Recent efforts in protein language modeling have focused on scaling single-sequence models and their training data, requiring vast compute resources that limit accessibility. Although models that use ...

The growth of metagenomics-derived amino acid sequence data has transformed our understanding of protein function, microbial diversity and evolutionary relationships. However, the vast majority of the...

The majority of genetic variants identified in genome-wide association studies of complex traits are non-coding, and characterizing their function remains an important challenge in human genetics. Gen...

Join us for an insightful webinar with BigOmics Analytics as we showcase the integration of Omics Playground into Studios as a powerful new way to interactively explore RNA-Seq and proteomics results ...

YouTube video by Nextflow

Today, we're ecstatic to announce that Seqera has raised $26 million in Series B funding, led by Addition with participation from Speedinvest, Talis, Amino Collective, BoxOne, and SNR. This milestone ...

None

We are thrilled to announce Air, a new R formatter.

How I turned a Jupyter notebook into a full-fledged Python package for UpSet plots

Borzoi adapts the Enformer sequence-to-expression model to directly predict RNA-seq coverage, enabling the in-silico analysis of variant effects across multiple layers of gene regulation.

Contribute to ScaleBio/ScaleMethyl development by creating an account on GitHub.

Reproducibility in untargeted metabolomics data processing remains a significant challenge due to software limitations and the complex series of steps required. To address these issues, we developed N...

The next generation of Python notebooks

This is a really neat pattern. Start your Python script like this: #!/usr/bin/env -S uv run # /// script # requires-python = ">=3.12" # dependencies = [ # "flask==3.*", # …

My private module for Doom Emacs. Contribute to edmundmiller/.doom.d development by creating an account on GitHub.

aider is AI pair programming in your terminal. Contribute to Aider-AI/aider development by creating an account on GitHub.

Recorded by emiller

BAAIWorm is an integrative data-driven model of C. elegans that simulates interactions between the brain, body and environment. The biophysically detailed neuronal model is capable of replicating the ...