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Johannes Bohacek

@bohaceklab.bsky.social
782 followers 318 following 86 posts

Dad. Associate Professor @ ETH Zurich. We study stress, behavior, hippocampus, noradrenaline and the mighty locus coeruleus. We work with mice and focus a lot on 3Rs. Currently active only on LinkedIn.

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Reposted by Johannes Bohacek
Pierre-Luc Germain @plger.bsky.social · 23/06/2026
On biorxiv: doi.org/10.64898/202... Code & data are fully open, and you can browse the predictions live on www.ethz-ins.org/TFBPlatform . Most of this massive work was done by (recently Dr.!) Emanuel Sonder (ETH Zürich & UZH), co-supervised with Mark Robinson (UZH).
doi.org
Large-scale prediction of transcription factor binding across human cell types informs regulatory genomics and reveals promiscuous occupancy associated with chromatin contacts
Our understanding of the mechanisms regulating gene expression has been hampered by our limited knowledge of which transcription factors (TFs) bind where in the genome, which is highly cell type-speci...
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Johannes Bohacek @bohaceklab.bsky.social · 23/06/2026
Interested in mapping transcription factors in your -omic datasets? There's a crazy new resource you don't want to miss!
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Johannes Bohacek @bohaceklab.bsky.social · 05/03/2026
🚨New paper alert🚨 We built a fully standardized, integrated hardware and software solution for real-time welfare monitoring in mice. We used it to look at pain management after brain surgery. Not much has changed from the preprint (see below). Brief: hold back on opioids! doi.org/10.1038/s416...
doi.org
GrimACE: automated, multimodal cage-side assessment of pain and well-being in mice - Lab Animal
The authors present the GrimACE, an automated cage-side system that uses computer vision to score mouse pain and behavior. The tool, which detects postsurgery pain and analgesic effects, enables repea...
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Reposted by Johannes Bohacek
Peter Rupprecht @ptrrupprecht.bsky.social · 19/01/2026
Excited to share our new preprint! We explore the link between the locus coeruleus (LC) and arousal for astrocytes, pyramidal cells, interneurons in the hippocampus. A fantastic collaboration with @sianduss.bsky.social @bohaceklab.bsky.social, and many others: www.biorxiv.org/content/10.6... 1/5
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Johannes Bohacek @bohaceklab.bsky.social · 19/01/2026
🔵 for all the locus coeruleus lovers: check out our latest work! www.biorxiv.org/content/10.6... 🧵👇
biorxiv.org
Locus coeruleus noradrenaline elicits response profiles distinct from natural arousal in hippocampal neurons and astrocytes
During arousal and stress, the locus coeruleus (LC) releases noradrenaline (NA) throughout the brain, including hippocampus. It remains, however, unclear how LC activity contributes to the cellular response profiles observed during natural arousal. Here we directly compared effects of natural arousal and isolated LC activation in mouse CA1 using physiologically titrated optogenetics, combined with fiber photometry of NA and calcium signals, chronic two-photon imaging, and behavioral monitoring. We found that natural arousal robustly activated all three major cell types - astrocytes, pyramidal cells, and inhibitory interneurons - on a population level. In contrast, stimulation of the LC alone exerted a slow inhibitory influence on pyramidal cells and interneurons, with only a subset of interneurons exhibiting a transient activation by LC stimulation. Interneurons, but not pyramidal cells, segregated into functionally consistent LC-responsive subpopulations (activated vs inhibited) with distinct laminar positions in CA1. However, these LC-responsive subpopulations of interneurons did not reliably map onto response subpopulations defined by activity patterns during natural arousal. Astrocytes were strongly activated by both natural arousal and LC stimulation. However, single-cell responses of astrocytes to LC stimulation only partially aligned with their activity during natural arousal responses, indicating distinct driving forces across the two conditions. Together, these results show that LC-driven NA release produces distinct, cell-specific effects that do not align with hippocampal dynamics during natural arousal. Thus, our findings highlight the need to rethink how the locus coeruleus influences the main hippocampal cell types in vivo. ### Competing Interest Statement The authors have declared no competing interest. ETH Zurich, ETH-20 19-1 Swiss National Science Foundation, 310030_172889, 310030_204372, 310030B_170269, PZ00P3_209114 Botnar Research Center for Child Health Swiss 3R Competence Center Roche (Switzerland), https://ror.org/00by1q217 Hochschulmedizin Zürich Flagship project STRESS European Research Council, 670757
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Johannes Bohacek @bohaceklab.bsky.social · 15/01/2026
I just registered for - exciting!!! The "stress meetings" (alternating between North America and Europe) are my favorites in the conference cycle. #stress2026
media.tenor.com
a man in a vest is dancing in a living room with a couch and chairs
ALT: a man in a vest is dancing in a living room with a couch and chairs
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Johannes Bohacek @bohaceklab.bsky.social · 14/01/2026
Weltschmerz From my collection of powerful (and timely) German words. Literally: World pain. It refers to the suffering and pain one feels because of the state of the world and its inadequacy in relation to one's own desires and expectations.
