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Egon Willigh☮gen 🟥

@egonw.mastodon.social.ap.brid.gy
869 followers 26 following 1.7K posts

Chem/Bio/Stats/SemWeb, the CDK, WikiPathways, TGX @ Maastricht University (these posts are personal) (he/him). Here particularly #opensource #openstandards and […] 🌉 bridged from ⁂ mastodon.social/@egonw, follow @ap.brid.gy to interact

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Reposted by Egon Willigh☮gen 🟥
OpenTech(AUC) @opentech-auc.social.edu.nl.ap.brid.gy · 23m
Question: why doesn't the UN have a Mastodon server? It could host the accounts of all the different UN bodies and representatives at a tiny fraction of its budget, and it would be a major improvement of it's digital independence. Is there anyone here who can pitch this somewhere? […]
social.edu.nl
Original post on social.edu.nl
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Reposted by Egon Willigh☮gen 🟥
DW Innovation @dw-innovation.mastodon.social.ap.brid.gy · 4h
This happened: According to several sources (e.g. The Guardian), the US government "pressured multiple countries to withdraw their sponsorship of a leading European conference on #disinformation, with Canada, Lithuania and the EU’s diplomatic service subsequently agreeing to do so." […]
mastodon.social
Original post on mastodon.social
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Reposted by Egon Willigh☮gen 🟥
Albin Larsson @abbe98.mastodon.social.ap.brid.gy · 3h
Just watched two government organizations bragging about how they use AI to copy information from Google Streetview and a Wikimedian asking them to import said data to Wikidata. Maybe we should just abolish copyright altogether.
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 3h
niet 15 miljoen mensen, maar 15 miljoen *huishoudens*
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Reposted by Egon Willigh☮gen 🟥
Patrick Breyer @echo-pbreyer.digitalcourage.social.ap.brid.gy · 14/10/2026
🇪🇺 Private chats and emails reported via #ChatControl 1.0 are ending up in #Palantir systems - scandalous! This includes direct messages on Instagram, TikTok, Discord, Snapchat, Skype and Xbox, as well as emails via Gmail. Details […]
digitalcourage.social
Original post on digitalcourage.social
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Reposted by Egon Willigh☮gen 🟥
Beilstein-Institut @beilsteininstitut.hessen.social.ap.brid.gy · 14/10/2026
No code needed: our open-source tool BChemXtract now has a web interface, BChemXtractWeb. ✅ Extracts structures from CDX/CDXML files ✅ Generates SMILES, InChI, InChIKey, and formula ✅ Links to PubChem ✅ Exports to SDF, Molfile V3000, and JSON 🔗 […] [Original post on hessen.social]
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 14/10/2026
"ICE voert grootschalige razzia’s uit in Californië" mstdn.social/@locuta/11743765148759…
mstdn.social
Kirsten Verdel (@locuta@mstdn.social)
Trump dag 632: Ambassadeur Guilfoyle stapt op, bezwaartermijn vluchtelingen van 30 naar 10 dagen, Trump verleent bij rally gratie aan twee monteurs, VS waarschuwde Oekraïne niet voor aanval, nieuwe perswoordvoerder Zacharia onder vuur over diploma: https://reportersonline.nl/trump-dag-632-ambassadeur-guilfoyle-stapt-op-noodtoestand-stroomnet-in-13-staten-bezwaartermijn-vluchtelingen-van-30-naar-10-dagen-trump-verleent-bij-rally-gratie-aan-twee-monteurs-vs-waarschuwde/
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 13/10/2026
if you want to learn about the new @biohackrxiv features, read this new preprint: osf.io/preprints/biohackrxiv/vxgka_…
osf.io
OSF
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 13/10/2026
I wish everyone attending the OSC-NL Barcamp 2026 a great time! And also at the #nosf2026 tomorrow too!
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Reposted by Egon Willigh☮gen 🟥
Translate Science @translatescience.fediscience.org.ap.brid.gy · 12/10/2026
Question about locating translations of popular science books Does anyone in our community have any tips for finding out which languages a book has been translated into? We'd also then want to get metadata, especially the name of the translator. #libraries #translation
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 12/10/2026
I know it is quite questionable, but that does not seem to stop people nowadays... Are you seriously telling me no one used an LLM bot yet to email authors with a reasonable request for their data? I mean, why stop at one article?
