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Eric Paquet

@ericrpaquet.bsky.social
104 followers 169 following 30 posts

Assistant professor in genomic and big data, Animal Science department, Laval University, Canada. Opinions are my own. il/lui he/him paquetlab.fsaa.ulaval.ca

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Eric Paquet @ericrpaquet.bsky.social · 25/09/2026
🚨 New publication! Can automatic milk feeder data detect early signs of Bovine Respiratory Disease in dairy calves? Across 5 farms, BRD-related drinking behavior varied by farm, suggesting one-size-fits-all models may not work. 📄 doi.org/10.1017/S002...
doi.org
Evaluation of automated milk feeders for early detection of respiratory disease complex in dairy calves on five commercial farms | Journal of Dairy Research | Cambridge Core
Evaluation of automated milk feeders for early detection of respiratory disease complex in dairy calves on five commercial farms
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Eric Paquet @ericrpaquet.bsky.social · 28/08/2026
Important results here for MIR-based DMI,NUE,CH4 prediction: "highlighting the need for caution when models are used on data from different farms and time periods." www.journalofdairyscience.org/article/S002...
journalofdairyscience.org
Biological validation of milk mid-infrared-predicted dry matter intake, nitrogen use efficiency, and methane production across lactation in individual dairy cows
Dry matter intake (DMI), nitrogen use efficiency (NUE) for milk production, and methane (CH4) production are key sustainability traits in dairy cows. Milk mid-infrared (MIR) spectroscopy offers a scal...
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Eric Paquet @ericrpaquet.bsky.social · 24/08/2026
New preprint: 8 independent clustering pipelines on 400K+ milk MIR spectra from 291K dairy cows (3,408 Québec farms) converge on the same 5 meta-clusters, tracing a clear negative energy balance (NEB) severity gradient in early lactation. arxiv.org/abs/2608.20653
arxiv.org
Meta-clustering of milk mid-infrared spectra identifies dairy cow groups associated with negative energy balance in early lactation
Clustering methods have been used to identify distinct groups of milk samples, cows, or herds. Fourier-transform infrared (FTIR) spectroscopy, particularly mid-infrared (MIR) spectroscopy, has been ap...
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Eric Paquet @ericrpaquet.bsky.social · 27/07/2026
We're Hiring! 🔬 M.Sc./Ph.D. & undergrad positions in computer vision for animal production. 📅 Grad: Jan/May 2027 📅 Undergrad: Fall 2026 Info: l1nk.dev/dt1o2ga Qs: eric.paquet@fsaa.ulaval.ca
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Eric Paquet @ericrpaquet.bsky.social · 03/06/2026
Another review, another rejection—basic ML mistakes again. Data leakage (using the test set to tune hyperparameters… wtf). Even with CS coauthors, it keeps happening. How many papers slip through? Read these: www.sciencedirect.com/science/arti... www.sciencedirect.com/science/arti...
sciencedirect.com
Leakage and the reproducibility crisis in machine-learning-based science
Machine-learning (ML) methods have gained prominence in the quantitative sciences. However, there are many known methodological pitfalls, including da…
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Eric Paquet @ericrpaquet.bsky.social · 03/04/2026
New paper out! How do #farms and samples/farm affect FTIR models? • Performance plateaus • 4 predictability classes • First derivative ≈ no impact • Informative wavenumbers = key • >10 farms needed • ~200 (easy) vs ~800 (hard) samples tinyurl.com/59zb96tw
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Eric Paquet @ericrpaquet.bsky.social · 26/03/2026
How many perfect papers have been ruined by a journal’s awful proof-validation web interface, and why is the final step of publication still so bad?
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Michael Antle PhD 🇨🇦 @drmikeantle.bsky.social · 19/03/2026
Interested in the effects of the time change in our bodies and brain? Participate in a Canadian study here. www.facebook.com/share/p/18Nc...
facebook.com
Redirecting...
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Merriam-Webster @merriam-webster.com · 22/02/2026
Great game, Canada! It was an honor/honour to play against such fantastic neighbors/ neighbours.