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Johannes Bohacek @bohaceklab.bsky.social · 14/01/2026
American colleagues: who of you uses LinkedIn for posting papers and preprints, to chat about research findings and stir the occasional controversy? In Europe LinkedIn seems to gain popularity amongst researchers, I just find it really sterile and all the posts too polished. Opinions?
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Reposted by Johannes Bohacek
Richard Sever @richardsever.bsky.social · 12/01/2026
Preprints of pandemic potential - new historical piece from me on the history of bioRxiv/medRxiv, their role in the pandemic, and the way forward. 1/n journals.asm.org/doi/10.1128/...
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Johannes Bohacek @bohaceklab.bsky.social · 12/01/2026
Day 7: A classic. (the 3 people following this have now realized that there are long delays between my days...)
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Johannes Bohacek @bohaceklab.bsky.social · 08/01/2026
Day 6 of sharing gems from my personal cartoon collection. Share yours and make my day. I like this one since I did my undergrad in psychology. And I'm Austrian, Sigmund Freud and all that stuff.
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Johannes Bohacek @bohaceklab.bsky.social · 07/01/2026
I can't use twitter/X anymore, it's become an awful and useless place. On this site here, I don't feel like I'm reaching the same colleagues I used to reach on twitter. Someone just told me the action is on LinkedIn now. Really, LinkedIn!? Can I get some opinions on this? Are some of you there?
media.tenor.com
an ad for jolt shows a linkedin logo in the clouds
ALT: an ad for jolt shows a linkedin logo in the clouds
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Reposted by Johannes Bohacek
Yttri Lab @yttrilab.bsky.social · 07/01/2026
Hot off the @nature.com press!! Our A-SOiD behavior library developed specifically for pain to quantify a new chemogenetic gene therapy that targets opioid circuit in ACC without addictive properties @flybottleescape.bsky.social @cmu-neuroscience.bsky.social @cmu.edu www.nature.com/articles/s41...
nature.com
Mimicking opioid analgesia in cortical pain circuits - Nature
The anterior cingulate cortex encodes affective pain behaviours modulated by opioids; targeting opioid-sensitive neurons through a new chemogenetic gene therapy replicates the analgesic effects of mor...
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Johannes Bohacek @bohaceklab.bsky.social · 05/01/2026
How does your favorite gene respond to stress? Check out our updated “Stressome-app”! In a new @natcomms.nature.com paper we vastly extend our interactive app with loads of bulk and single-cell transcriptomics after acute and chronic stress. www.nature.com/articles/s41... I'll walk you through👇
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Reposted by Johannes Bohacek
Marija Kundakovic @kundakoviclab.bsky.social · 04/01/2026
Extremely excited & proud to share our new preprint - we provide for the first time a single cell map of the mouse brain across sex, the estrous cycle, and peripartum! Data are 🔥 👇 "Single-cell map of the female brain across reproductive transitions" www.biorxiv.org/content/10.6...
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Johannes Bohacek @bohaceklab.bsky.social · 05/01/2026
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Johannes Bohacek @bohaceklab.bsky.social · 28/12/2025
Day 5
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Johannes Bohacek @bohaceklab.bsky.social · 26/12/2025
Day 4 of sharing my favorite cartoons. I forget who, but someone showed this at a talk on startle behavior in mice and for some weird reason I have to laugh every time I see it.
