Organised by our Team Intravital Microscopy and the working group of the @wsic.bsky.social and iFIT Cluster of Excellence. Already had amazing talks and are looking forward to many more ✨ #IvMic2025
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de.NBI & ELIXIR Germany @denbi.bsky.social · 03/09/2025
🚀 Registration is open for BioHackathon Germany 2025! Join us 1–5 Dec in Walsrode for hands-on projects, networking, and innovation in #bioinformatics. 🧬🤝 🏨 Anders Hotel Walsrode | 🍽️ Social events | ✈️ Easy travel 🔗 Seats limited—register now! www.denbi.de/de-nbi-event... #Hackathon
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Joel Lüthi @joelluethi.bsky.social · 25/08/2025
We're happy to announce the 2025 International OME-NGFF workshop 🎉 📅 Dates: - Symposium: Nov 10–11, 2025 - Hackathon: Nov 12–14, 2025 📍 Location: Zurich, Switzerland Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...  #bioimaging #openscience #OMENGFF #OMEZarr (1/x 🧵)
Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland
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foundingGIDE @gideproject.bsky.social · 27/08/2025
📢 Deadline Extended! We’re excited to announce that the registration deadline for in-person attendance at the #foundingGIDE Community Event has been extended. 🗓️ New deadline: 30 September 2025 (previously 31 August 2025)
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German BioImaging @gerbi-gmb.de · 01/09/2025
⏰ Reminder: The early bird registration and abstract submission for our 5th Day of Intravital Microscopy close on September 5! Don’t miss your chance to join us in Tübingen on 18–19 Sept. Secure your spot today! 👉 bit.ly/3IOlJtJ
bit.ly
5th Day of Intravital Microscopy - German BioImaging
Intravital microscopy (IVM) enables the observation and precise quantification of cellular processes within native tissue microenvironments, with resolutions unmatched by other techniques. This powerf...
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German BioImaging @gerbi-gmb.de · 29/08/2025
Check out the detailed program for the 5th Day of Intravital Microscopy (18–19 Sept, Tübingen)! Our keynote: @matthiakarreman.bsky.social‬: "Imaging cancer networks in brain metastases in vivo." Full details 👉 bit.ly/3IOlJtJ #IVMIC25
bit.ly
5th Day of Intravital Microscopy - German BioImaging
Intravital microscopy (IVM) enables the observation and precise quantification of cellular processes within native tissue microenvironments, with resolutions unmatched by other techniques. This powerf...
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