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Endika Haro

@eharo84.bsky.social
114 followers 394 following 4 posts

Enhancer biology at Rada-Iglesias lab

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Reposted by Endika Haro
María Mariner @mariamafau.bsky.social · 19/05/2026
🚨Happy to share a new PreLight covering the latest #preprint by the Meissner lab (@molgen.mpg.de) on acute SUZ12 degradation during TLS formation. A work brilliantly executed by @dannimklee.bsky.social et al. Get to know more about him and his work here ⤵️ prelights.biologists.com/highlights/t...
prelights.biologists.com
Temporal degradation of PRC2 uncovers specific developmental dependencies - preLights
Pairing acute SUZ12 degradation + simplified embryoids, Ming-Kang Lee et al. pinpoint time-dependent sensitivities to PRC2 loss. A meticulous experimental approach applicable to the functional stage-s...
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Juliet Turner @juliet-turner.bsky.social · 18/12/2025
Very happy to share that I just published a new paper from my thesis! 🎉 We analysed 546 species of ant to understand how extreme specialisation into reproductive and non-reproductive roles evolved.  Key discoveries in thread🧵 👇 Full paper here: academic.oup.com/evolut/advan...
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Rob Klose @robklose.bsky.social · 11/12/2025
An early Christmas present for those interested in chromatin and transcription! Fantastic work from @au-ho-yu.bsky.social and @aleksszczurek.bsky.social . Thanks to Inge and Michiel for their help. Please repost! www.biorxiv.org/content/10.6...
biorxiv.org
SET1/MLL complexes control transcription independently of H3K4me3
Histone H3 lysine 4 trimethylation (H3K4me3) at gene promoters is thought to play a central role in gene transcription. H3K4 methylation is deposited by the SET1 (A/B) and MLL (1-4) multi-protein comp...
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Hannah Long @hannahlong.bsky.social · 10/11/2025
📣 Paper alert! I am delighted that our paper exploring the impact of Neanderthal-derived variants on the activity of a disease-associated craniofacial enhancer has been published in Development today! journals.biologists.com/dev/article/...
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Christa Buecker @chribue.bsky.social · 21/11/2025
We are excited to participate this year again in the VBC summer school! If you want to work with me and my amazing student Maria, apply!
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Reposted by Endika Haro
Joaquina Delas @joadelas.bsky.social · 18/11/2025
It's always special when you find your own paper in the table of contents of the journal 😍 "The cis-regulatory logic integrating spatial and temporal patterning in the vertebrate neural tube" -> Now out in its final form www.cell.com/developmenta...
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Reposted by Endika Haro
James Briscoe @jamesbriscoe.bsky.social · 18/11/2025
Good to see the peer reviewed version of this in print The cis-regulatory logic integrating spatial and temporal patterning in the vertebrate neural tube A global temporal chromatin program operates across the vertebrate nervous system to control neural cell diversity www.cell.com/developmenta...
cell.com
The cis-regulatory logic integrating spatial and temporal patterning in the vertebrate neural tube
Zhang et al. identify a global temporal chromatin program that operates across the developing vertebrate nervous system to control neural cell diversity. This mechanism, which involves Nr6a1 and NFIA/...
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Reposted by Endika Haro
María Mariner @mariamafau.bsky.social · 15/11/2025
🚨Reposts appreciated‼️If I had read this PhD offer five years ago, I wouldn’t have hesitated for a second to apply 😉 Passionate about gene regulation, chromatin, and developmental biology? Just contact @radaiglesiaslab.bsky.social at @ibbtec.bsky.social 🧬✨ #PhD #3DGenome
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Endika Haro @eharo84.bsky.social · 17/11/2025
Interested in gene regulation during development? Don’t miss the opportunity!
