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Diego Ortega-Del Vecchyo

@delvecchyo.bsky.social
545 followers 514 following 154 posts

Associate professor @liigh-unam.bsky.social. Interested on theoretical population genetics and developing new computational methods to understand our past. He/him/his.

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Reposted by Diego Ortega-Del Vecchyo
Xinjun Zhang @zhanglabpopgen.bsky.social · 16/12/2025
Preprint online right before the holidays! Excited to share the first piece of work from the Zhang Lab, led by my absolutely stellar postdoc Michelle Kim! In this work, we ask how admixture, selection and demography shape complex trait genetics and GWAS performance www.biorxiv.org/content/10.6...
biorxiv.org
Determining the driving factors shaping genetic architecture of complex traits in recently admixed populations
Understanding the genetic architecture of complex traits in admixed populations remains challenging due to heterogeneous genetic backgrounds and demographic histories. Mischaracterizing admixture can ...
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Reposted by Diego Ortega-Del Vecchyo
Yun Deng @yundeng.bsky.social · 26/11/2025
Work from my amazing undergrad @leyan-wang.bsky.social is just preprinted! TL;DR: If you worry that ARG methods might fail on unphased data due to phasing errors, you may not need to. Check it out & consider reposting to support a great young scientist!
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Reposted by Diego Ortega-Del Vecchyo
Roshni Patel @roshnipatel.bsky.social · 01/12/2025
Excited to share work from my postdoc with @docedge.bsky.social and collaborators Matt Pennell and @jgschraiber.bsky.social, newly out over the weekend: www.biorxiv.org/content/10.1... (1/6)
biorxiv.org
Observational epidemiological studies can mitigate genetic confounding with the genetic relatedness matrix
Observational studies are commonly used in psychology and epidemiology to identify risk factors correlated with health outcomes. However, these studies are vulnerable to confounding when shared geneti...
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 09/10/2025
Alessandro and I discussed a paper analyzing a deleterious genetic interaction that causes melanoma in swordtail fishes.
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Reposted by Diego Ortega-Del Vecchyo
Nature Reviews Cancer @natrevcancer.nature.com · 07/10/2025
In this #Journal Club, @delvecchyo.bsky.social &Co discuss a study that mapped the genetic basis of hybrid incompatibility in swordtail fish, revealing #melanoma-causing gene interactions that reduce survival in natural hybrid populations. 📖 ⬇️
nature.com
Discovering genetic interactions that cause melanoma in a non-model species - Nature Reviews Cancer
In this Journal Club, Lopez-Hernandez and Ortega-Del Vecchyo discuss a study that mapped the genetic basis of hybrid incompatibility in swordtail fish, revealing melanoma-causing gene interactions that reduce survival in natural hybrid populations.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 24/09/2025
Alessandro and I discussed this great paper www.science.org/doi/10.1126/... that investigates a deleterious genetic interaction that causes melanoma.
science.org
Natural hybridization reveals incompatible alleles that cause melanoma in swordtail fish
A combination of mapping approaches identifies interacting genes that lead to incompatibility and melanoma in natural hybrid fish.
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Reposted by Diego Ortega-Del Vecchyo
Fernando Villanea @fervillanea.bsky.social · 21/08/2025
Our paper on the evolution of MUC19 in humans, Neanderthals, and Denisovans is finally out today in Science! This has been a six-year effort by 13 authors to weave together 3 separate but related evolutionary stories around this one gene (more on thread 🧵). www.science.org/doi/10.1126/...
science.org
The MUC19 gene: An evolutionary history of recurrent introgression and natural selection
We study the gene MUC19, for which some modern humans carry a Denisovan-like haplotype. MUC19 is a mucin, a glycoprotein that forms gels with various biological functions. We find diagnostic variants ...
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 22/08/2025
Gaceta UNAM cubrió nuestra investigación sobre el impacto de la selección natural en la predicción genética de rasgos complejos en individuos del pasado: www.gaceta.unam.mx/la-seleccion...
gaceta.unam.mx
La selección natural complica las predicciones genéticas - Gaceta UNAM
Hacen menos confiables los análisis de características físicas en humanos antiguos, afirma artículo publicado en la revista científica The American Journal of Human Genetics, en el cual participa un g...
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 19/07/2025
Trying something with huitlacoche (such as quesadilla of huitlacoche) is a good and interesting choice. Other good things to try are guacamole as well as "Chile relleno de queso".
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 19/07/2025
I just saw this message! Going to one branch of the "El Cardenal" restaurants is a good choice. They have good salads and omelettes. They also have some dishes made with avocado, huitlacoche (corn fungus which is delicious), Poblano (pepper) and cheese.
