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Dear @anthropic.com, my lab builds a lot of OSS for genomics (github.com/COMBINE-lab). While we lack the widespread OSS market of popular NPM packages, pieces of our software are critical in biomedical research. Please consider extending your Claude Max offer to such labs!
github.com
COMBINE lab
COMputational BIology and Network Evolution lab. COMBINE lab has 137 repositories available. Follow their code on GitHub.
![library(tidymodels)
library(textrecipes)
data("tate_text", package = "modeldata")
tate_split <- initial_split(tate_text)
tate_train <- training(tate_split)
tate_test <- training(tate_split)
rec <- recipe(~ medium, data = tate_train) |>
step_tokenize(medium) |>
step_tfidf(medium, sparse = "yes") |>
prep()
bake(rec, tate_train, composition = "dgCMatrix") |> head()
#> 6 x 822 sparse Matrix of class "dgCMatrix"
#> [[ suppressing 822 column names 'tfidf_medium_1', 'tfidf_medium_10' ... ]]
#>
#> [1,] . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
#> [2,] . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
#> [3,] . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
bake(rec, tate_test, composition = "dgCMatrix") |> head()
#> 6 x 822 sparse Matrix of class "dgCMatrix"
#> [[ suppressing 822 column names 'tfidf_medium_1', 'tfidf_medium_10' ... ]]
#>
#> [1,] . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
#> [2,] . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
#> [3,] . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:on2hn6gvz6ezvxenqnnz4urx/bafkreibviwqpz6ioe4nmufayby4zavxrv5235m6e4pchulbeq2cldo4mb4)