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Reposted by Endika Haro
Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 06/11/2025
We recently reported that promoter competition can contribute to the robust insulation of gene regulatory domains (www.nature.com/articles/s41...). We now offer a 4-years PhD contract to investigate whether the dirsuption of this regulatory mechanism can lead to congenital defects. More details 👇
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 13/08/2025
#Preprint alert! 📣 We are thrilled to share the work led by Lara Zorro-Shahidian and Lucio di Filippo, in which we show that #MLL2 controls gene expression in both #ESC and upon #differentiation by facilitating the #enhancer like activity of #LINE1 elements www.biorxiv.org/cgi/content/...
biorxiv.org
MLL2 facilitates long-range gene regulation through LINE1 elements
Transcriptional regulation is tightly linked to chromatin organization, with H3K4me3 commonly marking both active and bivalent promoters. In embryonic stem cells (ESC), MLL2 is essential for H3K4me3 d...
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 11/08/2025
This work would not have been possible without the support of @ibbtec.bsky.social @csic.es @erc.europa.eu @ageinves.bsky.social @ec.europa.eu
c.es
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María Mariner @mariamafau.bsky.social · 24/07/2025
📕Read the full preprint here: www.biorxiv.org/content/10.1... Special thanks to my great PI and to the @radaiglesiaslab.bsky.social members at IBBTEC, specially to @sanchezgaya.bsky.social, whose work on the bioinformatics part of the project has been truly instrumental 💻📊📉⚡
biorxiv.org
Dual role of ZIC2 during neural induction: from pioneer transcription factor to enhancer activator
ZIC2, a member of the Zinc Finger of the Cerebellum family of transcription factors (TFs), plays crucial roles during neural development. In humans, defects in ZIC2 cause holoprosencephaly, a congenit...
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Reposted by Endika Haro
Daniel Ibrahim @danielibrahim.bsky.social · 27/05/2025
How to find Evolutionary Conserved Enhancers in 2025? 🐣-🐭 Check out our paper - fresh off the press!!! We find widespread functional conservation of enhancers in absence of sequence homology Including: a bioinformatic tool to map sequence-diverged enhancers! rdcu.be/enVDN github.com/tobiaszehnde...
rdcu.be
Conservation of regulatory elements with highly diverged sequences across large evolutionary distances
Nature Genetics - Combining functional genomic data from mouse and chicken with a synteny-based strategy identifies positionally conserved cis-regulatory elements in the absence of direct sequence...
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María Mariner @mariamafau.bsky.social · 15/05/2025
#EMBLChromatin keeps being awesome: fantastic talks, lots of networking and troubleshooting! But guess who is also multitasking? ZIC2! Particularly during neural induction! Come by this afternoon to check poster 158 and I’ll tell you all about it 😉 @radaiglesiaslab.bsky.social
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Rafeeque Mavoor @rafeequemavoor.bsky.social · 13/05/2025
🧵5 Top Free Alternatives to BioRender for Scientific Illustrations! These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs. Save and share the post!
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Marieke Oudelaar @mariekeoudelaar.bsky.social · 13/05/2025
Very happy to share the peer-reviewed version of our paper in which we study the formation and function of pair-wise and multi-way enhancer-promoter interactions in gene regulation (see thread below): www.nature.com/articles/s41...
nature.com
CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation - Nature Structural & Molecular Biology
Karpinska, Zhu and colleagues characterize the structure-function relationship of the genome during cellular differentiation and demonstrate a role for enhancer-promoter interactions in gene regulatio...
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 03/05/2025
Really proud of Michaela Bartusel, who initiated this work while being a PhD in our lab. Michaela never gave up and, together with the great guidance of my friend and former colleague Eliezer Calo, made some very interesting findings regarding the genetic basis of orofacial clefting.
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Reposted by Endika Haro
Shady Saad @shadys11.bsky.social · 21/04/2025
I am incredibly proud to share that my work has officially been published in Cell! @cp-cell.bsky.social This work was a product of years of dedication and countless hours of research in the labs of Joanna Wysocka and Dan Jarosz labs @stanfordmedicine.bsky.social www.cell.com/cell/fulltex...
cell.com
DNA binding and mitotic phosphorylation protect polyglutamine proteins from assembly formation
DNA binding and phosphorylation protect FOXP2, a transcription factor with the longest polyQ track in the proteome, from aggregation during interphase and mitosis. Harnessing these native solubility-p...
