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Luis D. Verde Arregoitia

@liomys.mx
1.1K followers 434 following 202 posts

🇲🇽 - macroecology, evolution, conservation, spatial. #rstats, data. mammalogist. tidyverse and 🔨 instructor

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Reposted by Luis D. Verde Arregoitia
Emi Tanaka @emitanaka.org · 15h
I’m pleased to announce that Vol 18 Issue 3 of The R Journal is out now! 🥳 Free & open access, R journal is made possible by our volunteer editors, reviewers + contributing authors. Thank you all! journal.r-project.org/issues/2026-3/ 🧵 20 articles 👇 #rstats journal.r-project.org/issues/2026-3/
journal.r-project.org
The R Journal: Volume 18/3
Articles published in the September 2026 issue
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Reposted by Luis D. Verde Arregoitia
Isabella Velásquez @ivelasq3.bsky.social · 29/09/2026
If you're ever like, man which 40 new #RStats packages should I take a look at this month, may I introduce.... the CRAN Top 40 😎
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rOpenSci @ropensci.org · 29/09/2026
✍️[blog] Celebrating the rOpenSci Community by Mauro Lepore #RStats For rOpenSci’s 15th anniversary, Mauro reflects on his journey with the community & shares 5 lessons about collaboration, contribution, kindness, and the importance of human connections in the age of AI ropensci.org/blog/2026/09...
Mauro headshot. rOpenSci 15 years. Pixel Art with colorfull baloons, a folder, a mouse arrow and some sparkles.
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Reposted by Luis D. Verde Arregoitia
rOpenSci @ropensci.org · 29/09/2026
✍️[blog] Celebrando la comunidad de rOpenSci #RStats En el marco del 15 aniversario de rOpenSci, Mauro Lepore reflexiona sobre su recorrido y comparte 5 lecciones sobre colaboración, contribución, amabilidad y la importancia de las conexiones humanas en la era de la IA ropensci.org/es/blog/2026...
Foto de perfil de Mauro sonriendo en un marco de pixel art con globos de cumpleaños coloridos, una carpeta, la fechita del mouse y algunas chispas brillantes con el texto rOpenSci 15 years. Mauro Lepore.
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Reposted by Luis D. Verde Arregoitia
R Consortium @rconsortium.bsky.social · 25/09/2026
"Sustaining R: Investing in the People, Infrastructure, and Community Behind R" Register for Oct 6 R Core / R Foundation panel discussion Simon Urbanek, Kurt Hornik & Heather Turner. Hosted by R Consortium. r-consortium.org/webinars/sus... #RStats
"Sustaining R: Investing in the People, Infrastructure, and Community Behind R" - Register for Oct 6 R Core / R Foundation panel discussion
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Reposted by Luis D. Verde Arregoitia
We Are RLadies+ @weare.rladies.org · 24/09/2026
2. Bold indicates negative? (Luis D. Verde Arregoitia, Instituto De Ecología, A.c.) @liomys.mx youtu.be/NJz0779Seto. Lots of messy spreadsheets cross my desk, so this talk hit home.
youtu.be
Bold indicates negative? (Luis D. Verde Arregoitia, Instituto De Ecología, A.c.) | posit::conf(2025)
Bold indicates negative? 💬 Speaker(s): Luis D. Verde Arregoitia 📝 Abstract: Over one billion people worldwide use spreadsheets to manage and analyse data, often styling cells and their contents…
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Natalie Cooper @nhcooper123.bsky.social · 23/09/2026
Our update to the BES Data Management Guide is now live! assets.britishecologicalsociety.org/2026/09/2110... Huge thanks to the incredibly talented ECRs who contributed sections. It's an excellent resource that I've already used with my PhD students. ❤️
Cover image of the Data Management guide. Blue cover with a puffin on it! Also features the BES logo, Better Science Guides and our mission Through science we can.
