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Cristian Mesquida

@crist14n.bsky.social
206 followers 229 following 23 posts

Postdoctoral researcher at Eindhoven University of Technology. Having a great time doing meta-research.

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Reposted by Cristian Mesquida
James Balamuta @coatless.bsky.social · 18h
webrarian is a new R package. It turns a folder of R scripts and data into a static website where R runs in the visitor's browser, with no compute server and nothing to install. blog.thecoatlessprofessor.com/posts/introd... #rstats #webr #webassembly
A card for the R package webrarian. Large text reads "A folder in. A website out." On the left, a small card lists a folder named lab-01 holding lab.R, setup.R and a data folder. A red arrow points from it to a browser window that shows a scatterplot of car weight against miles per gallon with brick-red points. The address coatless-wasm.github.io/webrarian is on the card.
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Richard Van Noorden @richvn.bsky.social · 02/10/2026
NEW: researchers say one 'zombie' study in Iran, 20 years ago, has skewed the world's medical evidence base for using Prozac to treat depression in children. They stop short of saying don't use Prozac this way, but want clinical guidelines revised. @nature.com www.nature.com/articles/d41...
nature.com
Prozac use for childhood depression skewed by single flawed medical trial
One small study in Iran swayed meta-analyses in favour of antidepressant use in children, researchers say.
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Lisa DeBruine @debruine.bsky.social · 25/09/2026
❇️ I've updated Data Skills for Reproducible Research to v6.1. The Iteration & Functions chapter has been split in two and I've added some material on unit testing. It's a living textbook, so please submit issues if you find a mistake or something unclear. psyteachr.github.io/reprores-v6/...
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The Cochrane Collaboration @cochrane.org · 24/09/2026
INSPECT-SR – a tool for assessing the trustworthiness of randomized controlled trials – has been published today in @bmj.com, giving researchers a structured way to identify problematic studies before they're included in systematic reviews. 🔗 www.cochrane.org/about-us/new... #ResearchIntegrity
“Systematic reviews are only as credible as the studies they include.” — phrased as a Cochrane senior research integrity editor; a magnifying glass rests on stacked papers in the background to emphasize careful scrutiny of research.
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Julia M. Rohrer @dingdingpeng.the100.ci · 23/09/2026
Just listened to this episode, it’s excellent! You can tell that Paul Allison is an *incredible* teacher. Highly recommended if you’re fixed-effects curious but are new to the party! quantitude.org/s8e03-paul-a...
quantitude.org
S8E03 Control Yourself: Fixed Effects Models with Paul Allison – Quantitude
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Open Science NL @opensciencenl.bsky.social · 23/09/2026
Open Science NL has opened the new Call for proposals ‘FAIR Research Outputs’. With this funding instrument (€1.4 million available), Open Science NL aims to encourage research outputs to be as open and FAIR as possible. Find out more: www.openscience.nl/en/news/firs...