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Reposted by Diego Ortega-Del Vecchyo
Emily Josephs @emjo.bsky.social · 12/06/2025
Hey, Miles' @milesroberts.bsky.social beautiful paper showing that sequence diversity missed by standard methods contributes to Lewontin's paradox is officially published in @evolletters.bsky.social. academic.oup.com/evlett/advan...
academic.oup.com
k-mer-based diversity scales with population size proxies more than nucleotide diversity in a meta-analysis of 98 plant species
Abstract. A key prediction of neutral theory is that the level of genetic diversity in a population should scale with population size. However, as was note
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Reposted by Diego Ortega-Del Vecchyo
Arun Durvasula @arundurvasula.bsky.social · 11/06/2025
Our review of recent Sequentially Markovian Coalescent methods is up on arXiv: arxiv.org/abs/2506.00692 (based on last year's @official-smbe.bsky.social symposium)
arxiv.org
Not Just $N_e$ $N_e$-more: New Applications for SMC from Ecology to Phylogenies
Genomes contain the mutational footprint of an organism's evolutionary history, shaped by diverse forces including ecological factors, selective pressures, and life history traits. The sequentially Ma...
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 10/06/2025
Happy to have worked on this project with @mashaals.bsky.social , Emilia Huerta-Sanchez and Valeria Añorve-Garibay. We analyzed how stabilizing and directional selection cause problems to predict traits in ancient samples.
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Reposted by Diego Ortega-Del Vecchyo
The American Journal of Human Genetics @ajhgnews.bsky.social · 10/06/2025
📣Online now! 📄Natural selection acting on complex traits hampers the predictive accuracy of polygenic scores in ancient samples 🧑‍🤝‍🧑 @delvecchyo.bsky.social @mashaals.bsky.social & co
cell.com
Natural selection acting on complex traits hampers the predictive accuracy of polygenic scores in ancient samples
Using polygenic scores, we find that two types of natural selection, stabilizing selection and directional selection, can decrease the prediction accuracy of complex traits in ancient individuals. We ...
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Reposted by Diego Ortega-Del Vecchyo
Daniela Robles-Espinoza @daniela-oaks.bsky.social · 12/01/2025
We continue with the #human genetic variation and ancient #genomics session! Our next speaker is @delvecchyo.bsky.social, who is telling us about how to use geographical and temporal information to infer the action of natural #selection @liigh-unam.bsky.social #LIIGH10anniversary
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Reposted by Diego Ortega-Del Vecchyo
Daniela Robles-Espinoza @daniela-oaks.bsky.social · 11/01/2025
The next talk is by PhD student Alan Izarraras from @delvecchyo.bsky.social's group, and he is telling us about how to infer the distribution of fitness effects using local genealogies @liigh-unam.bsky.social #LIIGH10anniversary
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Reposted by Diego Ortega-Del Vecchyo
Paleogenomics - María Ávila Arcos @paleogenomics.bsky.social · 18/11/2024
🚨🪅 Registration is NOW OPEN for our Symposium on Ancient Pathogen Genomics! 🦠🧬 Join us on April 12-13 2025 in Juriquilla, Mexico. Featuring top speakers & great science in a beautiful venue! Plz RT ! liigh.unam.mx/apg/ 🪅🚨
liigh.unam.mx
Ancient Pathogens Genomics International Symposium
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Reposted by Diego Ortega-Del Vecchyo
christiandhuber.bsky.social @christiandhuber.bsky.social · 04/01/2025
genestogenomes.org/digging-up-t...
genestogenomes.org
Digging up the recent past: how effective are genomic tools at deciphering our genetic ancestry?
Researchers evaluate the accuracy of common statistical methods to identify recent genetic ancestry in GENETICS.
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Reposted by Diego Ortega-Del Vecchyo
Ana Ignatieva @anaignatieva.bsky.social · 09/12/2024
New preprint (with @linoafferreira.bsky.social) where we explore the idea of using genealogies (in the form of ancestral recombination graphs, ARGs) to tell apart real GxG interaction signals between nearby variants from false positives www.biorxiv.org/content/10.1...
biorxiv.org
Phantom epistasis through the lens of genealogies
Phantom epistasis arises when, in the course of testing for gene-by-gene interactions, the omission of a causal variant (with a purely additive effect on the phenotype) causes the spurious inference o...
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 06/12/2024
Hi, I recommend checking out some of the papers and software we cite in our paper. Best of luck!
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 02/12/2024
Don't forget to submit your abstract for "Probabilistic Modeling in Genomics 2025". Deadline: January 10th, 2025. meetings.cshl.edu/meetings.asp...
meetings.cshl.edu
Probabilistic Modeling in Genomics
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 17/11/2024
Ese meme es mi filosofía moral.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 06/11/2024
Spending more time here sounds great!