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Johannes Bohacek @bohaceklab.bsky.social · 25/12/2025
uff...
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Johannes Bohacek @bohaceklab.bsky.social · 25/12/2025
Day 3 - the best science cartoon. If you have a better one, please share.
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Johannes Bohacek @bohaceklab.bsky.social · 24/12/2025
Day 2 from my cartoon collection. I don't know what it says about me that I find this so funny.
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Johannes Bohacek @bohaceklab.bsky.social · 23/12/2025
The world can feel heavy these days, and holidays aren’t easy for everyone. I’ll share one cartoon from my personal collection every day to lighten things up (and to re-activate myself on this medium). Join me, post a cartoon that makes you laugh!
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Johannes Bohacek @bohaceklab.bsky.social · 23/12/2025
@bejalab.bsky.social I watched spinal tap 1+2 back-to-back the last two days. I was laughing so much. Thanks for having this image as your icon 😍
media.tenor.com
a man with long hair and a beard is saying it 's a morale builder isn 't it
ALT: a man with long hair and a beard is saying it 's a morale builder isn 't it
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Johannes Bohacek @bohaceklab.bsky.social · 22/12/2025
After an intense journal-club class, I've decided that this is my favorite neuroscience paper of 2025: www.cell.com/cell/fulltex... Although we have evidence that this mechanism doesn't exist in the hippocampus, it's an incredible tour-de-force. Overall, the habenula field was dominant this year.
cell.com
Neuron-astrocyte coupling in lateral habenula mediates depressive-like behaviors
Stress-induced depression-like behaviors are driven by a dynamic recurrent network involving neurons and astrocytes in the lateral habenula and norepinephrine release from neurons in the locus coerule...
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Johannes Bohacek @bohaceklab.bsky.social · 15/12/2025
I'm back from social media DETOX. 5 months... what did I miss?
media.tenor.com
a man wearing a gas mask and a leather jacket is standing in front of a wooden building
ALT: a man wearing a gas mask and a leather jacket is standing in front of a wooden building
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Johannes Bohacek @bohaceklab.bsky.social · 17/09/2025
🔵 I'm interrupting my social media hiatus to flag this important preprint from the Bruchas lab (is he not on Bluesky!?) together with @davidweinshenker.bsky.social. Very difficult experiments to show that dopamine release from LC terminals is independent of VTA 🔥 www.biorxiv.org/content/10.1...
biorxiv.org
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Johannes Bohacek @bohaceklab.bsky.social · 27/06/2025
This preprint has been under review >110 days... I think they can't find reviewers. WOULD YOU BE WILLING TO SERVE AS A REVIEWER? If you're keen, I'd propose your name to the editor... Please re-post
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Johannes Bohacek @bohaceklab.bsky.social · 18/06/2025
I'd have so much to complain about these days. But given the state of affairs in the world, it feels inappropriate to whine about daily hassles. So let me just say this on behalf of everyone who is struggling but otherwise safe: fucking hell.
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Johannes Bohacek @bohaceklab.bsky.social · 09/04/2025
🔵 Interesting new work from @davidweinshenker.bsky.social on why locus coeruleus neurons might be vulnerable to degeneration in humans (Alzheimer's) but not in mice. And a new approach on how this could be modelled in mice through human tyrosinase overexpression: www.biorxiv.org/content/10.1...
biorxiv.org
Tyrosinase-induced neuromelanin accumulation triggers rapid dysregulation and degeneration of the mouse locus coeruleus
The locus coeruleus (LC), the major source of norepinephrine (NE) in the brain, is among the earliest site of pathology in both Alzheimers disease (AD) and Parkinsons disease (PD), and it undergoes ca...