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Luis D. Verde Arregoitia @liomys.mx · 22/09/2026
Would have liked to see a few talks about the new features in dplyr or even more on ellmer, for emotional support and reassurance
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Luis D. Verde Arregoitia @liomys.mx · 17/09/2026
Each year I try to be constructive and helpful with my talks at #positconf but ended up complaining about: - code comments (2024) - spreadsheets (2025) - IDEs + my dad fixing electronics with a kitchen knife (today)
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Luis D. Verde Arregoitia @liomys.mx · 16/09/2026
Gave my talk "Can I offer you a nice IDE in this trying time?" at #positconf earlier today and it went well slides here: luisdva.github.io/rstats/posit...
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Reposted by Luis D. Verde Arregoitia
Kelly Bodwin @kellybodwin.com · 16/09/2026
👏👏👏 to @liomys.mx for calling out the issue of academic works citing the IDE instead of the language/packages!
A slide containing many snippets of text from academic papers saying "analysis was performed with RStudio"Luis standing at a lectern
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trevin @trevinflickinger.com · 16/09/2026
loved @liomys.mx hand drawn slides at #PositConf2026 a breath of fresh air after so many AI art slides
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Luis D. Verde Arregoitia @liomys.mx · 11/09/2026
The @ropensci.org crew present at #positconf 2026 💪 ropensci.org/events/posit...
ropensci.org
posit::conf(2026)
rOpenSci community members are attending the Posit conference.
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Luis D. Verde Arregoitia @liomys.mx · 11/09/2026
Spotted at #RSEcon and foreshadowing #positconf
Street view in the uk
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Luis D. Verde Arregoitia @liomys.mx · 04/09/2026
Wrapped up a productive #rstats R-project sprint 2026 yesterday Cool people contributing to R over three days and lots of work done
Collage of six photos taken during a hackathon event
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Reposted by Luis D. Verde Arregoitia
Natalie Cooper @nhcooper123.bsky.social · 26/08/2026
Are you passionate about code integrity and accessibility? Do you have skills in R, Python or Julia? Why not apply to be one of our new Code Integrity and Accessibility AEs? Open to any career stage. Details here: apply.workable.com/britishecolo... (sadly not paid, but comes with nice perks)
apply.workable.com
Associate Editor (Code Integrity and Accessibility) - British Ecological Society
Volunteer role: Associate Editor (Code Integrity and Accessibility) Organisation: British Ecological Society – Methods in Ecology and Evolution Term: 3 years Closing date: 25th Sept 17.00 BST Location...
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Luis D. Verde Arregoitia @liomys.mx · 20/08/2026
¡el programa de RSLA26 está buenazo! 🔄 FAIR+Flujos de trabajo reproducibles 🤖 IA aplicada, agentes y Green Software 🏥 Datos biomédicos y salud pública 🌍 Datos geoespaciales y ciencias atmosféricas 📊 Investigación cualitativa/cienciometría 🐸 Biodiversidad/bioinformática rs-latam.org/programa.html
rs-latam.org
Programa – RSLA26
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Luis D. Verde Arregoitia @liomys.mx · 20/08/2026
¡el programa de RSLA26 está buenazo! 🔄 FAIR+Flujos de trabajo reproducibles 🤖 IA aplicada, agentes y Green Software 🏥 Datos biomédicos y salud pública 🌍 Datos geoespaciales y ciencias atmosféricas 📊 Investigación cualitativa/cienciometría 🐸 Biodiversidad/bioinformática rs-latam.org/programa.html
rs-latam.org
Programa – RSLA26
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Luis D. Verde Arregoitia @liomys.mx · 18/08/2026
Quedan lugares en los tutoriales de #RSLA26, Primera conferencia sobre Software de Investigación en Latinoamérica 🛠️ Temas: Git, HPC, Python, renv y LLMs en R. 💰 Cuotas simbólicas (desde US$7). 🔗 rs-latam.org/tutoriales.h... #RStats #CienciaAbierta
rs-latam.org
Tutoriales – RSLA26
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Simon P. Couch @simonpcouch.com · 17/08/2026
How do you choose an LLM? A survey of the current model landscape, including results from the vibes-from-Sara-and-Simon eval (/s) New on the @posit.co open source blog: opensource.posit.co/blog/2026-08...
opensource.posit.co
AI Newsletter: How to choose a model
Which model is 'best'? A survey of the current model landscape.