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Reposted by Egon Willigh☮gen 🟥
Misha @mishavelthuis.social.edu.nl.ap.brid.gy · 12/10/2026
"De beslissing moet daarom een wake-upcall zijn voor de Europese Unie om vaart te maken met digitale soevereiniteit. Vrijwel alle cruciale infrastructuur en diensten in de EU draaien op software en digitale systemen van de grote Amerikaanse techbedrijven die naar het pijpen van Donald Trump […]
social.edu.nl
Original post on social.edu.nl
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Reposted by Egon Willigh☮gen 🟥
OpenTech(AUC) @opentech-auc.social.edu.nl.ap.brid.gy · 12/10/2026
The attack on #autisticiinventati was just a prelude, and the attack on the #ICC is just the opening chord. We need to move our communities away from Big Tech #now. If necessary at considerable costs. www.theguardian.com/us-news/2026/oc…
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 12/10/2026
I had paid in a pre-order in NL, but got a refund because it turned out to be already sold out
journa.host
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 12/10/2026
I did not know about the Day of Civil Courage celebration, but I wish you a good Day of Civil Courage, everyone!
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Reposted by Egon Willigh☮gen 🟥
Lars Willighagen @larsgw.mastodon.social.ap.brid.gy · 11/10/2026
@egonw they have a SynthID watermark :/
Screenshot of the OpenAI SynthID watermark checker, with Dutch text: "Gegenereerd met OpenAI-tools. Deze content is gegenereerd met OpenAI-tools. De onderstaande signalen geven ondersteunend bewijs voor dit resultaat." This is followed by a picture of two antlered deers sitting in the shadows of two haybales, resembling snails. More Dutch text: "SynthID gedetecteerd. We hebben een SynthID-watermerk gevonden dat afkomstig is van OpenAI." "Inhoudsgegevens niet gevonden. We hebben geen vertrouwd C2PA-manifest gevonden dat afkomstig is van OpenAI."
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 11/10/2026
nice, those antler snails, but some attribution would be welcome
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Reposted by Egon Willigh☮gen 🟥
petersuber @petersuber.fediscience.org.ap.brid.gy · 11/10/2026
All the editors of Elsevier's 𝘎𝘢𝘮𝘦𝘴 𝘢𝘯𝘥 𝘌𝘤𝘰𝘯𝘰𝘮𝘪𝘤 𝘉𝘦𝘩𝘢𝘷𝘪𝘰𝘳 just resigned in protest at Elsevier's firing of one editor and attempt to hire new editors without involving the current board. The Game Theory Society is cutting off its association with the journal, and "exploring the establishment of […]
fediscience.org
Original post on fediscience.org
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Reposted by Egon Willigh☮gen 🟥
WikiPathways @wikipathways.fosstodon.org.ap.brid.gy · 11/10/2026
October 2026 WikiPathways update: 30 edits in 45 pathways by 2 contributors, including 12 new pathways and 2 new species (Bombyx mori and Apis cerana): www.wikipathways.org/index.php/Down… #bioinformatics #openscience #opensource More news at […]
fosstodon.org
Original post on fosstodon.org
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Carole Cadwalladr @carolecadwalla.bsky.social · 11/10/2026
NEW: Prime Minister Andy Burnham finally breaks a decade of UK govt silence…& reveals there was ‘clear’ Russian interference in the Brexit vote. 1/
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Reposted by Egon Willigh☮gen 🟥
Misha @mishavelthuis.social.edu.nl.ap.brid.gy · 11/10/2026
Turns out that #Columbus was also out to kill Muslims in #Jerusalem: bookrastinating.com/user/misha/quot… #NaomiKlein #EndTimesFascism #ColumbusDay @rubaiyat mastodon.social/@rubaiyat/117419821…
bookrastinating.com
"Most of us have a general sense of Christopher Columbus;s fateful voyage. Less knows is the fact that he was seeking a far grander destination than Asia (or as he called it, the Indies) when he bumped into an entirely unexpected continent. Yes, he traveled in search of spices and gold, and he wanted to claim territories and convert souls. But Columbus also sought those riches because he believed he could usher in the literal end of days. Like Messianic Christians today, Columbus was entranced by the Book of Revelation, otherwise known as the Apocalypse of St. John, the Bible's vertiginous final chapter. He dreamed of financing a new crusade to take Jerusalem from the Muslims, the supposed precondition for bringing about the Christian millennium, and he knew that such a momentous undertaking would not be cheap." — Naomi Klein, Astra Taylor: _End Times Fascism:_, pp. 68-69