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Reposted by Cristian Mesquida
Dan Quintana @dsquintana.bsky.social · 19/09/2026
I then ran these articles through the 'metacheck' R package, which extracted repo links. I retrieved OSF repo links from 670 papers. Then I got OSF download numbers via the OSF API, and in parallel, got citation numbers and altmetric data for all these papers.
A flow diagram tracking 1,611 empirical psychology articles from publication year (545 in 2015, 552 in 2020, 514 in 2025) to repository-link type: 785 link an OSF project, 85 link another platform, and 741 link no repository. Of those with an OSF link, download counts were retrieved for 670 and not retrieved for 115.
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Dan Quintana @dsquintana.bsky.social · 19/09/2026
New preprint! 🎉 I analysed 1660 papers from 4 psychology journals and found materials sharing went from 9% of papers in 2015 to 82% in 2025, and these materials *do* get downloaded — a median of 135 times each. BUT shared code is often hard to run. doi.org/10.31234/osf... Let's walk through it 🧵
Two-panel figure. Panel a is a flow diagram tracking 1,611 empirical psychology articles from publication year (545 in 2015, 552 in 2020, 514 in 2025) to repository-link type: 785 link an OSF project, 85 link another platform, and 741 link no repository. Of those with an OSF link, download counts were retrieved for 670 and not retrieved for 115. Panel b is a line chart of the share of empirical papers linking OSF across 2015, 2020 and 2025. The overall rate, shown as a dashed black line, rises from 9% to 57% to 82%. All four journals rise steeply and end close together: Psychological Science 92%, JESP 89%, JML 83%, Cognition 76%, with Psychological Science highest throughout.Three-panel figure. Panel a: ridgeline plot of downloads per file by material type on a log scale, with the percentage never downloaded labelled for each — archive 16% of 545 files, documents 20% of 2,970, code 12% of 3,471, other 17% of 1,646, data 21% of 10,051, media 35% of 2,120, images 35% of 4,102. Most files cluster between 1 and 10 downloads, with long right tails past 100. Panel b: ridgeline plot of downloads per paper by journal, log scale, with dashed median lines; Psychological Science is highest, then JESP, JML and Cognition. Panel c: stacked bars showing, for documents, data and code separately, the share of papers by download band (0, 1–10, 11–100, more than 100) in 2015, 2020 and 2025. The share exceeding 100 downloads falls sharply over time in all three types, from roughly two-thirds in 2015 to a quarter or less in 2025, as the 1–10 band grows.Four-panel figure. Panel a: statistical languages detected among 333 papers with retrievable code — R 88%, SPSS 12%, Stata 4%, SAS 1%. Panel b: code red flags among those 333 papers — 34% hard-code an absolute path, 40% reference a missing file — above documentation among 672 OSF-linked papers — 21% have a README, 30% are documented by README, description or wiki. Panel c: among 562 Elsevier papers with no repository link, 44% (245) host at least one journal supplementary file but only 14% (77) host data, code or an archive. Panel d: composition of those 448 hosted files — documents 52%, data 21%, media 9%, other 7%, archive 6%, code 3%, images 1%. The code panels are green, the journal-supplement panels blue.Coefficient plot (download predictors)