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Isabella Velásquez @ivelasq3.bsky.social · 22/07/2026
In **1 week**! The fabulous @libbyheeren.bsky.social and I are giving a guided tour to Positron for RStudio users 💻 Join us for a live walkthrough of this cool tool. 📅 30th July, 2026 ⏰ 11 AM AEST / 8 PM CDT 🔗 www.meetup.com/rladies-melb... 💜 Thanks for having us, @rladiesmelb.bsky.social!
meetup.com
Meet Positron: A Guided Tour for RStudio Users, Thu, Jul 30, 2026, 11:00 AM | Meetup
**Meet Positron: A Guided Tour for RStudio Users** **Date:** 30th July, 2026 **Time:** 11 AM **Where: [Online](https://deakin.zoom.us/j/87455019351?pwd=mvadykmUlN0OsEFj8Ir
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Florencia D’Andrea @florencia-dandrea.bsky.social · 20/07/2026
I converted part of my #RSE Argentina talk into a blog post. ✍ If you're a researcher who values #openscience and computational #reproducibility but has never considered how it might change with the adoption of #AI, this post can offer some hints! 🔍 florencia-dandrea.netlify.app/posts/2026-0...
florencia-dandrea.netlify.app
Challenges and potential for reproducible open science in the AI era – Florencia D’Andrea
This post covers three topics: AI and open science, reproducibility, and its impact on scientific practice. It assumes a basic level of AI knowledge and becomes more complex as the reading progresses....
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Reposted by Luis D. Verde Arregoitia
Christophe Dervieux @cderv.bsky.social · 30/06/2026
Good news for Europe: posit::conf's virtual pass now includes auto-subtitles in French, Spanish, Portuguese, German & Italian 🎉 Plus a virtual workshop on 9/14, multiple time slots, and recordings within hours — easy to catch afternoon US sessions next morning. Join us virtually!
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Research Software Alliance @researchsoftware.bsky.social · 30/06/2026
The IRSC26 program is live! www.researchsoft.org/irsc/program/ Keynotes by @rivaquiroga.bsky.social & Stefano Zacchiroli, BoFs, talks, lightning talks, plenary discussions & community reflections, and more! Join us 7–8 Sept 2026 in Sheffield, UK or online. #IRSC26 #ResearchSoftware
researchsoft.org
Research Software Alliance
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Aleksandra Lazić, PhD @alelazic.bsky.social · 13/06/2026
Me at work, every day. #RStats
Can I offer you a nice egg in this trying time? meme but "a nice egg" is struck through and replaced with "R".
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Tiffany Timbers @tiffanytimbers.bsky.social · 11/06/2026
Thrilled to share that @minecr.bsky.social and my paper on Ten simple rules for teaching data science is now available from @plos.org Computational Biology! journals.plos.org/ploscompbiol...
journals.plos.org
Ten simple rules for teaching data science
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Luis D. Verde Arregoitia @liomys.mx · 10/06/2026
📦 overlay was recently mentioned by @rfortherestofus.com, so I thought I'd share a recent example from teaching. Combining ggpath for background images in plots with overlay to add the code for the special legend - created with legendry #rstats
2D scatterplot with a photo of a highway for a background, with some of its underlying plotting code overlaid on top
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Reposted by Luis D. Verde Arregoitia
stdlib @stdlib.io · 08/06/2026
For years, open source communities relied on visible friction: people got stuck, asked questions in public, and became part of a community. AI is changing that. What happens when newcomers are no longer visible—and neither side knows the other is there? blog.stdlib.io/ai-and-the-i...
blog.stdlib.io
What We're No Longer Seeing: AI and the Invisible Newcomer in Open Source
How AI is absorbing the visible friction that open-source communities have always relied on to see—and welcome—newcomers.