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Johannes Bohacek @bohaceklab.bsky.social · 17/03/2025
Impression from the evening panel discussion at #ESC2025. Amazing talks today, wonderfully open and fun atmosphere. After all these years, still my favorite meeting in the conference cycle ❤️
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Reposted by Johannes Bohacek
Drew Schreiner @schreinerdrew.bsky.social · 17/03/2025
Dopamine and acetylcholine interactions - so hot right now! Tour de force work from Steph Cragg's group out in NN (lead Yan-Feng Zhang). They find Cholinergic Interneurons (ChIs) largely suppress DA release, distinct from what we just reported in songbirds (1/x) www.nature.com/articles/s41...
media.tenor.com
a group of people sitting in a theater with the words so hot right now written on the bottom
ALT: a group of people sitting in a theater with the words so hot right now written on the bottom
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Johannes Bohacek @bohaceklab.bsky.social · 16/03/2025
Stellar women-only (💪) panel on stress and development, loaded with cutting-edge multiomic data kicking off the European Stress Conference #ESC2025 in Innsbruck, Austria
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Reposted by Johannes Bohacek
Marija Kundakovic @kundakoviclab.bsky.social · 11/03/2025
My lab is hiring 2 postdocs on an NIH-funded grant characterizing molecular & cellular changes in the human brain across menopausal transition. Other neuroepigenomics projects are also available. We plan to hire a wet lab scientist and a bioinformatician. Please RT! kundakoviclab.com More info 👇
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Johannes Bohacek @bohaceklab.bsky.social · 11/03/2025
How much analgesia is needed to manage pain levels in mice after brain surgeries? A single dose of meloxicam seems to be enough. Even the addition of opioids cannot provide a clear benefit. (in line with recent work from others, see cites in our preprint): www.biorxiv.org/content/10.1...
biorxiv.org
GrimACE: Automated, multimodal cage-side assessment of pain and well-being in mice
Pain and welfare monitoring is essential for ethical animal testing, but current cage-side assessments are qualitative and subjective. Here we present the GrimACE, the first fully standardised and aut...
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Johannes Bohacek @bohaceklab.bsky.social · 06/03/2025
I’m trilled to release the largest amount of stress profiling data from our (I think any) lab so far. We asked how the molecular response to acute stress adapts as the stressor becomes chronic. Multiomic profiling in the mouse hippocampus, led by Rebecca Waag and co-last author Pierre-Luc Germain 💪
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Johannes Bohacek @bohaceklab.bsky.social · 04/03/2025
Uuuhh... DANNCE is back! Now social-DANNCE. Looks very cool, taking multi-animal tracking and analysis of social behavior to a whole new level. Just the green-room multiple-camera setup looks quite complex, I wonder how easy this can be replicated in other labs. Will certainly spark excitement!
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Reposted by Johannes Bohacek
KalischLab @kalischlab.bsky.social · 04/12/2024
SAVE THE DATE: #resilience2025 - the 11th International Symposium on Resilience Research - Mainz, Germany - September 24-26, 2025 Satellite methods workshop: September 23 & many opportunities for early-career researchers Meet the stress resilience research community, get latest insights, spur you
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Johannes Bohacek @bohaceklab.bsky.social · 04/03/2025
Is this still the place to post scientific updates about papers, preprints and cool new data? Asking for a friend.
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Nikola Grujic @neuro-nik.bsky.social · 02/03/2025
Amazing work from our colleagues at ETH/UZH answering many unknowns about arousal during sleep. And congrats to their participants for being able to sleep with their eyes taped open! www.nature.com/articles/s41...
nature.com
Pupil size reveals arousal level fluctuations in human sleep - Nature Communications
Arousal levels regulate sleep, but accurate noninvasive measures are lacking. Here, a novel method is introduced to track pupil-indexed arousal levels during human sleep, revealing pupil size changes ...
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Johannes Bohacek @bohaceklab.bsky.social · 17/02/2025
First day of the new semester. 5th time I'm teaching this class. Got tenured along the way. And still, I'm nervous before going in... 😅🤷‍♂️
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Reposted by Johannes Bohacek
mark cembrowski @markcembrowski.bsky.social · 13/02/2025
delighted to share our work revealing a new type of excitatory hippocampal neuron we call the "ovoid cell", which has really exquisite properties relative to adjacent pyramidal cells! superb work of first-author @adriennekinman.bsky.social and many others in the lab www.nature.com/articles/s41...
nature.com
Atypical hippocampal excitatory neurons express and govern object memory - Nature Communications
Pyramidal cells are classically thought to comprise the excitatory output of the subiculum. Here, the authors show the existence of “ovoid cells”, excitatory subiculum neurons with specialized gene ex...