Dot-and-whisker plot of three standardised predictors of OSF download volume, each with a 95% confidence interval. Repository size (number of files) has the largest effect at about 0.76, citations about 0.38, and altmetric attention about 0.12. All three intervals sit entirely above zero, so each predicts more downloads, with repository size roughly twice the effect of citations and six times that of attention. X-axis: standardised effect, −0.2 to 1.0.
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Sajedeh Rasti @sajedehra.bsky.social · 14/09/2026
Only two weeks left to register for the third Meta Research Symposium at Paul Meehl Graduate School on October 8-9 A diverse and fun program is set for both days Check out the program and register here: paulmeehlschool.github.io/workshops/sy...
paulmeehlschool.github.io
Paul Meehl Graduate School Meta Research Symposium 2026 | Paul Meehl Graduate School
October 8-9, 2026
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The HPS Podcast @hpspodcast.bsky.social · 11/09/2026
"But on the night sky, it's like seeing an atom held at arm's length..." This week on the podcast, Peter Galison joins Sophie Ritson to discuss what it took to make the first image of the black hole — and what it means to say we saw it. linktr.ee/thehpspodcast
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Open Science NL @opensciencenl.bsky.social · 10/09/2026
Registered for the National Open Science Festival 2026? Workshop registration is now open! Choose from five rounds of interactive sessions. Places are limited and allocated on a first-come, first-served basis. Secure your spot: cbd.eventsair.com/nosf-2026/re...
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Caspar van Lissa 🟥 @cjvanlissa.bsky.social · 09/09/2026
`webexercises` creates interactive exercises for pkgdown, Rmarkdown, and with this update, Quarto (books), Latex output, and #R package vignettes! My hope is that this will support open educational materials, especially in R-package documentation. cran.r-project.org/web/packages...
cran.r-project.org
webexercises: Create Interactive Web Exercises
Functions for easily creating interactive web exercises in 'R Markdown', 'Quarto', and package vignettes that students can use in self-guided learning.
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Måns Thulin @mansthulin.bsky.social · 19/11/2024
Looking for a book that covers both statistics and R programming? Check out my book Modern Statistics with R! Coding, visualisation, regression, ML & more. 📖 Read it for free: www.modernstatisticswithr.com 📚 Get printed copies: tinyurl.com/mswrbook #Rstats #statistics #datascience #machinelearning
Modern Statistics with R - the author holding the book
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Vincent Arel-Bundock @vincentab.bsky.social · 04/09/2026
Big news! 🎉 𝚖𝚊𝚛𝚐𝚒𝚗𝚊𝚕𝚎𝚏𝚏𝚎𝚌𝚝𝚜 1.0.0 for #Rstats is out. It’s a big number and it feels like a big step. I wrote a blog on the challenges of interpreting statistical models, SPEED, cool new features, the future, and a 5 year package development and writing odyssey. arelbundock.com/posts/margin...
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Sajedeh Rasti @sajedehra.bsky.social · 25/08/2026
Join us on October 8–9 at TU Eindhoven for two days of metascience, including a hands-on workshop, hackathons, research presentations, and keynote talks 🔸️Free to attend, but registration is required. Check out the program and details here: paulmeehlschool.github.io/workshops/sy...
paulmeehlschool.github.io
Paul Meehl Graduate School Meta Research Symposium 2026 | Paul Meehl Graduate School
October 8-9, 2026
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Reposted by Cristian Mesquida
Daniel Lakens @lakens.bsky.social · 21/08/2026
If your journal performs manual reproducibility checks, and you are interested in comparing the performance of manual checks with the automated Reproducibility_Check module that I am developing for Metacheck (www.scienceverse.org/metacheck_bo..., does not use any AI) do reach out!
scienceverse.org
28  Reproducibility Check – The Metacheck Manual
A guide to Metacheck, an R package providing a module based tool for checking scientific manuscripts and data repositories for best practices using text search, R code, and optional LLM queries.
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Amanda Kay Montoya @akmontoya.bsky.social · 23/08/2026
New paper alert! "Mini-Many Analysts: Using Registered Reports to Learn About Analytical Flexibility" in Teaching of Psychology! Want to teach about #OpenScience in undergrad psychology classes? We propose a project that integrates #RegisteredReports and #ManyAnalysts! doi.org/10.1177/0098...
doi.org
Mini-Many Analysts: Using Registered Reports to Learn About Analytical Flexibility - Amanda Kay Montoya, Gareth Ong Yu, John Tawa, 2026
Introduction Analytical flexibility describes the multiple defensible analytic strategies researchers can use. Registered reports reduce analytical flexibility ...
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Ben Harrap @bharrap.bsky.social · 23/08/2026
🎉New tool for RevealJS slide theming🎉 You can play with: - background colours - base font size - colour and typeface for text and code - aspect ratio It displays contrast info, to help keep things accessible, and outputs the corresponding scss! benharrap.com/tools/quarto... #rstats #Quarto
A screenshot of a revealjs slide theme editor. An example slide is presented with several options to change colour schemes, typefaces, and font size