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LatinR Conf @latinrconf.bsky.social · 07/06/2026
🌎 LatinR 2026 te espera en *cualquier disciplina*: ciencias sociales, salud, medio ambiente, educación, sector público, IA, paquetes… Si usás #RStats en lo tuyo, tu lugar está en Medellín 🇨🇴 📅 Cierre: 15 de junio. openreview.net/group?id=LAT...
Asistentes a LatinR 2023 en una escalera sonriendo muy felices con la conferencia. 11 al 13 de noviembre de 2026 en Medellin, Colombia. Universidad de Antioquia. 
latinr.org
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LatinR Conf @latinrconf.bsky.social · 08/06/2026
📚 Tip de envío: en #LatinR podés ser **autor/a principal de 1 trabajo** y **co-autor/a de hasta 2 más**. Pensá qué proyectos podés impulsar con tu equipo 👥 #RStats Universidad de Antioquia, Colombia. Cierre: 15 de junio. openreview.net/group?id=LAT...
Sede Universidad de Antioquia. Edificio vidriado de varios pisos con arboles y bancos en los caminos de acceso.
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Fabricio Villalobos @fabrovillalobos.bsky.social · 02/06/2026
Neat study led by @liomys.mx describing what we (don't) know about genetic data on Mexican mammals. Part of the Special Issue of Therya (Mexican Mammalogy Association) dedicated to the pioneering work of Livia León Paniagua
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Luis D. Verde Arregoitia @liomys.mx · 02/06/2026
New paper out with many cool collaborators: 🇲🇽 Overall, Mexican land mammals are genetically undersampled and a large % of existing samples lack spatial context, so what can we do to fix this? 🧬 💕 In a Special issue dedicated to Livia León Paniagua doi.org/10.12933/the...
doi.org
Status and shortfalls in the availability of genetic sequences and associated metadata for Mexican mammals
Genetic information represents an important dimension of biodiversity beyond species or ecosystems, and genetic sequences are essential for all themes in biodiversity research. Genetic data are not ex...
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LatinR Conf @latinrconf.bsky.social · 26/05/2026
📢 ¡Anunciamos nuestra primera keynote de #LatinR2026! 🤩 Nic Crane (@niccrane.bsky.social) nos acompañará en esta edición de #LatinR. 🥳 Nic mantiene el paquete Arrow en R, es parte del Apache Arrow PMC, contribuye a ellmer y es referente en el uso de #LLMs con #RStats. #RLadies #DataScience
Flyer promocional de LatinR 2026 con fondo violeta. En la parte superior izquierda se lee “KEYNOTE 2026” en letras grandes blancas. Debajo aparece una fotografía circular de Nic Crane sonriendo, con gafas rojas y fondo claro. A la derecha de la imagen se lee “NIC CRANE” y debajo “OPEN-SOURCE MAINTAINER AND INDEPENDENT R CONSULTANT”. En la parte inferior figura la fecha y lugar del evento: “11 AL 13 DE NOVIEMBRE DE 2026 - MEDELLÍN, COLOMBIA”. A la derecha del diseño aparece una columna vertical con el logo de LatinR y el sitio web “latinr.org”.
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LatinR Conf @latinrconf.bsky.social · 25/05/2026
We’re excited to announce the sponsors supporting #LatinR 2026! 🎉 A huge thank you to @rconsortium.bsky.social and @posit.co for helping make this community-driven event possible and for their continued support of the #RStats in Latin America 💙 Stay tuned for more updates about #LatinR2026
Horizontal flyer with a light gray background and a purple top banner. In the upper left corner, “SPONSORS 2026” appears in large white letters. On the right side, the LatinR logo appears alongside the text “Latin American Conference on the Use of R in Research + Development”. In the center of the flyer, the logos of R Consortium and Posit are displayed prominently over the gray background.
