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Edmund Miller

@edmundmiller.dev

1.4K followers 2K following 70 posts

PhD Candidate @ UT Dallas in the Functional Genomics Lab working on Nascent RNA identification @nf-co.re Bioinformatics Engineer @seqera.io link.edmundmiller.dev

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Edmund Miller @edmundmiller.dev · 20/01/2025

Went down a rabbit hole this weekend and wrote my first Python package that I published end to end! It's just a package of a wonderful Jupyter notebook for making UpSet plots in Altair! github.com/hms-dbmi/ups...

Upset plot of Shared Mutations of COVID Variants

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Edmund Miller @edmundmiller.dev · 11/11/2024

I also never thought of flatMap like this🤔 www.solshenker.com/assets/image... training.nextflow.io/advanced/ope... #nextflow

A graphic showing the flatMap Nextflow operator taking tuples on the left and reformatting them in a "flat" way on the right.

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Edmund Miller @edmundmiller.dev · 11/11/2024

Awesome blog post I stumbled on by @seqcmd.bsky.social while looking for a scatter-gather infographic! Bonus points for using #nextflow! www.solshenker.com/nextflow-sca... www.solshenker.com/assets/image...

Scatter-gather diagram, illustrating the shorter wall time when using the method.

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