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Eric Paquet @ericrpaquet.bsky.social · 11/02/2026
State of the art research being done in the lab right now :
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Le Bulletin des agriculteurs @lebulletinagr.bsky.social · 09/02/2026
BŒUF 🐂 Les impacts environnementaux, au-delà des GES La décision de Polytechnique de retirer la viande bovine de ses menus ne tient pas compte de plusieurs facteurs environnementaux. Entrevue avec un chercheur de l'Université Laval 👇 vist.ly/4qxr7
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Institut intelligence et données (IID) - Université Laval @iid-ulaval.bsky.social · 05/02/2026
Prochain webinaire IID ➡️Comment faire un grand modèle de langue québécois? 📌Le 27 février de 12h à 13h, en formule comodale : dîner-pizza sur le campus UL 🍕, ou en ligne sur Zoom. Détails et inscription : ow.ly/he1a50Y87PI
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Eric Topol @erictopol.bsky.social · 02/02/2026
The time of day for cancer immunotherapy is associated with major outcomes. Early is better. Results from a randomized trial of lung cancer, backs up the importance of our circadian rhythm and immune system www.nature.com/articles/s41...
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Université Laval @ulaval.ca · 21/01/2026
Cinq nouvelles chaires de recherche pour renforcer l’expertise #agroalimentaire à l’Université Laval Sébastien Fournel - Eric Paquet
nouvelles.ulaval.ca
Cinq nouvelles chaires de recherche pour renforcer l’expertise agroalimentaire à l’Université Laval
La Faculté des sciences de l'agriculture et de l'alimentation a annoncé la création de ces chaires, qui ont été rendues possibles grâce à un financement du ministère de l'Agriculture, des Pêcheries et de l'Alimentation du Québec
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Eric Paquet @ericrpaquet.bsky.social · 16/01/2026
Reading ML papers more closely, I’m struck by how often data leakage slips through peer review. Perhaps it’s time for journals to appoint machine-learning editors, much like statistical editors, to help ensure reported performance truly reflects model generalization.
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Eric Paquet @ericrpaquet.bsky.social · 13/11/2025
Prof can be late for many things, but being late for a thesis evaluation—especially for an international student—is one of the worst. Their timelines are tight, their visas depend on it, and delays can mean real extra costs.
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Eric Paquet @ericrpaquet.bsky.social · 22/09/2025
New paper out ! An open-source lightweight ear-tag mounted sensor for #ML-based real-time monitoring of #dairy #calf activity : www.sciencedirect.com/science/arti...
sciencedirect.com
An open-source lightweight ear-tag mounted sensor for ML-based real-time monitoring of dairy calf activity
Monitoring the activities of individual dairy calves is crucial for assessing their welfare and detecting early signs of disease. However, traditional…
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Génome Québec @genomequebec.bsky.social · 28/07/2025
A great spotlight on Génome Québec in Le Journal de Montréal! Since 2019, students have been exploring Québec’s lake biodiversity through environmental DNA. Science, education, and action—all in one project. 🧬🌊🐟 🔗 cutt.cx/5hCz . #eDNA #Genomics #CommunityScience
cutt.cx
Des poissons rouges dans nos lacs: des élèves révèlent les secrets de nos cours d’eau grâce à l’ADN
En collectant de simples échantillons d’eau, des jeunes aident les chercheurs à dresser un portrait plus précis de la biodiversité des lacs du Québec.
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Eric Paquet @ericrpaquet.bsky.social · 16/07/2025
Interesting application of computer vision in livestock: detecting digital dermatitis using a camera positioned in the footbath! www.sciencedirect.com/science/arti...
sciencedirect.com
A novel system for automated continuous on-farm assessment of digital dermatitis using artificial intelligence
Digital dermatitis (DD) is a major cause of lameness in cattle, significantly affecting animal well-being and reducing productivity across the dairy i…
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Cote lab-The KAT in the HAT @lab-hat.bsky.social · 04/07/2025
come join us in our brand new research building! www.crc.ulaval.ca/wp-content/u...
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Eric Paquet @ericrpaquet.bsky.social · 10/06/2025
New paper led by Tesnime Touil: Can we predict SARA in cows from milk? Tested 36 ML models on FTIR spectra from 107 cows. ✔️ SARA predicted with up to 69% accuracy ❌ Reticuloruminal pH not reliably predictable Read more: journalofdairyscience.org/article/S002... #DairyScience #ML #FTIR
journalofdairyscience.org
Predicting reticuloruminal pH and subacute ruminal acidosis of individual cows using machine learning and Fourier transform infrared spectroscopy milk analysis
Low reticuloruminal pH (rpH) for a prolonged period could lead to SARA. This disease negatively affects cow health and is associated with monetary losses for the dairy industry. The aim of this study ...