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Luis D. Verde Arregoitia @liomys.mx · 29/04/2026
📦 new #rstats package to overlay ggplot2 plots, gt tables, or code snippets onto images, with optional perspective warp and transparency. 🪄powered by magick luisdva.github.io/overlay/
Photo of a beach with some buildings, overlaid with a map and a table with weather averages for Dakar Senegal
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Luis D. Verde Arregoitia @liomys.mx · 04/05/2026
🐵 New paper out today 📄 How is hunting distributed across the primate phylogeny and how is this influencing extinction risk? International collaboration w/ @fabrovillalobos.bsky.social and many others doi.org/10.1111/acv....
doi.org
Phylogenetic Patterns in Hunting and Extinction Risk in Primates
Globally, hunting is a significant threat to non-human primates, potentially increasing their risk of extinction. Larger-bodied and more evolutionarily distinct species are at higher risk, although s...
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Luis D. Verde Arregoitia @liomys.mx · 23/05/2026
💻 RStudio addins now run in Positron through the command palette, including the addins from my annotater package (despite relying heavily on the rstudioapi pkg for modifying open files!) Nice! #rstats
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LatinR Conf @latinrconf.bsky.social · 21/05/2026
🌱LatinR es R en todos los campos: ecología, salud, encuestas, política pública, humanidades, educación, ML… Si usás R en lo tuyo, hay lugar para tu trabajo en Medellín 🇨🇴 🗓️ Cierre: 1 de junio 📍 openreview.net/group?id=LAT... 🌐 latinr.org/blog/es/2026... #LatinR2026 #RStats
People at LatinR coffee and mate break
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Vianey Leos Barajas @vianeylb.bsky.social · 07/05/2026
The International Statistical Ecology Conference is extending abstract submissions to May 29, 2026 (AoE). Want to encourage more folks in 🇲🇽 & LATAM to participate. Spread the word to your colleagues in Latin America. Happy to answer any questions about the conference! statisticalecology.org
statisticalecology.org
Home - ISEC 2027
The International Statistical Ecology Conference (ISEC) is the main international gathering of statistical ecologists. It is an inclusive interdisciplinary conference at the interface between statisti...
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Luis D. Verde Arregoitia @liomys.mx · 19/05/2026
Extendimos el envío de resúmenes para #RSLA26 I Conferencia internacional de software de investigación en Latinoamérica (virtual, agosto 2026) 🗓️ Nueva fecha límite: 31 de mayo 💻 Para todas las personas que desarrollan, utilizan, y sostienen software de investigación. rs-latam.org
rs-latam.org
RSLA26
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LatinR Conf @latinrconf.bsky.social · 18/05/2026
📢 The call for submissions for LatinR 2026 has been extended! There’s still time to share your projects, experiences, and work with the R community in Latin America 💜 🗓️ New deadline: June 1 ✍️ openreview.net/group?id=LAT... 🔗 latinr.org 📍 Medellín, Colombia #LatinR2026 #RStats
static.klipy.com
Dog 'Voting' on a Laptop
Alt: A dog writing on a laptop on a couch
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Fabricio Villalobos @fabrovillalobos.bsky.social · 19/05/2026
Which traits drive the impressive diversification of ray-finned fishes? @julianapez.bsky.social delved into this question, finding that 3 widely measured and potentially ecologically relevant fish traits don't seem to influence their diversification. Take a dive yourself 👇 tinyurl.com/ya67xuns
tinyurl.com
Body elongation, lateral shape, and body size do not show a consistent effect on diversification rates of ray-finned fishes at broad phylogenetic scale - Evolutionary Ecology
Species richness differences among lineages and habitats, as well as the variety of their traits, have led to the association of intrinsic and extrinsic traits of species with diversification rates. Certain traits may be relevant for all species within a large clade and may thus influence the diversification dynamics of the whole clade. Here, we used the most extensive molecular phylogeny and morphological dataset available for ray-finned fishes (Actinopterygii), to test the influence of three ecologically relevant and widely sampled morphological traits – body elongation (bel), body lateral shape (bls), and maximum body size (len) – on the diversification rates at this broad phylogenetic scale. We also included habitat type (freshwater/marine) as a trait that could interact with the morphological traits and influence diversification rates. We applied the SecSSE model of trait-dependent diversification based on discrete traits, which allows evaluating the effect of examined and concealed trait states on diversification. We complemented this analysis with the QuaSSE and ES-sim models based on continuous traits. Under SecSSE, our results do not provide evidence for an effect of the examined morphological traits or their interactions with habitat, on the diversification rates of Actinopterygii. Instead, these results suggest the possibility that other, unmeasured trait(s) may contribute to their diversification dynamics. However, this finding could be limited by the variation loss imposed by the discretization of continuous traits that could potentially mask biological signal. In contrast, QuaSSE recovered an effect of all traits on diversification, although with high Type I error rate, whereas ES-sim detected a significant negative relationship with diversification only for body elongation. Taken together, our results do not provide consistent support for an effect of the examined traits on diversification rates, highlighting the sensitivity of inferences to methodological assumptions and data structure. Our findings do not exclude the possibility that the examined traits may have clade-specific effects, influencing the diversification of particular lineages (e.g., orders or families) within the Actinopterygii.