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Johannes Bohacek @bohaceklab.bsky.social · 12/02/2025
Check out this cool study by the @markcembrowski.bsky.social lab! They describe a new hippocampus cell population that responds to novel stimuli. But hold on to your seat: they don't if the object is presented again. Even 100 days later! When the behavioral memory has long faded!! 🤯🤯😱🤩
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Johannes Bohacek @bohaceklab.bsky.social · 12/02/2025
Huh... tumors can have excitable neuron-like cells. And the other tumor cells support them metabolically, akin to the neuron-astrocyte relationship. 🤯
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Johannes Bohacek @bohaceklab.bsky.social · 06/02/2025
This quote is the reward of agreeing to review a PhD thesis on very short notice. I had exactly the same experience, I just couldn't have phrased it so well. #Psychedelics
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Johannes Bohacek @bohaceklab.bsky.social · 21/01/2025
It's that time of year, I'm updating my lectures and I have weird questions. BACKGROUND: I've used this graph for many years to joke that sex is more stressful than anything else (and to make the more serious point that CORT levels are a poor readout for stress). ars.els-cdn.com/content/imag...
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davidweinshenker.bsky.social @davidweinshenker.bsky.social · 13/01/2025
For LC researchers on BlueSpot Slack but haven't checked it, @mikekelberman.bsky.social and Ellen Rodberg will present their work on LC ephys tomorrow at 11 am EST. Link on General channel. If you are not on BlueSpot and want to attend, email me dweinsh@emory.edu. www.biorxiv.org/content/10.1...
biorxiv.org
Diversity of ancestral brainstem noradrenergic neurons across species and multiple biological factors
The brainstem region, locus coeruleus (LC), has been remarkably conserved across vertebrates. Evolution has woven the LC into wide-ranging neural circuits that influence functions as broad as autonomi...
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Johannes Bohacek @bohaceklab.bsky.social · 09/01/2025
🔵 #LocusCoeruleus alert! Holy cow... I'm supposed to do something else, but this paper looks amazing! I mean the concept, the implications... wow. www.cell.com/cell/fulltex...
cell.com
Norepinephrine-mediated slow vasomotion drives glymphatic clearance during sleep
Norepinephrine oscillations during NREM sleep drive synchronized changes in cerebral blood volume and cerebrospinal fluid, promoting glymphatic clearance. Optogenetic and pharmacological manipulations confirm that vasomotion, regulated by norepinephrine, acts as a pump for brain fluid transport.
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Carmen Sandi @carmensandi10.bsky.social · 09/01/2025
Join us on Feb 17 in Bern to celebrate the outstanding contributions of Prof. Jim McGaugh, winner of GSRNet Award 2025! Exciting program: talks by Puder, Adamantidis, Tzanoulinou, Ruff, Andreas Luthi & roundtable with @bohaceklab.bsky.social B Kleim & von Känel www.stressnetwork.ch/events/7th-a...
stressnetwork.ch
7th Annual Meeting in Bern
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Reposted by Johannes Bohacek
Mackenzie Weygandt Mathis @trackingactions.bsky.social · 20/12/2024
What a year! #DLC3🔥 is up tested by many of you (👀 watch out for a paper in 2025), we hit 750K downloads, and have over 120 contributors to the code! @deeplabcut.bsky.social ❄️⛷just dropped: new human pose models & high perf. models!
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Oded Rechavi @odedrechavi.bsky.social · 05/12/2024
Scared to share this after 10 freaking years of waiting, but here we go: We found that temperature *perception* can change the biology of the next generations, even when “it’s just in the parents' head”. Read how C. elegans neurons control epigenetic inheritance! www.biorxiv.org/content/10.1...
biorxiv.org
Perception of Temperature Even in the Absence of Actual Change is Sufficient to Drive Transgenerational Epigenetic Inheritance
Can processes occurring in one individuals nervous system influence the physiology of the descendants? Here we explored the provocative hypothesis that parents sensation or perception of environmental...
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