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Reposted by Egon Willigh☮gen 🟥
Lambert Heller @lambo.openbiblio.social.ap.brid.gy · 11/10/2026
"Has AI already read your books?" 01. Enter a book or a catalogue An ISBN, a title and author, or a CSV, Excel or ONIX file. We check every edition of a title. 02. We search the collections Books3, LibGen, Z-Library and Anna's Archive. You see each collection's own record of your book. 03 […]
openbiblio.social
Original post on openbiblio.social
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Reposted by Egon Willigh☮gen 🟥
Egon Willighagen @egonw.social.edu.nl.ap.brid.gy · 11/10/2026
the possible risks of new scientific knowledge is not limited to natural sciences. Our knowledge about the human brain, our knowledge of society, very much too. Just think political ads. "Encouraging Americans to hate one another is an unfortunate side effect." -- Lieberman and Long
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Christian Meesters @rupdecat.fediscience.org.ap.brid.gy · 11/10/2026
@egonw personally, I very much like the idea of searching for cited DOIs using crossref very much. E.g. with this software of mine from github.com/cmeesters/nanopub-cito-c…. I have to admit, development ceased due to all my troubles last year. It […] [Original post on fediscience.org]
Screenshot of a tool which creates Citation Ontologies using nanopublications. It receives a DOI and checks for cited references using crossref. If sucessful, the cited DOI is offered and citation types can be crossed using a mouse. Green and red types indicate endorsement types or their opposite, respectively.
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 11/10/2026
🤦
ohai.social
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 11/10/2026
I now have a CiTO helper CLI tool: java25 -jar target/citopub.jar 10.1000/a cito:cites cito:usesMethodIn 10.1000/b cito:usesMethodIn 10.1000/c That creates me a @nanopub template link to nanodash, like this one […]
mastodon.social
Original post on mastodon.social
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petersuber @petersuber.fediscience.org.ap.brid.gy · 10/10/2026
Canada's new and stronger Tri-Agency #OpenAccess Policy on Publications applies to grants awarded on or after January 1, 2027. It upgrades the 2016 policy […]
fediscience.org
Original post on fediscience.org
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Koen Hufkens, PhD @koen-hufkens.mastodon.social.ap.brid.gy · 10/10/2026
@egonw In vele gevallen is preventieve zorg goedkoper dan "echte" zorg. Maar bon, niemand wilt investeren in mensen dus de rekening blijft liggen - en valt duurder uit. Je ziet dit overal, gezondheid, klimaat, etc.
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Brent Toderian @brenttoderian.bsky.social · 10/10/2026
“EU drops sponsorship of disinformation conference at Trump officials’ request. Lithuania/Canada were also pressured to withdraw…days before #Disinfo2026, logos were wiped off website.” So the US used disinformation to undermine a disinformation conference telling the truth about US disinformation.
theguardian.com
EU drops sponsorship of disinformation conference at Trump officials’ request
Lithuania and Canada were also pressured to withdraw, and days before #Disinfo2026, logos were wiped off website
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 10/10/2026
<rant> Commercials publishers are talking bullshit when they block (technical) innovations in the publishing model, sticking to false truths like "the authors do not want..." You are servicing some of the most intelligent and/or hardest working researchers in the world, and you honestly think […]
mastodon.social
Original post on mastodon.social
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 10/10/2026
meanwhile, very excited that while the growth is not (yet) exponential, the CiTO annotations continue to grow (next year we launch a newsletter with DOIs for articles where we will support CiTO too). Overview here: qlever.scholia.wiki/cito #openscience #fair #academicchatter
Screenshot of the "Number of articles with CiTO-annotated citations, by year" panel of the linked Scholia page. It focuses on works in J.Cheminform. and BioHackrXiv and the original CiTO 2010 article. This year we will have a new record number of manuscripts with explicit CiTO annotation.