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Ryan Johnson @ryjohnson09.bsky.social · 21/08/2026
New Quarto extension: interactive Git exercises that run entirely in the browser. A real repo, real git commands, live diagrams of staging and history, a checklist that ticks itself off. Authored in Markdown and YAML, nothing to install. Demo: ryjohnson09.github.io/quarto-git-s...
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Peter Tennant @pwgtennant.bsky.social · 18/08/2026
In nutrition research, the effect you estimate from a model is determined by which other dietary variables you adjust for. If you adjust for total energy intake, the effect will switch from an addition to a substitution. Which substitution will be determined by which other variables are adjusted.
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Daniel Lakens @lakens.bsky.social · 15/08/2026
New Blog post: Which Data Repository Should you Use? In light of OSF closing down, I compare Zenodo, Dataverse, ResearchBox, PsychArchive, and local repositories on six important dimensions. If you want to know which to pick: It depends! daniellakens.blogspot.com/2026/08/whic...
daniellakens.blogspot.com
Which Data Repository Should You Use?
The Center for Open Science has announced that from November 16, 2026, no new projects can be created on the Open Science Framework. After F...
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Daniel Lakens @lakens.bsky.social · 14/08/2026
The Metacheck Shiny app to download all private OSF Repositories is done. The manual is updated, and everything is in the dev branch on GitHub. As a bonus, we explain how you can run repo_check, data_check, code_check, and codebook_check on your repository with 1 line of code. Launch next week.
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Ian Hussey @ianhussey.mmmdata.io · 14/08/2026
I’ve been told for years that it’s legally and ethically impossible to share medical RCT data. In 2024, the BMJ made sharing anonymised data mandatory, and now lots* of folk do it. Interesting how the barriers evaporated like that, isn’t it? *not everyone, compliance problems exist.
medrxiv.org
Availability of clinical trial individual patient data in the BMJ before and after adoption of a stringent data-sharing policy, compared with recent rates at other major medical journals
Background In 2024, the BMJ updated its data-sharing policy for clinical trials, requiring open deposit of deidentified individual participant data (IPD) before publication. We considered whether data...
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Daniel Lakens @lakens.bsky.social · 13/08/2026
My favorite Metascience conference will land in Copenhagen next year. The 9th (!) edition of the Perspectives on Science Error conference will be from January 27 to 29. Block your calendar, and see you there! errorsin.science
errorsin.science
Perspectives on Scientific Error 2027 · PSE9
Johanna Einsiedler, University of Copenhagen & University of Basel, johanna.einsiedler@sodas.ku.dk
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Russ Poldrack @russpoldrack.org · 11/08/2026
Many of you will have seen the recent post about changes at OSF. If you'd like to learn more about how to use other services (particularly Zenodo) to share data and code, see my book chapter on resource sharing. bettercode-book.org/book-sharing...
bettercode-book.org
12  Sharing Research Objects – Better Code, Better Science
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Emil Hvitfeldt @emilhvitfeldt.bsky.social · 06/08/2026
Another reminder that I'll be doing a 2 hour free online workshop about all things slidecrafting on August 12, 9:00 AM PDT! pos.it/slide-wrkshp #quarto #slidecrafting
pos.it
Slidecrafting Workshop with Emil Hvitfeldt
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Daniel Lakens @lakens.bsky.social · 03/08/2026
In the last 2 years I (and our lovely collaborators) have been rather obsessively working on Metacheck - a tool to automatically check best practices in papers. In this RIOTS summerschool talk, I walk you through what the tool can do, and future plans www.youtube.com/watch?v=OWd2...
youtube.com
Metacheck: automatically check papers for best practices - Daniel Lakens
Can automated tools help researchers catch problems before their work is published? In this talk from the King’s Open Research Summer School 2026, Professor Daniël Lakens (Eindhoven University of…
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Emil Hvitfeldt @emilhvitfeldt.bsky.social · 24/07/2026
I got double Data Science Lab news! firstly is that the recording for my last appearance is now on youtube! I'm also happy to announce that I will be joining the Data Science Lab again next week, we will be going over Quarto slide themes, pos.it/dslab youtu.be/vQbhFORULJc #quarto
youtu.be
Mind-Blowing Quarto Slide Extensions 💬 🖍️ 🤯 | Emil Hvitfeldt | Data Science Lab
The Data Science Lab is a live weekly call. Register at pos.it/dslab! Discord invites go out each week on lives calls. We'd love to have you! The Lab is an open, messy space for learning and asking…
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Francisco Rodriguez-Sanchez @frodsan.bsky.social · 24/07/2026
Nice! Self-contained reproducible #Rstats scripts or #Quarto documents Specify versions (or date) for R and R packages directly in the script or document
ir makes the runtime specification part of the source file. That means a script can say, directly:

    which packages it needs
    which R should run it, when that needs to be explicit
    whether user libraries should be visible
    whether CRAN packages should be resolved as of a specific date

This should help you rerun the script reliably at a later date. Keeping the metadata in the file makes it less likely to be lost or fall out of sync with the code.Quarto documents too#

ir uses the same metadata model for Quarto documents. Put package metadata under an ir: key in the document YAML:

---
title: My report
ir:
  packages:
    - dplyr>=1.0
    - gt@1.0
  isolated: true
  exclude-newer: 2025-05-15
---

Then render with:

$ ir render report.qmd
$ ir render report.qmd --to pdf

When ir selects an R executable using --r-version, frontmatter ir.r-version, or date-only exclude-newer, it sets QUARTO_R so Quarto renders with that R. ir also seeds rmarkdown automatically for knitr-based renders unless you declare it yourself.
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Daniel Lakens @lakens.bsky.social · 15/07/2026
We are hiring an assistant professor in Metascience! Join our lovely department of Human-Technology Interaction, with a very active Metascience group, at Eindhoven University of Technology. Apply here before August 14, or share the vacancy in your network! www.tue.nl/en/working-a...
tue.nl
Assistant Professor in Metascience
Personal type: Scientific staff
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Darren Dahly @statsepi.bsky.social · 14/07/2026
🤩 bingkaiwang.github.io/RCT_Bench-ma...
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Felienne Hermans @felienne.bsky.social · 01/07/2026
Podcast alert!!!! Together with Hanna Schraffenberger I am launching the Computer Science Off Course Podcast Today! Computer Science curricula are very very narrow in scope with a lot of math and algorithms, but very little meta science, philosophy or history.
A laptop screen showing our new podcast Computer Science Off Course on rss.com
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Daniel Lakens @lakens.bsky.social · 17/06/2026
Our new paper, Rethinking Type S and M Errors, is out. We argue that these statistics do not facilitate the proper design of studies or the meaningful interpretation of results.  doi.org/10.1177/2515...
journals.sagepub.com
Sage Journals: Discover world-class research
Subscription and open access journals from Sage, the world's leading independent academic publisher.
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Emil Hvitfeldt @emilhvitfeldt.bsky.social · 04/06/2026
I'm back with a hackathon demo driven quarto extension! Fun animated checklists in revealjs slides through fragments github.com/EmilHvitfeld... #quarto #slidecrafting
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Constantin Späth @cspaeth.bsky.social · 04/06/2026
New Paper (open access): www.sciencedirect.com/science/arti...
sciencedirect.com
From arbitrary metrics to meaningful change: Empirical smallest effect sizes of interest for the Feeling Scale during exercise
Research addressing changes in affective valence during exercise is often difficult to interpret because such changes are typically expressed on arbit…
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Jamie Cummins @jamiecummins.bsky.social · 27/05/2026
I will be speaking at this super interesting conference - sign-up and join us in Eindhoven!
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Michèle Nuijten @michelenuijten.bsky.social · 27/05/2026
Sign up here: meta-eindhoven.github.io/events/ @crist14n.bsky.social @lakens.bsky.social @vlastasikimic.bsky.social
meta-eindhoven.github.io
META/e
Conference ## META/e Conference on Transparency, Technology and AI in Peer Review **Location: De Zwarte Doos, Eindhoven University of Technology, 5 June 2026** This conference focuses on the use of te...
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Michèle Nuijten @michelenuijten.bsky.social · 27/05/2026
Should automated tools for peer review come with a "nutritional label" for validity?🥪 And if so, what should be on it? Join my workshop on June 5th @ the META/e Conference on Transparency, Technology and AI in Peer Review in Eindhoven! Results will inform our FAIR validation framework. Details >>
A table with the same layout as a nutritional label, but instead filled out with Validation Facts. Categories include tool information, ground truth, performance, and limitations & generalizability.
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Cristian Mesquida @crist14n.bsky.social · 26/05/2026
Are you interested in how technology and AI are reshaping peer review and grant evaluation? You can still register for the conference Transparency, Technology & AI in Peer Review at TU/e on June 5.
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Triad sou. @triadsou.bsky.social · 11/05/2026
Covariate adjustment in randomized clinical trials: From general theory to practical insights. Marlena S. Bannick, Yanyao Yi, Ting Ye. Clinical Trials. journals.sagepub.com/doi/abs/10.1...