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Genome Research @genomeresearch.bsky.social · 14/04/2025
Part 1 and 2 of the Long-read sequencing Special Issues are now live! tinyurl.com/Genome-Res-LRS
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Teif lab @teiflab.bsky.social · 23/03/2025
Do et al., 2025. Binding domain mutations provide insight into CTCF’s relationship with chromatin and its contribution to gene regulation www.cell.com/cell-genomic...
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Jake Cornwall-Scoones @jcornwallscoones.bsky.social · 10/03/2025
Excited to share my latest work with @joadelas.bsky.social and @jamesbriscoe.bsky.social Predictable Engineering of Signal-Dependent Cis-Regulatory Elements www.biorxiv.org/content/10.1... 1/11
biorxiv.org
Predictable Engineering of Signal-Dependent Cis-Regulatory Elements
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 03/03/2025
Do you have an exciting story about #enhancers or #enhanceropathies?. Then submit your abstract to the @embo.org workshop on "Enhancer mechanics and Enhanceropathies" in Denmark before is too late: the deadline for abstract submissions is in two weeks (March 17th)! meetings.embo.org/event/25-enh...
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 31/01/2025
Together with @smandrup.bsky.social and Minna Kaikkonen we are happy to announce the 3rd Edition of the EMBO Workshop on #Enhancers and #Enhanceropathies. This time we will meet during the beautiful Danish summer (June 16-21). Book the dates and register soon!!! meetings.embo.org/event/25-enh...
meetings.embo.org
Enhancer Mechanics and Enhanceropathies
Join us for the highly anticipated third EMBO workshop on Enhancer Mechanics and Enhanceropathies! Building on the success of our previous meetings in Santander (2021) and Marseilles (2023), this eve…
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Angela Levine @angelahlevine.bsky.social · 24/01/2025
The administration took down the reproductive rights website that women need access to. So The Skimm bought a url and brought the content back. Pass this on! Go to reproductiverightsdotgov.com
reproductiverightsdotgov.com
ReproductiveRights.Gov Vanished, So We Brought It Back
theSkimm makes it easier to live smarter. You're welcome. Get all the info you need from AM to PM, wherever you are.
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Kinga Kamieniarz-Gdula @stoplab.bsky.social · 27/12/2024
At this END of YEAR please check out our new paper on GENE ENDS and a convenient marker of transcription termination: RNAPII CTD T4ph! We think it is relevant to anyone studying human/animal #genes and #genome so put a lot of effort to make it easy to read. #RNABiology and #Epigenetics meet:)
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 24/12/2024
Fulfilling a family tradition the day before Christmas. Hike to la Picota #Cantabria
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Elisabeth Bik @elisabethbik.bsky.social · 17/12/2024
Finally! The Hydroxychloroquine study by Gautret et al. has been retracted. I wrote a critical post about it in March 2020, days after it came out. scienceintegritydigest.com/2020/03/24/t...
scienceintegritydigest.com
Thoughts on the Gautret et al. paper about Hydroxychloroquine and Azithromycin treatment of COVID-19 infections
There has been a lot of excitement – and even a presidential tweet about a recent paper from the lab of Didier Raoult, an infectious disease specialist in Marseille, France. But although this…
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Lonni Besançon @lonnibesancon.bsky.social · 17/12/2024
It has taken more than 4 years but the methodologically poor (doi.org/10.1016/j.th...) and questionable paper (1-day peer review bmcmedresmethodol.bi...) that promoted HCQ for COVID-19 is finally retracted. We've been saying for years it had to be (doi.org/10.1016/j.th...).