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 10/10/2026
ah, yeah, that was not working great yet. I am looking forward to seeing how that works out. In both directions!
mastodon.social
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Leave X - Protect Democracy @leavex.mastodon.social.ap.brid.gy · 09/10/2026
Fantastic! The Open Social Web is making its way into the German Bundestag (@bundestag)! MP **Anna Lührmann** (@annaluehrmann) speaks about the Open Social Web Alliance, Mastodon and Eurosky in the German parliament, and invites the federal government to […] [Original post on mastodon.social]
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Chris Alemany🇺🇦🇨🇦🇪🇸 @chris.mstdn.chrisalemany.ca.ap.brid.gy · 09/10/2026
Trump turns to Putin and Russia for diesel, before the midterms, during a war, where the USA is — apparently — on the Ukrainian side. Russian stocks spike. Sanctions? what Sanctions? Allies? What Allies? Oh, and also on the same day that the USA […] [Original post on mstdn.chrisalemany.ca]
The fascist uttered:

Donald J. Trump « *
@realDonaldTrump
I have just concluded a highly successful discussion with
President Vladimir Putin, of Russia, wherein it was agreed that
Russia will immediately supply over 300,000 Tons of Diesel Fuel
to the American and Global Marketplace, another 500,000 Tons
during the month of November, and 1,000,000 Tons immediately
thereafter. Additionally, based on the condition of their Diesel
Refineries, Russia will then deliver, within a short period of time,
3,000,000 Tons of Diesel Fuel. Between our TOTAL CONTROL of
the Strait of Hormuz, and this great announcement on Russian
Energy, Diesel Prices for Americans and, indeed, the World, will
be COMING DOWN, IN RECORD NUMBERS, AND FAST! Lower
prices for Americans, especially our Great Farmers, Ranchers,
and Truckers, is my Greatest Priority. This is a very big and
important announcement. Additionally, it must be understood,
that Iran will not have a Nuclear Weapon! Thank you for your
attention to this matter. President DONALD J. TRUMP
1.98k ReTruths 7.58k Likes
Oct 09, 2026 at 11:46 AM
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BioHackrXiv @biohackrxiv.fediscience.org.ap.brid.gy · 10/10/2026
"DBCLS BioHackathon 2026 report: An interactive, harmonised BioSample metadata resource for biological sample discovery" doi.org/10.37044/osf.io/hm9fn_v1 #biohackathon #BH26JP #BioSamples #bioinformatics "The BioSample database contains tens of […] [Original post on fediscience.org]
Figure 2: Screenshots of the sample search and visualization system. (A) Results of selecting liver asthe tissue and searching for liver samples from human RNA-seq experiments. (B) Heatmap showing the number of human RNA-seq samples to which the selected ontology terms were mapped, with 10 disease terms and 10 drug terms specified. (C) Distribution of the experimental conditions investigated under Kras knockout in mouse RNA-seq samples, with Kras specified as the  knockout gene. (D) Line graph showing the annual number of submissions of human lung RNA-seq samples.
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ELIXIR-Netherlands @elixir-nl.bsky.social · 09/10/2026
Join us at the ELIXIR-NL Symposium 2026 to explore FAIR workflows, AI-ready infrastructure, data management and BioHackathons with the Dutch life science data community. 📅 1 December 2026 | 📍 LUMC, Leiden 🎟️ Free registration: www.aanmelder.nl/elixirnlsymp...