journals.sagepub.com
Sage Journals: Discover world-class research
Subscription and open access journals from Sage, the world's leading independent academic publisher.
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Angelika Stefan @ephemeralidea.bsky.social · 08/05/2026
The advantage of Open Educational Resources? Students can still access them when Canvas is down! 😎 #OpenScience #EduSky
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James Bartlett @bartlettje.bsky.social · 07/05/2026
🚨 New article klaxon 🚨 Gaby Mahrholz, @emilynordmann.bsky.social and I have our article "Practice What You Preach: Designing Student Assignments That Advance Open and Reproducible Science" published in AMPPS. doi.org/10.1177/2515...
doi.org
Practice What You Preach: Designing Student Assignments That Advance Open and Reproducible Science - James Bartlett, Gaby Mahrholz, Emily Nordmann, 2026
Since the replication crisis came to widespread attention in psychology, there has been significant progress in reforming research practices to be more open and...
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JsonGeller @jgeller1phd.bsky.social · 07/05/2026
I think @debruine.bsky.social has convinced me to use github.com/scienceverse.... Looks awesome!
github.com
GitHub - scienceverse/metacheck: Check Research Outputs for Best Practices
Check Research Outputs for Best Practices. Contribute to scienceverse/metacheck development by creating an account on GitHub.
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Edward R. Ivimey-Cook @eivimeycook.bsky.social · 06/05/2026
Introducing * READMEBuilder * A shiny app that helps users build a high quality README to upload along with their data and code. Just install the package and run the build_readme() function to launch the app! github.com/EIvimeyCook/... Comments and suggestions welcome!
github.com
GitHub - EIvimeyCook/READMEBuilder: Shiny application that walks researchers through building a high-quality README file for research datasets and code. Automatically describes tabular data co...
Shiny application that walks researchers through building a high-quality README file for research datasets and code. Automatically describes tabular data columns (ranges, levels, NAs), det...
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Sajedeh Rasti @sajedehra.bsky.social · 06/05/2026
We still have few spots left for the upcoming workshop at PMGS, Theoretical Agent-Based Models. @matteomichelini.bsky.social will cover how to use ABMs for theory building and exploratory testing. Read more and register here: paulmeehlschool.github.io/workshops/ag...
paulmeehlschool.github.io
Theoretical Agent-Based Models | Paul Meehl Graduate School
May 27, 2026
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Psicostat @psicostat.bsky.social · 06/05/2026
📢 FAIR in practice: hands on the Data Management Plan 🗓 21 maggio | 14:00–19:30 📍 Psico 2, Università di Padova Un pomeriggio pratico su gestione FAIR dei dati e Open Science con aperitivo finale 🥂 Iscrizione gratuita: docs.google.com/forms/d/e/1F... #OpenScience #FAIR #DataManagement #Unipd
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Eslam Maher @eslammaher.bsky.social · 06/05/2026
A review from Stuart Pocock on covariate adjustment in randomized trials journals.sagepub.com/doi/10.1177/...
journals.sagepub.com
Covariate adjustment in randomized trials: An overview - Stuart J Pocock, 2026
This article aims to provide a practical overview of the various methods of covariate adjustment in randomized clinical trials leading to recommendation for fut...
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Peter Tennant @pwgtennant.bsky.social · 30/04/2026
Today is another day where weak science published in 'top' journals makes the headlines. Take this 'tool' to identify people at risk of obesity-related disease, published in @natmed.nature.com. I would be shocked and concerned if this tool is ever used! www.theguardian.com/society/2026...
theguardian.com
UK researchers develop tool to identify people most at risk of obesity-related diseases
Data tool could help NHS prioritise who gets access to limited weight-loss medication, say scientists
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Lisa DeBruine @debruine.bsky.social · 27/04/2026
The tools in Metacheck will be able to help with menial tasks like this. Read in PDFs and automatically check for matching entries in CrossRef. www.scienceverse.org/metacheck/
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Chris Chavez @chrischavez.bsky.social · 26/04/2026
OMG. 🇰🇪 Sabastian Sawe becomes the first man ever to break 2 hours in a marathon (legal conditions) in 1:59:30 at the London Marathon! Yomif Kejelcha 🇪🇹 runs 1:59:41 in his DEBUT. Jacob Kiplimo 🇺🇬 takes third in 2:00:28 All under the previous WR.
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