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 30/09/2024
Thanks, Rebekah! Happy that our paths crossed as some of the last postdocs from Monty.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 30/09/2024
I have received tenure! I got here thanks to the support from my students, colleagues, mentors and home institution ( @liigh-unam.bsky.social ). I plan to continue doing research on Theoretical Population Genetics and developing methods to understand how Evolution has shaped our past.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
Natural selection can provoke substantial biases in predicting complex traits from ancient genomes using polygenic scores, so it’s crucial to consider its impact when predicting complex traits! 7/7
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
In addition, our simulations showed that both types of selection can hamper polygenic scores accuracy for traits like height and BMI, despite having complete genotype data and perfect effect size estimates. 6/7
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
This leads to a reduction in ancient polygenic scores accuracy for the first, and a reduction that depends on the allele effects for the later. 5/7
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
We found that while stabilizing selection accelerates the loss of high-effect alleles, directional selection leads to the loss of alleles that drive phenotypes away from the optimal value. 4/7
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
We observed that each type of selection creates a different pattern for the alleles that are lost and conserved through time between ancient and modern individuals. 3/7
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
Using forward in time simulations, we modeled a single additive trait evolving under neutrality, stabilizing selection and directional selection. We examined how each of these evolutionary dynamics affects ancient polygenic scores accuracy. 2/7
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
Thread by Valeria Añorve-Garibay reproduced here: We used a simulation-based approach to explore how natural selection acting on complex traits impacts the predictive accuracy of polygenic scores when applied to ancient samples. 1/7
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/09/2024
Our preprint analyzing the impact of stabilizing and directional selection on the prediction of complex traits in ancient samples is out. Work spearheaded by Valeria Añorve-Garibay in collaboration with Mashaal Sohail and Emilia Huerta-Sánchez. Thread below: www.biorxiv.org/content/10.1...
biorxiv.org
Natural selection acting on complex traits hampers the predictive accuracy of polygenic scores in ancient samples
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/07/2024
And also happy to see @psyduckresearch and @valenomics from our group giving talks at #SMBE2024
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 12/07/2024
Happy to see @Alanizarr, Sebastián Iturbe and Abad Guzmán from our group presenting their work during the poster session. #SMBE2024
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 11/07/2024
During dinner a lot of people were asking: "Where is the after party?". It is tomorrow at 9am. We have a great set of talks on new approaches to estimate demography and natural selection. Symposium organized with @valenomics #smbe2024
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 10/07/2024
"Community Engagement Experiences of the Afromexico Genomics Project" by @paleogenomics .
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Jesús Abad Guzmán-López will present his poster "The impact of natural selection in synonymous sites on patterns of genetic diversity" in the poster session from July 10th at 13:20-14:50. Joint work with @johriparul.bsky.social
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Sebastián Iturbe will present his work "Leveraging the Ancestral Recombination Graph to estimate the STR mutation model" in the poster session from July 9th at 13:20-14:50. Joint work with Rori Rolhfs and her group.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Alan Izarraras-Gomez will present his poster "Inference of the distribution of fitness effects using local genealogies" in the poster session from July 8th at 14:20-15:50. Joint work with Charleston Chiang and Christian D. Huber.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Alessandro López-Hernández will give the talk "A space-time model for jointly inferring gene flow and natural selection" on July 10th at 15:15-15:30 in the "Olas Altas" room.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Valeria Añorve will give the talk "The contribution of Neanderthal introgression to the heritability of human complex traits in Mexico" on July 10th at 15:30-15:45 in the "Boca de Tomates" room. Joint work with Mashaal Sohail and Emilia Huerta-Sánchez.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Our group will have a strong presence at #SMBE2024 . Two students will be giving talks and another three students will be presenting posters.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Jesús Abad Guzmán-López will present his poster "The impact of natural selection in synonymous sites on patterns of genetic diversity" in the poster session from July 10th at 13:20-14:50. Joint work with @Johri_Parul .
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
Sebastián Iturbe will present his work "Leveraging the Ancestral Recombination Graph to estimate the STR mutation model" in the poster session from July 9th at 13:20-14:50. Joint work with @rvrohlfs and her group.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
. @AlanIzarr will present his poster "Inference of the distribution of fitness effects using local genealogies" in the poster session from July 8th at 14:20-15:50. Joint work with @CharlestonCWKC and @christiandhuber .
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
. @PsyduckResearch will give the talk "A space-time model for jointly inferring gene flow and natural selection" on July 10th at 15:15-15:30 in the "Olas Altas" room.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 07/07/2024
. @valenomics will give the talk "The contribution of Neanderthal introgression to the heritability of human complex traits in Mexico" on July 10th at 15:30-15:45 in the "Boca de Tomates" room. Joint work with @mashaals and @emiliahsc .
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 06/07/2024
The abstract book is available online along with the scientific program and the travel guide to #smbe2024 #smbe24 smbe2024.org . Happy to see the community in Puerto Vallarta, Mexico soon.
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Diego Ortega-Del Vecchyo @delvecchyo.bsky.social · 31/05/2024
Don't forget to register for #SMBE2024 smbe2024.org today in order to be part of the scientific program if you were accepted to give a poster or oral presentation.
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