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R Consortium @rconsortium.bsky.social · 19/05/2026
📢 The call for submissions for LatinR 2026 has been extended! There’s still time to share your projects, experiences, and work with the R community in Latin America 💜 🗓️ New deadline: June 1 🔗 latinr.org 💬 Official languages: Spanish, Portuguese, English 📍Medellín, Colombia #rstats
screenshot of LatinR main page
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Luca Santini @lsantinieco.bsky.social · 19/05/2026
What is the relationship between population density and home range? and what are the implications in terms of home range overlap? Our latest paper tackling these questions is finally out! nsojournals.onlinelibrary.wiley.com/doi/10.1002/... @giannijacca.bsky.social @marleetucker.bsky.social
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rOpenSci @handle.invalid · 18/05/2026
🎉 The #LatinR2026 call for proposals is open! The 9th edition will be held in person in Medellín, Colombia 🇨🇴, on November 11–13. You can participate with oral presentations, lightning talks or posters. 🚨 Submissions Deadline: June 1, 2026 All the info at: latinr.org/en #LatinR […]
hachyderm.io
Original post on hachyderm.io
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Laura Bertola @lauradbertola.bsky.social · 13/05/2026
Phylogenetic Patterns in Hunting and Extinction Risk in Primates zslpublications.onlinelibrary.wiley.com/doi/10.1111/...
zslpublications.onlinelibrary.wiley.com
Phylogenetic Patterns in Hunting and Extinction Risk in Primates
Globally, hunting is a significant threat to non-human primates, potentially increasing their risk of extinction. Larger-bodied and more evolutionarily distinct species are at higher risk, although s...
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rOpenSci @handle.invalid · 06/05/2026
🗒️ [blog] New Mentoring Team with Experienced Mentors and New Voices Meet the new team of mentors who will accompany our Champions in their projects for a year, sharing experience, guidance, and enthusiasm. ropensci.org/blog/2026/05/06/mentor… #RStats #Mentoring #RSE #FOSS
Profile pictures of the 11 members of the new mentoring team.
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James Pitt @sahelanth.bsky.social · 05/05/2026
I wanna thank @liomys.mx for saving me a lot of time when I had to work with messy data a lot. cran.r-project.org/web/packages...
cran.r-project.org
Introduction to unheadr
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Fabricio Villalobos @fabrovillalobos.bsky.social · 04/05/2026
Just out! Beyond the + link b/w hunting & body mass in non-human primates 🐒, closely related species share similar hunting risk with important regional diffs (e.g. American tropics vs Asia) suggesting diff cultural practices. Thanks @liomys.mx for the lead and the intl team for the collab 👇
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Luis D. Verde Arregoitia @liomys.mx · 04/05/2026
🐵 New paper out today 📄 How is hunting distributed across the primate phylogeny and how is this influencing extinction risk? International collaboration w/ @fabrovillalobos.bsky.social and many others doi.org/10.1111/acv....
doi.org
Phylogenetic Patterns in Hunting and Extinction Risk in Primates
Globally, hunting is a significant threat to non-human primates, potentially increasing their risk of extinction. Larger-bodied and more evolutionarily distinct species are at higher risk, although s...
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