aanmelder.nl
ELIXIR-NL Symposium 2026 - Register
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Reposted by Egon Willigh☮gen 🟥
Marloes de Koning :check: @marloesdekoning.nrc.social.ap.brid.gy · 08/10/2026
Tijd voor taart en slingers. We hebben zojuist succesvol het account van @NRC gemigreerd van mastodon.nl naar onze eigen server nrc.social. Tegen de vrijwilligers achter mastodon.nl zeg ik: dank voor de goede zorgen! I'll take it from here. Overigens blijft het devies dat we klein beginnen. Ik […]
nrc.social
Original post on nrc.social
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Marloes de Koning :check: @marloesdekoning.nrc.social.ap.brid.gy · 08/10/2026
Wat een interessant bericht. Dank voor delen. Veel mensen benadrukten de afgelopen weken tegen me dat het effect van Amerikaanse sancties op het betaalverkeer veel groter is dan op 'het internet'. #AutisticiInventati #ICC @hrifeu
waag.social
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Dept of Translational Genomics @tgx-um.social.edu.nl.ap.brid.gy · 07/10/2026
News: "TGX in Brno: second half of the ELIXIR exchange with RECETOX" www.maastrichtuniversity.nl/news/tg… #elixirEurope @elixir-nl.bsky.social "From 24 to 28 August, Egon, Denise, Javier and Marvin drove to […] [Original post on social.edu.nl]
Photo of the TGX and RECETOX researchers in front of an entrance of Masarykova Univerzita.
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Anna Haunthro @annaanthro.mastodon.social.ap.brid.gy · 07/10/2026
The #Trump admin has officially blocked European election monitoring of the US midterms in November. The US elections have been monitored since 2003. “In recent years, the OSCE has been unable to monitor elections in #Belarus, #Georgia, and #Tajikistan due to the refusal of these governments […]
mastodon.social
Original post on mastodon.social
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Egon Willigh☮gen 🟥 @egonw.mastodon.social.ap.brid.gy · 06/10/2026
they will probably be labeled terrorist in modern UK
zeroes.ca
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Charles Tapley Hoyt @cthoyt.scholar.social.ap.brid.gy · 05/10/2026
just submitted an abstract to present @bioregistry at the @linkml@fosstodon.org 2026 Virtual LinkML Community Symposium the proposed talk is about the `bioregistry validate linkml` command, which can help LinkML modelers to choose standard prefixes for their CURIEs and URIs it'll expand on […]
scholar.social
Original post on scholar.social
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kim_harding ✅ @kim-harding.mastodon.scot.ap.brid.gy · 05/10/2026
Method for controlling brain cells with light wins Nobel www.science.org/content/article/met… Karl Deisseroth, Peter Hegemann, and Georg Nagel honored for developing optogenetics
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Paul Smedley 🏴󠁧󠁢󠁥󠁮󠁧󠁿 🏴󠁧󠁢󠁳󠁣󠁴󠁿 🇺🇦 @paulsmedley.bsky.social · 05/10/2026
#NARCISSISTIC-SOCIOPATH
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kim_harding ✅ @kim-harding.mastodon.scot.ap.brid.gy · 05/10/2026
How did Rosalind Franklin miss the helix in her iconic DNA image? She didn’t www.science.org/content/article/how… New analysis refutes James Watson’s claim he was first to recognize significance of famed photograph 51
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Bonfire @bonfire.bonfire.cafe.ap.brid.gy · 05/10/2026
Belgian journalism cooperative Apache is going to be testing Bonfire as a space for its readers, inspired by #Jacobin work in Germany. Independent media building community spaces where readers and journalists can meet, participate, and connect across the fediverse. This is the kind of social web […]
bonfire.cafe
Original post on bonfire.cafe
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Degrowth or Extinction @ecosurrealism.jorts.horse.ap.brid.gy · 04/10/2026
#thePoint #mastodon #degrowth #burnTheRich
there is this meme of a person rejecting on the upper box.
and down acknowledging.
on the top says:
"banning teenagers from using social media"
on the bottom one says
"banning billionaires from owning social media"
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Djoerd Hiemstra 🍉 @djoerd.idf.social.ap.brid.gy · 04/10/2026
4 oktober dierendag
Poster van wakker dier: Zullen we eens een dagje niet 650.000 dieren eten?
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petersuber @petersuber.fediscience.org.ap.brid.gy · 03/10/2026
Watching with interest: 𝘝𝘪𝘵𝘢 is a new #DiamondOA biomed journal from China, publishing in English. www.vita-journal.com/vita/EN Article about it in 𝘕𝘢𝘵𝘶𝘳𝘦 (which does not link to the journal). www.nature.com/articles/d41586-026-… From the 𝘕𝘢𝘵𝘶𝘳𝘦 article: 𝘝𝘪𝘵𝘢 "has set […]
fediscience.org
Original post on fediscience.org
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