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IVADO @ivado.bsky.social · 26/05/2025
🔷 IA + données omiques : un duo qui accélère la recherche contre le cancer grâce au soutien d'IVADO, @genomequebec.bsky.social, l'Oncopole et au Fonds Apogée Canada. 🔗 Dossier complet réalisé avec CScience → lesconnecteurs.ca/dossier-canc... #IA #cancer #génomique #innovation
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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 13/05/2025
"Women are PIs on 58% of the canceled grants, although they are PIs on only 34% of all active NSF grants. Similarly, Blacks are PIs on 17% of the terminated grants, although they make only 4% of the total pool. Hispanic PIs and those with disabilities were twice as likely to lose a grant."
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Eric Paquet @ericrpaquet.bsky.social · 06/05/2025
Good old stuff and exactly what I was looking for. Cell cycle 3T3 www.pnas.org/doi/pdf/10.1...
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Thanh Neville, MD, MSHS @thanh-neville.bsky.social · 25/04/2025
Lol, Elon has encouraged the development of the TRANS car: born a Tesla, but identifies as something else.
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Randall Munroe @xkcd.com · 25/04/2025
PhD Timeline xkcd.com/3081
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Nature Portfolio @natureportfolio.nature.com · 22/04/2025
A paper in Nature Communications maps air pollution from power plants supplying electricity to US Bitcoin mines and finds that 1.9 million people in 2022-23 breathed toxic amounts of Bitcoin mine attributable pollution, particularly around New York City and Houston. 🧪
go.nature.com
The environmental burden of the United States’ bitcoin mining boom - Nature Communications
The paper maps air pollution from power plants supplying electricity to US Bitcoin mines. It finds that 1.9 million people in 2022-2023 breathed toxic amounts of Bitcoin mine attributable pollution, particularly around New York City and Houston.
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Patrick MacDonald🇨🇦 @bcellorg.bsky.social · 19/04/2025
“Recruiting U.S. scientists is a fine idea – except we’re barely supporting Canadian scientists as it is” www.theglobeandmail.com/gift/aaa9fe…
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Eric Paquet @ericrpaquet.bsky.social · 18/04/2025
Use of a priority lane to increase voluntary visits to a milking robot in dairy cows www.journalofdairyscience.org/article/S002...
journalofdairyscience.org
Use of a priority lane to increase voluntary visits to a milking robot in dairy cows
Voluntary visits to the milking robot are the basis of automatic milking system functionality. Therefore, problems arise when cows are undermotivated to visit the robot. Cows with reduced competitive ...
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Eric Paquet @ericrpaquet.bsky.social · 17/04/2025
Really need to read this : Mapping the landscape of social behavior www.cell.com/cell/fulltex...
cell.com
Mapping the landscape of social behavior
Computer vision and machine learning approaches map a multi-scale social behavioral landscape, revealing ASD signatures and establishing an atlas of rodent sociality.
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Eric Paquet @ericrpaquet.bsky.social · 16/04/2025
Rejoignez-nous pour une après-midi passionnante le 25 mai autour des rythmes biologiques et de leurs impacts sur notre santé et notre quotidien. researchsleep.ca/workshops-webinars
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Eric Paquet @ericrpaquet.bsky.social · 11/04/2025
Impressive work : Leveraging computer vision, large language models, and multimodal machine learning for optimal decision-making in dairy farming www.journalofdairyscience.org/article/S002...
journalofdairyscience.org
Leveraging computer vision, large language models, and multimodal machine learning for optimal decision-making in dairy farming
This article explores various applications of artificial intelligence technologies in dairy farming, including the use of computer vision systems (CVS) for animal identification, body condition score ...
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Eric Paquet @ericrpaquet.bsky.social · 10/04/2025
Water use dynamics with conventional and automated milking systems on a dairy farm "With AMS the farm used significantly more water, produced significantly more milk, and achieved significantly better water use efficiency per L of milk." www.journalofdairyscience.org/article/S002...
journalofdairyscience.org
Water use dynamics with conventional and automated milking systems on a dairy farm
An increasing proportion of dairy farms are adopting automated milking systems (AMS). At the same time, the dairy industry is actively exploring strategies to reduce the water footprint of milk produc...