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The Athletic Club 🦁 @handle.invalid · 04/12/2024
FT at San Mamés! Athletic Club 2-1 Real Madrid!! YES!!! After 9 years, 8 months and 27 days, Athletic have finally beaten Madrid in La Liga!! What a performance by our Lions!! Goals by Álex & Guru, with a penalty save by Julen! Goazen Lehoiak!🦁 Lion of the Match:
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Café Fútbol @cafefutbol.bsky.social · 04/12/2024
La garra del Athletic Club es demasiado para el Real Madrid, que cae en La Catedral #LaLiga
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Fany M. Real @fany-real.bsky.social · 01/12/2024
Ever wondered how bats develop wings from their hands? 🦇✨ Check out our new preprint and the thread below! 🤓 👏Big applause to our amazing first authors Magdalena Schindler and Christian Feregrino and thanks to all our co-authors for their help! 🥂 www.biorxiv.org/content/10.1...
biorxiv.org
Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene program in bat wing development
Bats are the only mammals capable of self-powered flight, an evolutionary innovation based on the transformation of forelimbs into wings. The bat wing is characterized by an extreme elongation of the ...
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Boris Lenhard @borislenhard.bsky.social · 02/12/2024
Great work by @sviatoslavsidorov.bsky.social !
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Craig Kaplan @triggerloop.bsky.social · 27/11/2024
As you make have seen, there is a special issue of JMB on "Controlling Transcription Elongation and Termination: More Than a Means to An End" curated by my colleague here at Pitt Karen Arndt and by Steve Buratowski from Harvard Medical School 🧪🧵 1/ www.sciencedirect.com/science/arti...
sciencedirect.com
Controlling Transcription Elongation and Termination: More Than a Means to An End
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Rob Klose @robklose.bsky.social · 26/11/2024
Here it is! Congratuations to @jesskelley.bsky.social @edimitrova.bsky.social @neilblackledge.bsky.social @aleksszczurek.bsky.social and the rest of the team (Maciej, Amy, and Hieu). This was a fab collaboration with Arminja Kettenbach. Also see a lovely complementary paper from Fei Chen's group.
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Maxim Greenberg @maxvcg.bsky.social · 12/11/2024
I've been meaning to write a lengthy thread about our experiences with DNA methylation editing in mouse ESCs if that would be useful (or interesting?) for a niche audience here. tl;dr: it was frustrating but we learned a lot, and it ended with our shiny new pub (1/17) www.nature.com/articles/s41...
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Robin Andersson @randersson.bsky.social · 25/11/2024
Check out our latest work, scE2G, for mapping the target genes of enhancers from single cell data! www.biorxiv.org/content/10.1... Amazing work led by co-first authors @mayayayas.bsky.social and @613weilin.bsky.social in a great collaboration with @jengreitz.bsky.social's lab See 🧵 by Wei-Lin ⬇️
biorxiv.org
Mapping enhancer-gene regulatory interactions from single-cell data
Mapping enhancers and their target genes in specific cell types is crucial for understanding gene regulation and human disease genetics. However, accurately predicting enhancer-gene regulatory interac...
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Rada-Iglesias Lab @radaiglesiaslab.bsky.social · 24/11/2024
Thanks @joadelas.bsky.social for visiting us and sharing your exciting projects with us. You , @jcacosta.bsky.social and Silvia Remeseiro did a great job during María’s defense.
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Axel Visel @axelvisel.bsky.social · 27/05/2024
REX - a mammalian "range extender" element that can turn short-distance enhancers into long-distance enhancers. New preprint from a collaboration led by Grace Bower and Evgeny Kvon. doi.org/10.1101/2024...
Schematic overview of the proposed mode of action of the newly discovered REX element. Top: An enhancer can activate a gene at a short distance, but not at at long range. Middle: Presence of (C/T)AATTA motifs within an enhancer enable it to act over long distances. Bottom: Coupling a short-range enhancer to the REX element containing the same motifs turns it into a long-range enhancer.
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