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VastDB

@vastdb.bsky.social
39 followers 22 following 1 posts

VastDB is a repository of quantitative profiles of alternative splicing events and GE data across different tissues and species. Developed at @CRGenomica. Website: t.co/gOCIXBbxcO

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tahneema.bsky.social @tahneema.bsky.social · 28/06/2026
Very excited to finally share my PhD! 🎉 Our paper, “Neuronal microexons modulate arousal via the cAMP-PKA-CREB pathway in zebrafish,” is now published in Science Advances. Many thanks to all of my co-authors, and especially to @mirimiam.bsky.social! 📄 www.science.org/doi/10.1126/...
science.org
Neuronal microexons modulate arousal via the cAMP-PKA-CREB pathway in zebrafish
Loss of the conserved splicing factor for neuronal microexons disrupts neuromodulatory signaling and drives hyperarousal.
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Manuel Irimia @mirimiam.bsky.social · 02/03/2026
🚨🧬🚨 We're looking for a specialized Research Assistant to spearhead a project aimed at exploring new RNA therapeutics in diabetes and other metabolic disorders. Junior or Senior, we're hoping to recruit a highly motivated and self-driven scientist interested in both basic and applied science. 🦄
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EvoMG Program @evomg-bcn.bsky.social · 05/11/2025
Today we had a great EvoMG Seminar by Dario Valenzano @dvalenzano.bsky.social from FLI, who told us about some of their recent aging work using the fascinating short-lived killifish. Hosted by @mirimiam.bsky.social evomedgenomics.com/events/exter...
Dario Valenzano at PRBB
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Manuel Irimia @mirimiam.bsky.social · 22/09/2025
Last days to apply! Cool project, cool cities! :-) (Please repost! 🙏)
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 24/09/2025
Happy to share the Biodiversity Cell Atlas white paper, out today in @nature.com. We look at the possibilities, challenges, and potential impacts of molecularly mapping cells across the tree of life. www.nature.com/articles/s41...
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Manuel Irimia @mirimiam.bsky.social · 01/09/2025
🚨🚨🚨 New review article on #microexons from the lab! A comprehensive recap of the current state of the field by @tahneema.bsky.social. www.annualreviews.org/content/jour...
Network plot with microexon-associated phenotypes (nodes shown in dark gray). Microexon nodes are colored by exon length, and node size represents the level of conservation to the LCA as given in VastDB (109): human specific, Euarchontoglires (conserved from human to mouse and/or rat), Eutheria (to cow), Amniota (to chicken), Euteleostomi (to zebrafish), and Bilateria (to fruit fly).
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Manuel Irimia @mirimiam.bsky.social · 23/07/2025
🚨🚨🚨 Please RT! We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets. Deadline: 30/09/25👇
upf.edu
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VastDB @vastdb.bsky.social · 19/06/2025
www.embopress.org/doi/full/10....
embopress.org
Cotyledon opening during seedling deetiolation is determined by ABA-mediated splicing regulation | EMBO reports
imageimageAbscisic acid (ABA) prevents cotyledon opening in the dark by modulating splicing through serine/arginine-rich (SR) proteins RS40 and RS41. Light reduces ABA levels, releasing this repressio...
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Manuel Irimia @mirimiam.bsky.social · 18/03/2025
"The main fates after gene duplication are gene loss, redundancy, subfunctionalization and neofunctionalization". In our new review, @fedemantica.bsky.social and I argue we are missing the most prevalent one: specialization. And the same applies to alternative splicing! 1/7 tinyurl.com/45k7kbmp
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Manuel Irimia @mirimiam.bsky.social · 21/01/2025
The job call is officially open. If you're interested, please apply through this link ASAP! 😃 www.mdc-berlin.de/career/jobs/... Please RT! 🙏
mdc-berlin.de
Postdoctoral researcher (m/f/d)
The Max Delbrück Center for Molecular Medicine (MDC) in the Helmholtz Association is an international biomedical research center dedicated to understanding the molecular mechanisms of health and disea...
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Manuel Irimia @mirimiam.bsky.social · 30/12/2024
🐟 Our new paper "Phenotypic impact of individual conserved neuronal microexons and their master regulators in zebrafish" is out in @elife.bsky.social 🐟 A nearly 10-year tour-de-force by Laura Lopez-Blanch and many others in the lab @crg.eu & @upf.edu elifesciences.org/reviewed-pre... Thread 👇1/9
elifesciences.org
Phenotypic impact of individual conserved neuronal microexons and their master regulators in zebrafish
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Manuel Irimia @mirimiam.bsky.social · 23/12/2024
🚨🚨🚨 If you're a bioinformatician who loves: 🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing 🚀 Collaborating and travelling Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu-@crg.eu in Barcelona. Qs: www.transdevolab.com Please RT! 🙏
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Manuel Irimia @mirimiam.bsky.social · 10/12/2024
We’re recruiting a PhD student to use comparative omics to investigate why some viruses can efficiently infect both human and mosquito cells, but lead to different infection outcomes. Fully funded position by @evomg-bcn.bsky.social at our lab at UPF-CRG and the Diez lab. www.crg.eu/en/content/t...
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Jose A. Esteban @jaestebancbm.bsky.social · 11/12/2024
"La importancia de apoyar la investigación en España" 👏👏👏 elpais.com/opinion/2024...
elpais.com
Paso adelante en la genética del autismo
El descubrimiento del mecanismo que podría explicar un gran porcentaje de los trastornos del espectro autista es un recordatorio de la importancia de apoyar la investigación española
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elDiario.es @eldiario.es · 04/12/2024
‼ Investigadores españoles dan un paso más en descifrar el misterio del autismo
eldiario.es
Investigadores españoles dan un paso más en descifrar el misterio del autismo
El trabajo, publicado en 'Nature', explica por qué la pérdida de ocho aminoácidos de cientos de una proteína tiene un "efecto tan fuerte" en el neurodesarrollo y abre nuevas vías para desarrollar tera...
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Manuel Irimia @mirimiam.bsky.social · 05/12/2024
Who would have thought that an actual sequence of a #microexon (GCAAGGACATATGGGCGAAGGAGA from CPEB4) would be in the headline of an article in @elpais.com! Congrats to the Mendez, @xsalvatella1.bsky.social and @jjlucaslab.bsky.social labs for this amazing work! english.elpais.com/science-tech...
english.elpais.com
The 24 DNA letters linked to autism: GCAAGGACATATGGGCGAAGGAGA
A team of Spanish scientists has discovered the mechanism that could explain a high percentage of autism spectrum disorders
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