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Eric Paquet @ericrpaquet.bsky.social · 10/04/2025
New publication in Canadian Journal of Animal Science! We explore the economics of raising Holstein heifers in Québec & how farm-level factors impact costs. shorturl.at/oNCbv Kudos to Léonie Laflamme-Michaud & co-authors, and thanks to Lactanet & Les PLQ for their support!
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Randall Munroe @xkcd.com · 08/04/2025
Tariffs xkcd.com/3073
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Eric Paquet @ericrpaquet.bsky.social · 02/04/2025
Reviewers want 'more contemporary literature' to support cross-validation. Since when are good old classic papers—cited thousands of times—not enough? What ‘contemporary’ sources do you need for a method studied since the 1970s?
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Justin Weinberg @dailynous.com · 26/03/2025
"I want to raise my kids in a country that is not tilting towards a fascist dictatorship." Philosopher Jason Stanley is leaving Yale and taking up a position at the University of Toronto's Munk School of Global Affairs and Public Policy.
dailynous.com
Stanley from Yale to Toronto - Daily Nous
Jason Stanley, currently professor of philosophy at Yale University, will be moving to the Munk School of Global Affairs and Public Policy at the University of Toronto. Professor Stanley is well known...
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Eric Paquet @ericrpaquet.bsky.social · 19/03/2025
Still time to register for the 2025 Conference on Chronobiology: From the Cell to Medicine and Society! Montreal | May 25-27, 2025 Join leading experts to explore the latest in circadian research. Don’t miss out! Register now: event.fourwaves.com/scc-csc-2025... #Chronobiology #CircadianScience
event.fourwaves.com
2025 Conference Chronobiology: from the Cell to Medicine and Society
Fourwaves - 2025 Conference Chronobiology: from the Cell to Medicine and Society
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Eric Paquet @ericrpaquet.bsky.social · 14/03/2025
4 reviewers is a lot of reviewers.
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Christopher Hogue Ph.D. @cwvhogue.bsky.social · 20/02/2025
Ron Beavis 🇨🇦 has had enough. #science #massspec #proteomics
Screenshot of Canadian Mass Spectrometry resource thegpm.org blocks US IP addresses citing trade war in progress.
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Eric Paquet @ericrpaquet.bsky.social · 18/02/2025
An unexpected but highly useful application of ChatGPT: Helping me tone down my aggressive responses to reviewers in rebuttals.
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Eric Paquet @ericrpaquet.bsky.social · 14/02/2025
It never ceases to amaze me how researchers are still making breakthroughs with AIMS, a method we published 10 years ago with @hallettmiket.bsky.social . Now, AIMS is proving instrumental in revealing BC subtype switching before and after neoadjuvant treatment. tinyurl.com/bdday25t
tinyurl.com
Dynamics of molecular heterogeneity in high-risk luminal breast cancer—From intrinsic to adaptive subtyping
Denkert et al. evaluate adaptation of luminal high-risk breast cancer to neoadjuvant therapy in longitudinal biopsies from Penelope-B trial and identify five adaptive subtypes (AC1-5) by comparing pre...
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Eric Paquet @ericrpaquet.bsky.social · 03/02/2025
Due to the current political climate, our lab will not be attending #ADSA2025 in Louisville, Kentucky this year.
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Alejandro Montenegro @aemonten.bsky.social · 28/01/2025
Article in PNAS, 2013 t.co/N9vYvFGbXO
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Claus Wilke @clauswilke.com · 17/12/2024
Bioart, courtesy of the NIH. All images are in the public domain and available for download as high-quality SVGs. bioart.niaid.nih.gov
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Eric Paquet @ericrpaquet.bsky.social · 12/12/2024
Register now for next year's Canadian Conference on Chronobiology: From the Cell to Medicine and Society. The conference will take place in Montreal from May 25 to 27, 2025. Learn more and sign up here: event.fourwaves.com/scc-csc-2025...
event.fourwaves.com
2025 Conference Chronobiology: from the Cell to Medicine and Society
Fourwaves - 2025 Conference Chronobiology: from the Cell to Medicine and Society
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